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Viral and Parasitic Gastroenteritis المهم كتبت عليه الي مو مهم مكتوب ___فمعناتو معنانا ____الي ماعلق عليه فاضي والي قرأه مكتوب والون االحمر مهم Viral Gastroenteritis Inflammation of the stomach and intestines caused by viruses, which is also known as the stomach flu This highly contagious illness spreads through close contact with people who are infected contaminated food or water It can easily spread in close quarters childcare facilities Schools nursing homes cruise ships Viruses are responsible for up to ¾ of all infective diarrhoeas Viral gastroenteritis is the second most common viral illness after upper respiratory tract infection In developing countries, viral gastroenteritis is a major killer of infants who are undernourished Rotaviruses are responsible for half a million deaths a year HEPATITIS Hepatitis is inflammation of the liver The disease can be caused by infections from parasites, bacteria, or viruses Liver damage can also result from alcohol, drugs, or poisonous mushrooms Hepatitis A, B, and C are clinically the most important forms of viral liver disease Persons at risk of hepatitis B infection include 1) individuals with multiple sex partners 2) men who have sex with men 3) sex contacts of infected persons 4) injection drug users 5) household contacts of chronically infected persons Death from chronic hepatitis B occurs in 15 to 25 percent of chronically infected persons reading Most hepatitis C infections result from illegal injection drug use Transfusion-associated cases occurred prior to blood donor screening now the incidence is less than 1 per 2 million transfused blood units Fifty percent of those with hepatitis C go on to have chronic liver disease liver failure (cirrhosis) liver cancer Hepatitis C is the number one reason for receiving a liver transplant in the United States important Classification of hepatitis viruses based on mode of transmission Classification of major viral agents causing hepatitis مو مره مهه Hepatitis A Virus: Structure and Classification Virus classification Group: Group IV ((+)ssRNA) Family: Picornaviridae Genus: Hepatovirus Species: Hepatitis A virus Separate genus because of differences with other enteroviruses Naked icosahedral capsid SS RNA (740 nucleotides) Single serotype worldwide Humans only reservoir Electron micrograph of hepatitis A virions جدا مهمه Hepatitis A Virus Transmission Fecal-oral Close personal contact e.g., household contact, sex contact, child day care centers Contaminated food, water e.g., infected food handlers Blood exposure rare Estimated prevalence of hepatitis A virus ال Hepatitis A: Pathogenesis Incubation 4 weeks (range 2-6 weeks) Oral cavity GI tract liver via blood Replicates in hepatocytes (little damage to cells) released via bile to intestines 7-10 days prior to clinical symptoms Liver damage and clinical syndrome result of immune response and not direct effect of virus Hepatitis A: Clinical Features An acute illness with discrete onset of symptoms e.g. fatigue, abdominal pain, loss of appetite, nausea, vomiting Jaundice elevated serum aminotransferase levels, dark urine, light stool Adults are usually more symptomatic Patients are infective while they are shedding the virus in the stool- usually before the onset of symptoms Most cases resolve spontaneously in 2-4 weeks Complete recovery 99% مو مهم Hepatitis A - Diagnosis Detection of IgM antibody IgG positive 1-3 weeks later; suggests prior infection or vaccination مو مهم Hepatitis A - Treatment Supportive: no specific role of antiviral therapy Lifelong immunity likely after infection or vaccination PREVENTING HEPATITIS A Hygiene e.g., hand washing Sanitation e.g., clean water sources Hepatitis A vaccine pre-exposure مو مرا مهم HEPATITIS A VACCINES Inactivated vaccine Highly immunogenic 97%-100% of children, adolescents, and adults have protective levels of antibody within 1 month of receiving first dose essentially 100% have protective levels after second dose Highly efficacious In published studies, 94%-100% of children protected against clinical hepatitis A after equivalent of one dose HEPATITIS A VACCINES 1st dose at time 0 2nd dose 6-12 months afterwards