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Int J Hematol (2008) 87:303–309 DOI 10.1007/s12185-008-0036-0 ORIGINAL ARTICLE Molecular genotyping and frequencies of A1, A2, B, O1 and O2 alleles of the ABO blood group system in a Kuwaiti population Mokhtar M. El-Zawahri Æ Yunus A. Luqmani Received: 4 April 2007 / Revised: 26 November 2007 / Accepted: 14 December 2007 / Published online: 5 February 2008 Ó The Japanese Society of Hematology 2008 Abstract Expression of the highly polymorphic ABO gene cluster is commonly investigated for blood transfusion and analysis, but little information is available for Middle Eastern populations. This study determined the major ABO allele frequency in a Kuwaiti Arab cohort using a multiplex PCR– RFLP technique; 355 unrelated blood donors of phenotype A1 (46), A2 (31), A1B (6), A2B (4), B (97) and O (171) were genotyped. DNA fragments of 252 (251 for O1) and 843 (842 for A2) bp spanning the two major exons, 6 and 7, of the ABO gene were amplified and digested with HpaII and KpnI. Thirteen different genotypes could be identified when combining the A1, A2, B, O1 and O2 alleles from the digestion patterns: 1 A1A1 (0.28%), 6 A1A2 (1.69%), 38 A1O1 (10.71%), 1 A1O2 (0.28%), 1 A2A2 (0.28%), 30 A2O1 (8.45%), 6 A1B (1.69%), 4 A2B (1.13%), 12 BB (3.38%), 79 BO1 (22.25%), 6 BO2 (1.69%), 167 O1O1 (47.04%) and 4 O1O2 (1.13%). Two of the combinations (A2O2, O2O2) were not found. All genotypes determined were consistent with the serotypes. The frequencies of the five alleles in the Kuwaiti sample population were ABO*A1 = 0.0746, ABO*A2 = 0.0592, ABO*B = 0.1676, ABO*O1 = 0.6831 and ABO*O2 = 0.0155. These results are discussed with reference to gene frequencies reported for other ethnic groups. Keywords Molecular genotyping Allele frequencies Suballeles ABO PCR–RFLP Kuwaiti population M. M. El-Zawahri Department of Biological Sciences, Faculty of Science, Kuwait University, Safat, Kuwait Y. A. Luqmani (&) Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kuwait University, P.O. Box 24923, 13110 Safat, Kuwait e-mail: [email protected] 1 Introduction Human population genetic studies were initiated following the discovery of the ABO blood groups by Landsteiner in 1900 [1]. His findings of red cell agglutination by serum and recognition of blood groups laid the scientific basis for safe practice of blood transfusion. Red cell serology then underwent a renaissance and the first examples of widespread human polymorphisms were defined. Recently, a different form of classification of human blood groups has been possible. More than 250 human blood group antigens have been classified into 29 blood group systems by the International Society of Blood Transfusion (ISBT) Working Party on Terminology for Red Cell Surface Antigens [2]. The key features of systems and their antigens were described by Reid and Lomas-Francis in 1997 [3]. Although dozens of blood systems have been identified, the ABO blood group system has proven to be one of the most widely analyzed polymorphisms, versatile and long lasting in transfusion and transplantation medicine, forensic serology, paternity testing, anthropologic investigation, and personality prediction because of the inherent stability of the antigens involved and the ability to readily obtain results from dried blood stains [4, 5]. The ABO system involves four antigens: A, B, AB and A1 [6]. The sequence of oligosaccharides determines whether the antigen is A, B, or A1. For A/B antigen synthesis to occur a precursor called H antigen must be present. H antigen is the only antigen of Hh blood group system [6]. In RBCs, the enzyme that synthesizes the H antigen is encoded by the H locus on chromosome 19 at q13.3 [7]. The H antigen is converted to A or B by a1 ? 3N-acetyl-galactosaminyl-transferase (A transferase) or a1 ? 3-galactosyl-transferase (B transferase), respectively. Both the transferases use the same acceptor 123 304 substrate (H antigen) but different nucleotide-sugar donor substrates. On the other hand, group O individuals lack such transferase enzymes and, consequently, continue to express the basic H structure constituting a solitary terminal fucose moiety. The major A, B and O alloantigens are coded by the A, B and O major alleles, respectively, at the ABO locus on the human chromosome 9 at 9q34.1–q34.2. Until recently, methods for determining ABO types have been restricted to the serological test designed to detect antibody or antigen materials and have been widely adopted for several decades [8]. In addition to some technical drawbacks, the scope of these various serological assays for polymorphism detection is relatively limited [9] and even improvements [10] in these traditional methods can only detect