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Cladistics
Phylogeny
Macroevolution & Phylogeny
Phylogenetic tree – hypothesized genealogy traced
back to the last common ancestor (i.e., the most recent)
through hierarchical, dichotomous branching
Cladistics – the principles that guide the production of
phylogenetic trees, a.k.a., cladograms
Macroevolution & Phylogeny
Phylogenetic tree, phylogeny, or cladogram
Node – branch point,
speciation event
Macroevolution & Phylogeny
Phylogenetic tree, phylogeny, or cladogram
Lineage or clade
– an entire
branch
Macroevolution & Phylogeny
Phylogenetic tree, phylogeny, or cladogram
A clade is a monophyletic group, i.e., an
ancestral species and all of its descendents
Macroevolution & Phylogeny
Phylogenetic tree, phylogeny, or cladogram
A paraphyletic group consists of an ancestor
and some of its descendents
Macroevolution & Phylogeny
How are phylogenetic trees constructed?
Macroevolution & Phylogeny
The fossil record is especially valuable, and the only
option for many extinct taxa
Macroevolution & Phylogeny
However, we almost never have a continuous record
from one species to the next
Macroevolution & Phylogeny
Cladistic principles allow us to construct
hypothesized phylogenetic trees
Cladistic Analysis
Fossils provide morphological data for extinct
species, whereas comparisons of multiple types of
traits – including molecular – do so for extant species
Cladistic Analysis
Similar characters (e.g., morphological, behavioral,
molecular, etc. traits or features) suggest
relatedness…
Wasps
[Hymenoptera]
Cladistic Analysis
But, not all similarity derives from common ancestry!
Mantisfly
[Neuroptera]
Convergent evolution can produce superficially
similar traits that lack homology with one another
Cladistic Analysis
Homologous characters share common ancestry
Lack of similarity among taxa results from
divergence
Cladistic Analysis
Analogous characters do not share common ancestry
Similarity among taxa results from convergence
Cladistic Analysis
As a general rule, the more homologous
characters shared by two species, the
more closely they are related
Sequences of DNA & RNA (nucleotides) and proteins
(amino acids) are used as characters; as a general
rule, the more recently two species shared a
common ancestor, the more similar their sequences
Cladistic Analysis
Each nucleotide can be treated as a character
Character changes (mutations) from the ancestral
to the derived state include:
Substitutions
…AGCTCTAGG…
…AGCTATAGG…
Insertions
…AGCTCTAGG…
…AGCTGATCTAGG…
Deletions
…AGCTCTAGG…
…AGCTCTAGG…
Mutations
Cladistic Analysis
All
similar
characters
Analogies
Shared
Primitive
Characters
(ancestral)
Homologies
Shared
Derived
Characters
(unique
to a clade)
The sequence of branching in a cladogram then
represents the sequence in which evolutionary
novelties (shared derived characters) evolved
Cladistic Analysis
Ingroup vs. Outgroup
Ingroup = the group whose relationships we are
trying to resolve
Fig. 25.11
Cladistic Analysis
Ingroup vs. Outgroup
Outgroup = a species (or group) known to have an
older most recent common ancestor with the ingroup
than the ingroup’s most recent common ancestor
Fig. 25.11
Cladistic Analysis
Ingroup vs. Outgroup
An outgroup helps identify shared ancestral and
shared derived characters (unique to a clade)
Fig. 25.11
Cladistic Analysis
Parsimony & Occam’s Razor
The most parsimonious tree is the one that requires
the fewest evolutionary events (appearance of
shared derived characters)
Fig. 25.11
Cladistic Analysis
Parsimony & Occam’s Razor
On this most parsimonious cladogram, each key
character originated (evolved) once
Fig. 25.11
Cladistic Analysis
An example…
Outgroup
Ingroup
See Fig. 25.15 for another example
Cladistic Analysis
An example…
Outgroup
Ingroup
Create potential topologies for
the tree
See Fig. 25.15 for another example
Cladistic Analysis
An example…
Outgroup
Ingroup
Create potential topologies for
the tree
Map the characters onto the trees
Choose the most parsimonious tree
See Fig. 25.15 for another example