POST-VACCINATION TESTING Not recommended High response rate among vaccinees Commercially available assay not sensitive enough to detect lower (protective) levels of vaccine-induced antibody مو مرا مهمه DURATION OF PROTECTION AFTER VACCINATION Protection begins 4 weeks after vaccine Persistence of antibody At least 5-8 years among adults and children Efficacy No cases in vaccinated children at 5-6 years Mathematical models of antibody decline suggest protective antibody levels persist for at least 20 years Other mechanisms, such as cellular memory, may contribute Hepatitis A Vaccine Pre-exposure Vaccination Persons at increased risk for infection travelers to intermediate and high HAV-endemic countries MSM (Men who have sex with men) Drug users Persons who have clotting factor disorders persons with chronic liver disease Communities with historically high rates of hepatitis A -routine childhood vaccination no Hepatitis A Vaccine Immunogenicity, Side Effects Immunogenicity in children, adolescents, adults 94-100% positive 1 month after dose 1 99-100% positive after dose 2 Most common side effects Sore injection site (50%), headache (15%), malaise (7%) No severe reactions known Safety in pregnancy unknown (risk likely is low) Currently licensed for aged 1 year and older Hepatitis B جدا مهم Hepatitis B: Structure Member of the hepadnavirus group Virion(any particle of vurise) also referred to as Dane particle 42nm enveloped virus Core antigens located in the center (nucleocapsid) Structure and Replication مو مهم بس االمحر Circular partially double stranded DNA of virus Initial replication to complete circular DNA with subsequent transcription to make several mRNAs some of which are translated into viral proteins One of the mRNAs is replicated with a reverse transcriptase making the DNA that will eventually be the core of the progeny virion Some DNA integrates into host genome causing carrier state Virus stable and resist many stresses making them more infectious Hepatitis B Virus TEM micrograph showing hepatitis B viruses The structure of hepatitis B virus Prevalence of chronic infection with hepatitis B virus, 2006 مو مهمf بس نسبة السعوديه Global Patterns of Chronic HBV Infection High (>8%): 45% of global population lifetime risk of infection >60% early childhood infections common Intermediate (2%-7%): 43% of global population lifetime risk of infection 20%-60% infections occur in all age groups Low (<2%): 12% of global population lifetime risk of infection <20% most infections occur in adult risk groups مهمه Possible Outcomes of HBV Infection Acute hepatitis B infection 95% of infant3-5% of adult-acquired acquired infections infections Chronic HBV infection Chronic hepatitis 12-25% in 5 years 6-15% in 5 years Cirrhosis Hepatocellular carcinoma Death 20-23% in 5 years Liver failure Liver transplant Death Outcome of Hepatitis B Virus Infection by Age at Infection Chronic Infection (%) 100 100 80 80 60 60 Chronic Infection 40 40 20 20 Symptomatic Infection 0 0 مهمه HBV Modes of Transmission Sexual Parenteral Perinatal مهم Concentration of HBV in Various Body Fluids High blood serum wound exudates Moderate semen vaginal fluid saliva Low/Not Detectable urine feces sweat tears breast milk Hepatitis B Symptoms About 50%-60% of adults with HBV infection have no signs or symptoms Those who do have symptoms might experience: Jaundice Fatigue Abdominal pain Loss of appetite Nausea, vomiting Joint pain HBV Pathogenesis مو مهم بس االمحر Virus enters hepatocytes via blood Immune response (cytotoxic T cell) to viral antigens expressed on hepatocyte cell surface responsible for clinical syndrome 5 % become chronic carriers (HBsAg> 6 months) Higher rate of hepatocellular in chronic carriers, especially those who are “e” antigen positive Hepatitis B surface antibody likely confers lifelong immunity Hepatitis B Ab indicates low transmissibility Elimination of HBV Transmission Prevent perinatal HBV transmission Routine vaccination of all infants Vaccination of children in high-risk groups Vaccination of adolescents all children up through age 18 Vaccination of adults in high-risk groups Hepatitis B Vaccine مهم • Licensed in 1982 • 3 dose series, typical schedule 0, 1-2, 