ABO phenotypes. In 1990, Yamamoto and his colleagues elucidated the molecular genetic basis of the major alleles at the ABO locus [11–13]. Since then there has been substantial progress in our understanding of ABO genes and the functional significance of the common allelic polymorphism at this locus. The ABO locus spans over 18 kb and consists of seven exons that result in a protein of 354 amino acids [6]. The exons range in size from 26 to 688 bp. Most of the coding sequence is included in exon 7 [12–14]. Many mutations affecting the variety and specificity of the encoded transferases have been identified. The nucleotide sequences of the A and B genes are highly homologous (99%); the A and B transferase genes differ in seven base substitutions (at nucleotide positions 297, 526, 657, 703, 796, 803 and 930), but only four of these (at 526, 703, 796 and 803) result in an amino acid change, while the substitutions 297, 657 and 930 are silent. The O and A transferase genes are identical except for a single cytosine deletion at position 261 [12, 13]. The loss of this single nucleotide results in a frame shift, producing a premature stop codon, leading to a truncated, enzymatically inactive protein of 115 amino acids [15]. A second O allele (O2) that lacks this deletion has been described [16, 17], which has some of the B allele mutations and an additional mutation (G802Agly ? arg), that presumably inactivates the enzyme. The A2 allele has been characterized [18] by a single base deletion in the coding sequence which results in an additional domain at the C terminus. Molecular cloning of the ABO gene and elucidation of the molecular basis of its various alleles allow the direct determination of the ABO genotypes without the need for family study. Not only has ABO genotyping become possible, but it has also become feasible to genetically engineer the activity and specificity of the enzymes. Variety of assays for polymorphism detection at the DNA level has essentially replaced the former serological assays even for routine ABO typing for blood transfusion. Various methods have been used in the light of the increasing 123 M. M. El-Zawahri, Y. A. Luqmani allelic variations. Several PCR based techniques such as RFLP which provided the first basis for studying genetic polymorphism at the DNA level [19], allele-specific PCR (AS-PCR) [20], denaturing gradient gel electrophoresis [21], single-strand conformation polymorphism (SSCP) [22], amplified product length polymorphism (APLP) [23], and others, take advantage of altered restriction enzyme recognition sites caused by substitutions to genotype the ABO locus for the A, B and O alleles and sub-alleles. Single nucleotide polymorphisms (SNPs), mainly within exons 6 and 7, define seven classical alleles: A1, A2, B, O1, O2 and O3 (A101, A102, A201, B101, O101, O201 and O303, respectively) [24]. More than 100 ABO alleles have been characterized to date and are defined by different SNPs within both coding and non-coding sequences [24– 29]. The incidence of the various molecular genotypes of the ABO major-alleles and sub-alleles in the world population has been studied in restricted ethnic groups. Polymorphisms due to ethnic and/or phenotypic variations have been reported, underlining the necessity to look at more populations to determine the extent of human variation. Kuwait is a small Arab country located northwest of the Arabian Gulf on the northeastern part of the Arabian Peninsula and shares borders with Saudi Arabia and Iraq. It is an oil-producing country that is highly urbanized. The surface area spans 17,818 km2 with a population of 2.895 million (2006 census). The population comprises of approximately 34.54% Kuwaitis and 65.46% expatriate workers of various nationalities, the majority of whom are Arabs and Asians. The Kuwaiti population is a relatively young population that has roots originating from its neighboring countries. In this paper we report the results of our study looking at allele frequencies for five of the known ABO polymorphisms in the Kuwaiti population (A1, A2, B, O1 and O2). 2 Materials and methods 2.1 Blood samples Peripheral venous blood samples were collected into standard hematological EDTA vials from 355 random unrelated healthy Kuwaiti donors at the Kuwait Central Blood Bank (consent was given). The expatriate workers were excluded to obtain a pure Kuwaiti population. 