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G-protein linked • Plasma membrane receptor. • Works with “G-protein”, an intracellular protein with GDP or GTP. • Involved in yeast mating factors, epinephrine (adrenaline), many neurotransmitters, blood vessel development. G-protein • GDP and GTP acts as a switch. • If GDP - inactive • If GTP - active G-protein • When active (GTP), the protein binds to another protein (enzyme) and alters its activation. • Active state is only temporary. G-protein linked receptors • Very widespread and diverse in functions. • Ex - vision, smell, G-protein linked receptors • Many diseases work by affecting g-protein linked receptors. • Ex - whooping cough, botulism, cholera, some cancers G-protein linked receptors • Up to 60% of all medicines exert their effects through G-protein linked receptors. Signal-Transduction Pathways • The further amplification and movement of a signal in the cytoplasm. • Often has multiple steps using relay proteins such as Protein Kinases. Protein Kinase • General name for any enzyme that transfers Pi from ATP to a protein. • About 1% of our genes are for Protein Kinases. Protein Phosphorylation • The addition of Pi to a protein, which activates the protein. • Usually adds Pi to Serine or Threonine. Amplification • Protein Kinases often work in a cascade with each being able to activate several molecules. • Result - from one signal, many molecules can be activated. Proteins • The molecular tools of the cell. • Made of C,H,O,N, and sometimes S. Functions of Proteins • • • • • • • Structure Enzymes Antibodies Transport Movement Receptors Hormones Proteins • Polypeptide chains of Amino Acids linked by “peptide bonds”. Amino Acids • • • • • All have a Carbon with four attachments: -COOH (acid) -NH2 (amine) -H -R (some other side group) Amino Acids R groups • 20 different kinds: • Nonpolar - 9 AA • Polar - 6 AA • Electrically Charged • Acidic - 2 AA • Basic - 3 AA Amino Acids Levels Of Protein Structure • Organizing the polypeptide into its 3-D functional shape. • • • • Primary Secondary Tertiary Quaternary Primary • Sequence of amino acids in the polypeptide chain. • Many different sequences are possible with 20 AAs. Secondary • 3-D structure formed by hydrogen bonding between parts of the peptide backbone. • Two main secondary structures: a helix β pleated sheets Tertiary • Bonding between the R groups. • Examples: • • • • hydrophobic interactions ionic bonding Disulfide bridges (covalent bond) Can also include H bonds Quaternary • When two or more polypeptides unite to form a functional protein. • Example: hemoglobin Is Protein Structure Important? Denaturing Of A Protein • Events that cause a protein to lose structure (and function). • Example: • pH shifts • high salt concentrations • heat Enzymes • Biological catalysts made of protein. • Cause the rate of a chemical reaction to increase. Chemical Reaction AB + CD AC + BD AB and CD are “reactants” AC and BD are “products” Enzymes • Lower the activation energy for a chemical reaction to take place. Enzyme Terms • Substrate - the material and enzyme works on. • Enzyme names: Ex. Sucrase - ase name of an enzyme 1st part tells what the substrate is. (Sucrose) Enzyme Name • Some older known enzymes don't fit this naming pattern. • Examples: pepsin, trypsin Active Site • The area of an enzyme that binds to the substrate. • Structure is designed to fit the molecular shape of the substrate. • Therefore, each enzyme is substrate specific. Environment • Factors that change protein structure will affect an enzyme. • Examples: • pH shifts • temperature • salt concentrations Enzyme Inhibitors • Competitive - mimic the substrate and bind to the active site. • Noncompetitive - bind to some other part of the enzyme. Allosteric Regulation • The control of an enzyme complex by the binding of a regulatory molecule. • Regulatory molecule may stimulate or inhibit the enzyme complex. Allosteric Regulation Control of Metabolism • Is necessary if life is to function. • Controlled by switching enzyme activity "off" or "on” or separating the enzymes in time or space.