4-6 months • 2 dose series (adult dose) • Protection ~30-50% dose 1; 75% - 2; 96% - 3 • lower in older, immunosuppressive illnesses • e.g., HIV, chronic liver diseases, diabetes, obese, smokers مو مهم Hepatitis B Vaccine Safety Side effects rare Anaphylaxis estimated to occur in 1/600,000 doses given No scientific data to link hepatitis B vaccine with multiple sclerosis (MS), other autoimmune diseases, autism مو مرا مهم Hepatitis B Vaccination Routine infant Ages 11-15 and through age 18 Over 18 – high risk Occupational risk Hemodyalisis patients All STD clinic clients Multiple sex partners or prior STD Inmates in Correctional settings MSM IDU Institution for developmental disability Hepatitis C Virus Hepatitis C Structure and Classification Member of the flavivirus family Enveloped single stranded RNA virus Humans and chimpanzees only known reservoirs 6 serotypes (genotypes) and multiple subtypes based on high variability of envelope glycoproteins مهم Occupational Transmission of HCV Inefficient by occupational exposures Average incidence 1.8% following needle stick from HCV-positive source Case reports of transmission from blood splash to eye Prevalence 1-2% among health care workers Perinatal Transmission of HCV Transmission only from women HCV-RNA positive at delivery Average rate of infection 6% Higher (17%) if woman co-infected with HIV No association with Delivery method Breastfeeding Infected infants do well Severe hepatitis is rare Sexual Transmission of HCV Occurs, but efficiency is low ◦ Rare between long-term steady partners ◦ Factors that facilitate transmission between partners unknown Accounts for 15-20% of acute and chronic infections in the United States Partner studies Household Transmission of HCV Rare but not absent Could occur through percutaneous/mucosal exposures to blood Contaminated equipment used for home therapies Through sharing of contaminated personal material (razors, toothbrushes) Other Potential Exposures to Blood No or insufficient data showing increased risk intranasal cocaine use, tattooing, body piercing, acupuncture, military service Hepatitis C: Clinical Features Acute infection asymptomatic in over 80% of patients, when present, acute illness usually mild Acute symptoms include jaundice, nausea, abdominal pain, loss of appetite, dark urine مهمه Chronic Hepatitis C Factors Promoting Progression or Severity Increased alcohol intake Age > 40 years at time of infection HIV co-infection Other Male gender Chronic HBV co-infection Hepatitis C: Diagnosis ELISA usually positive within 2-5 months after infection PCR positive 1-2 weeks post infection Hepatitis D Defective virus that requires co-infection with hepatitis B for replication Enveloped with SS RNA genome Only antigen encoded in the delta antigen Hepatitis D Virus Modes of Transmission • Percutaneous exposures • injecting drug use • Permucosal exposures • sex contact Geographic Distribution of HDV Infection Taiwan Pacific Islands HDV Prevalence High Intermediate Low Very Low No Data Hepatitis D Pathogenesis ال Pathogenesis Immune mediated Co-infection infection with B at the same time (more severe) Superinfection acquisition of Hep D in chronically Hep B Hepatitis D - Clinical Features Coinfection severe acute diseaselow risk of chronic infection Superinfection usually develop chronic HDV infection high risk of severe chronic liver disease Hepatitis E Virus مو مرا مهم TEM micrograph of hepatitis E virions. Hepatitis E Non-enveloped single stranded RNA virus Resembles calicivirus or Norwalk agent Similar illness to Hep A except high mortality in pregnant women Hepatitis E - Epidemiologic Features Most outbreaks associated with fecally contaminated drinking water Minimal person-to-person transmission U.S. cases usually have history of travel to HEV- endemic areas Hepatitis E - Clinical Features • Incubation period • Case-fatality rate Average 40 days Range 15-60 days Overall, 1%-3% Pregnant women, 15%-25% • Illness severity Increased with age • Chronic sequelae None identified Prevention and Control Measures for Travelers to HEV-Endemic Regions • Avoid drinking water (and beverages with ice) of unknown purity, uncooked shellfish, and uncooked fruit/vegetables not