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Aldehyde Dehydrogenase Zach Lawton 1 Background • Superfamily of Nictonamide adenine dinucleotide phosphate (NADP) enzymes • Location: all three domains of life Three subclasses of enzymes in eukaryotes Cytosol, mitochondria, endoplasmic reticulum and cornea • Function: catalyze aldehyde to carboxylic acid • Importance: Metabolism Removal of toxic aldehydes UV damage to the cornea Hangovers 2 Amino Acid Sequence Alignment Lys 192 Cys 302 Glu 268 3 Structure—ALDH2 • Expressed as tetramer or octamer in most cases. • Mitochondria ALDH2 shown. • Percentage of alpha helix and beta sheets vary between each protein and class of ALDH. • ALDH1 ALDH2 ~40% α-helix, ~35% β-sheet • ALDH3 ~35% α-helix, ~5% β-sheet Alpha Helix – Yellow Beta Sheet – Blue PDB = 1O05 4 Active Site—ALDH1 and ALDH2 • NAD(P)+ binds into the pocket where it is stabilized by Lys192. • Interactions with Cys302 and Glu268. • Mg2+ is used as a catalysis. Miller, S.J., Hurley, T.D. (2003) Coenzyme Isomerization is Intergral to Catalysis in Aldehyde. ACS Biochemistry. 42, 7100-7109. 5 Reaction Mechanism 6 Conclusion • ALDH is a NAD/P+ Enzyme superfamily. • Primary function: Converts aldehyde to carboxylic acid using Cystine and Glutamate residues. • Three Subclasses ALDH1 Cytosol ALDH2 Mitochondria, Endoplasmic reticulum ALDH3 Cornea and Liver QUESTIONS? 7