peeled or prepared by traveler Rotavirus Rotaviruses, found in many mammalian species Rotaviruses have a characteristic morphology that distinguishes them from other reoviruses A. Epidemiology Rotaviruses are divided into seven serogroups (A through G) Group A is the most important cause of outbreaks diseases in humans Transmission of rotaviruses is via the fecal–oral route Seasonal incidence is associated with rotavirus infections January through March Infectious particles are relatively stable can survive for extended periods on various surfaces Account for about 50% of severe diarrhea in infants and young children (up to age 2 years) B. Clinical significance ال Following ingestion, rotaviruses infect the epithelial cells of the small intestine primarily the jejunum Rotaviruses are able to reach the small intestine because they are resistant to the acid pH of the stomach The incubation period is usually 48 hours or less Infection can be subclinical or may result in symptoms ranging from mild diarrhea and vomiting to severe, nonbloody, watery diarrhea with dehydration and loss of electrolytes Although rotavirus infections are probably equally widespread around the world the outcomes of infection vary significantly in different regions malnutrition dramatically increases the severity of the infection Infection results in some degree of lifelong immunity with reinfected adults suffering a much milder illness Infants who are breastfed also suffer milder disease manifestations In developing countries and areas where medical facilities or personnel may be lacking, the mortality is significant An estimated 1 million deaths per year worldwide result from rotavirus infection C. Laboratory identification Severe diarrhea, dehydration, and electrolyte loss can be due to a variety of causes definitive diagnosis cannot be made on clinical grounds alone Identification can be made by detection of viral capsid antigens in stool samples using ELISA An increase in the titer of antiviral antibody in a patient’s serum can also be diagnostic E. Treatment and prevention There is no specific antiviral drug appropriate for treatment of rotavirus infections The most important clinical intervention is the rapid and efficient replacement of fluids and electrolytes, usually intravenously Prevention of rotavirus infections requires improved sanitation measures ADENOVIRIDAE مهم Adenoviruses are Nonenveloped Icosahedral Double-stranded linear DNA They commonly cause diseases such as Respiratory tract infections Gastroenteritis Conjunctivitis Commonly infecting humans, other mammals, and birds Over fifty serotypes of human adenoviruses are known most individuals have been infected by several different types by adulthood Have not been associated with human malignancies ال A. Epidemiology and pathogenesis The site of the clinical syndrome is generally related to the mode of transmission most adenoviruses are primarily agents of respiratory disease Most adenoviruses also replicate efficiently and symptomatically in the intestine can be isolated from stool well after respiratory disease symptoms have ended from the stools of healthy persons Ocular infections are transmitted by direct inoculation of the eye by virus-contaminated hands ophthalmologic instruments children swim together ال B. Structure and replication The adenovirus capsid is composed of hexon capsomers Replication of adenoviruses essentially follows the general model for DNA viruses Attachment to a host cell receptor occurs via knobs on the tips of the viral fibers The viral genome is then progressively uncoated while it is transported to the nucleus The structure of adenovirus 1 = penton capsomeres 2 = hexon capsomeres 3 = viral genome (linear dsDNA) C. Clinical significance Adenoviruses all replicate well in epithelial cells The observed disease symptoms are related primarily to the killing of these cells, and systemic infections are rare Most adenovirus infections are asymptomatic, but certain types are more commonly associated with disease than others These diseases can be conveniently grouped into those affecting the 1) respiratory tract 2) eye 3) gastrointestinal (GI) tract 4) other tissues, including the urinary tract and heart Gastrointestinal diseases مهم Most human adenoviruses multiply in the GI tract and can be found in stools generally asymptomatic infections Two serotypes have been associated specifically with infantile gastroenteritis Adenovirus infections have been estimated to account for 5 to 15 % of all viral diarrheal disease in children D. Laboratory identification Isolation of virus for identification desirable in cases of epidemic disease nosocomial outbreak, especially in the nursery The virus is more commonly detected by direct test of stool specimens by ELISA ال E. Treatment and prevention No antiviral agents are currently available Prevention of epidemic respiratory disease by immunization has been used only for protection of the military population This vaccine contains live, unattenuated adenovirus قراءة Caliciviruses (formerly known as Norwalk-like virus) Norovirus replicates in the GI tract and is shed in the stool Infection is by fecal–oral route following ingestion of contaminated food or water person-to-person contact contact with contaminated surfaces Major cause of epidemic acute gastroenteritis It affects primarily adults and school-age children but not infants The clinical presentation is characterized by nausea, vomiting, and diarrhea Symptoms last 24 to 48 hours, and the disease is self- limited Radioimmunoassays and ELISA tests are available for the detection of antiviral antibodies No specific antiviral treatment is available Careful attention to hand washing and measures to prevent contamination of food and water supplies should reduce the incidence of these infections Gastrointestinal System Infection Protozoa and Parasitic worm (Helminth) Leishmania donovani Visceral leishmaniasis (kala-azar) In the visceral disease, the parasite initially infects macrophages, which, in turn, migrate to the spleen, liver, and bone marrow, where the parasite rapidly multiplies Symptoms include intermittent fevers weight loss spleen and liver enlarge jaundice may develop Mortality is nearly 100% within 2 years if the disease is untreated In some cases, complications resulting from secondary infection and emaciation result in death Leishmania donovani in bone marrow cell Echinococcus granulosus (dog tapeworm) Infection produces large, hydatid cysts in liver, lung, and brain Anaphylactic reaction to worm antigens can occur if the cyst ruptures The disease follows ingestion of eggs in dog feces Sheep often serve as an intermediate host Echinococcosis is diagnosed by CT scan or biopsy of infected tissue and is treated with albendazole and surgical excision of intact cysts E. granulosus scolex E. granulosus life cycle Schistosoma mansonin مهمه The primary site of infection is the gastrointestinal tract Damage to the intestinal wall is caused by the host’s inflammatory response to eggs deposited at that site The eggs also secrete proteolytic enzymes that further damage the tissue Clinical presentation includes GI bleeding, diarrhea, and liver damage Periportal fibrosis leads to portal hypertension and massive splenomegaly The disease is transmitted by direct skin penetration This form of schistosomiasis is diagnosed by identification of characteristic eggs in the stool Schistosomes encopula A Schistosoma mansoni egg with the characteristic lateral spine Entamoeba histolytica (Amebic dysentery) A world wide in distribution More often in tropical countries with poor sanitary conditions A commensal protozoa when human has a normal immune function Invading host tissues and causing amoebiasis when human has a lower immune function Morphology ال Trophozoite No regular in shape, 20~60μm in size An active-moving trophozoite produce pseudopods (organelle) A spherical central nucleus Peripheral chromatin Erythrophagocytosis Cyst Spherical in shape & 10~20μm in diameter. 1~4 nuclei (similar to that of the trophozoite) Immature cyst (1 or 2 nuclei) has the glycogen vacuole & chromatoid body No inclusions, disappear in mature cyst (4 nuclei) Infective stage Entamoeba histolytica cyst Life-cycle of Entamoeba histolytica Life cycle Hd,h Basic model: cyst → trophozoite → cyst Parasitic location: large intestine (common); intestinal tissue or other tissues (occasional) Infective stage: mature cyst Trophozoite in diarrhea or pus; Cyst in formed feces Infection: by ingestion of mature cyst ايوا Clinical classification 90% persons infected are carriers Intestinal amoebiasis Acute intestinal amoebiasis amoebic dysentery (bloody, mucus-containing diarrhea) + lower abdominal discomfort + tenesmus Chronic intestinal amoebiasis dyspepsia + weight loss + asthenia (common) / diarrhea مهمه Extraintestinal amoebiasis Liver : amoebic hepatitis + amoebic liver abscess --- pain in right-upper-quadrant + fever + marked tenderness of liver Lung: amoebic pulmonary abscess --- pain in chest + cough + fever Sometimes, it can be carried to other organs Brain, skin Laboratory diagnosis Fecal examination Wet mounts Trophozoites in diarrhea feces Wet mounts stained with iodine Cyst in formed feces Pus examination Trophozoites in aspirate pus from abscesses Giardia lamblia (Giardiasis) Giardiasis is the most commonly diagnosed parasitic intestinal disease in the United States Ingested cysts form trophozoites in the duodenum, where they attach to the wall but do not invade Giardia infections are often clinically mild, although in some individuals, massive infection may damage the duodenal mucosa Because the Giardia parasite preferentially inhabits the duodenum, fecal examination may be negative A commercial enzyme-linked immunosorbent assay to measure Giardia antigen in fecal material has proven useful Metronidazole is an effective treatment G. lamblia cysts are resistant to chlorine concentrations used in most water treatment facilities So can effect in swemming pool Giardia cell, SEM Life cycle of Giardia lamblia Ascaris lumbricoides Ascariasis (roundworm disease) It is second only to pinworms as the most prevalent multicellular parasite in the United States Approximately one third of the world’s population is infected with this worm The disease is transmitted by ingestion of soil containing the organism’s eggs Humans are the sole host Larvae grow in the intestine, causing abdominal symptoms, including intestinal obstruction Roundworms may pass to the blood and through the lungs Roundworm disease is diagnosed by detection of characteristic eggs in the stool It is treated with pyrantel pamoate or mebendazole An adult female Ascaris worm. Fertile egg in human faeces (detail) Ancylostoma duodenale (Hookworm disease) The worm attaches to the intestinal mucosa causing anorexia ulcer-like symptoms chronic intestinal blood loss, leading to anemia The disease is transmitted through direct skin penetration by larvae found in soil Hookworm disease is diagnosed by identification of characteristic eggs in the stool It is treated with pyrantel pamoate or mebendazole Strongyloides stercoralis قراءة Strongyloidiasis (threadworm disease) It is relatively uncommon compared with infections by other intestinal nematodes It is a relatively benign disease in healthy individuals but can progress to a fatal outcome in immunocompromised patients because of dissemination to the CNS or other deep organs in certain immunocompromised Patients The disease is transmitted through direct skin penetration by larvae found in soil Threadworm disease is diagnosed by identifying larvae in the stool It is treated with thiabendazole, albendazole or ivermectin First stage larva (L1) of S. stercoralis Trichuris trichiura قراءة Trichuriasis (whipworm disease) The infection is usually asymptomatic; however, abdominal pain, diarrhea, flatulence, and rectal prolapse can occur The disease is transmitted by ingestion of soil containing the organism’s eggs Whipworm disease is diagnosed by identifying characteristic eggs in the stool It is treated with mebendazole Egg of Trichuris vulpis Taenia saginata (Taeniasis) مهمه This form of the disease is caused by the larval form of Taenia saginata (beef tapeworm) The organism primarily infects the intestines and does not produce cysticerci Most infected individuals are asymptomatic The disease is transmitted by larvae in undercooked or raw beef Taeniasis is diagnosed by detection of proglottids in the stool Taenia saginata proglottid stained to show uterine branches. The pore on the side identifies T. saginata as a cyclophyllid cestode.