2.2 Blood group serology ABO phenotypes of the samples were determined by the conventional erythrocyte and serum blood grouping procedures. Genotyping of ABO alleles in Kuwait 305 2.3 DNA preparation 3.2 Blood group genotyping DNA was extracted from EDTA blood using Puregene DNA Isolation Kit (Gentra, Minneapolis, USA) or Generation Capture Column Kit. Purified DNA samples were quantified by spectrometry and diluted to approximately 100 ng/ll. DNA preparations from 355 blood donors were amplified in the multiplex PCR system. The fragments amplified cover the two major exons and constitute 91% of the translated gene. PCR using primer pair mo-57/mo-46 gives a fragment of 252 bp (251 in O1) (exon 6) that is digested by KpnI into 87 and 164 bp. PCR using primer pair mo101/ mo-71 gives a fragment of 843 bp (842 in A2) (exon 7) that is degraded by HpaII. The 843 (842)-bp fragment also includes 125 bp of untranslated DNA at the 30 end of the gene (61 bp in A2 alleles) due to the single base deletion resulting in an abolished stop codon and consequently a larger reading frame [18]. After simultaneous digestion with HpaII and KpnI, a conclusive interpretation of the expected fragmentation pattern obtained could be made in the 355 cases. Theoretically, 15 possible different genotypes could be identified from the possible combinations of the five alleles from the digestion patterns (Table 1). Examples of the electrophoretic patterns of the PCR products after digestion of Kuwaiti DNA samples are shown in Fig. 1. Thirteen different combinations of the five alleles A1, A2, B, O1 and O2 were found in the Kuwaiti population. Two of the combinations (A2O2 and O2O2) were not found. The distribution of phenotypes, genotypes and allele frequencies are show in Table 2. All genotyping results were in agreement with the serologically determined phenotypes. The observed genotypic numbers did not differ significantly from those expected under the assumption of Hardy–Weinberg equilibrium (v2 = 10.015, 2.4 ABO genotyping Using essentially the technique developed by Olsson and Chester [28], a multiplex PCR with four primers amplifying exons 6 and 7 of the ABO genes was performed. (Gene amplifier PCR system 9600, Perkin Elmer, was used.) Fragments of 252 (251 for O1) and 843 (842 for A2) bp were amplified in the same tube using the following ABO primers (Oswel, UK): mo-46: 50 -CGGAATTCACTCGCCACTGCCTGGGTC TC-30 ; mo-57: 50 -CGGGATCCATGTGGGTGGCACCCTGC CA-30 ; mo-101: 50 -CGGGATCCCCGTCCGCCTGCCTTGCA G-30 ; mo-71: 50 -GGGCCTAGGCTTCAGTTACTC-30 . For each reaction 2.5 pmol of each of primers mo-46 and mo-57 and 4 pmol of each of primers mo-101 and mo-71 were mixed with 5 ll (500 ng) genomic DNA in a total volume of 40 ll containing (in final concentration) 0.2 mM dNTPs, 2 mM MgCl2 and 1 unit Taq polymerase in the buffer supplied. Amplification was performed with an initial denaturation at 94°C for 2 min and then 10 cycles of denaturation at 94°C for 10 s, annealing at 63°C for 60 s and extension at 72°C for 1 min followed by 40 cycles of denaturation at 94°C for 20 s, annealing at 61°C for 30 s and extension at 72°C for 1 min. Multiplex PCR products (5 ll) were digested using 0.5 ll (5 U) of each of restriction endonucleases HpaII and KpnI (Invitrogen, Cambridge, UK) in 23 ll containing 0.36 ll BSA (10 lg) and 2.3 ll of 109 buffer BRL React 4. Cleavage products were separated electrophoretically using 4% agarose gel containing ethidium bromide (Sigma, St Louis, MO, USA). Table 1 Digestion patterns for the genotypes identifiable from combinations of the five sub-alleles (A1, A2, B, O1 and O2) Genotypes Digestion products (bp) 87 96 119 137 150 164 204 223 252 309 A1A1 * * A1A2 * * A1O1 * A1O2 A2A2 A2O1 * * * * * * * * * A2O2 * * * A1B * * * 2 * * * * * * * * * * AB 3 Results BB BO1 3.1 Phenotypes of the blood samples BO2 The phenotypes of the 355 blood samples used in this study were A1 (46), A2 (31), A1B (6), A2B (4), B (97) and O (171). * * * * O1O1 * * O1O2 * * O2O2 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Thirteen of the fifteen possible types were identified in our samples 123 306 M. M. El-Zawahri, Y. A. Luqmani df 15, P [ 0.90). The frequencies of the five alleles in the Kuwaiti sample population are ABO*A1 = 0.0746, ABO*A2 = 0.0592, ABO*B = 0.1676, ABO*O1 = 2 0.6831 and ABO*O = 0.0155. The overall allele frequencies of the three major alleles A, B and O are 0.1338, 0.1676 and 0.6986, respectively. When compared by chisquare test, these allele frequencies were comparable to those calculated from 18,555 Kuwaiti donors taken from Kuwait Central Blood Bank database. 4 Discussion 310 281/271 234 194 BO2 O1O2 A2A2 A1O2 A1A1 A1A2 BB A1B A1O1 BO1 O1O1 A2O1 A2 B 118 M Fig. 1 Gel electrophoretograms of the 13 genotypes which could be detected amongst the 335 Kuwaiti DNA blood samples tested using multiplex PCR–RFLP as described in Sect. 2. Lane M shows molecular size marker, U 9 174RFDNA/HaeIII ladder; this strip belongs to the same gel as the one shown for O1O1 and is included as an indication only for the fragment sizes Table 2 Phenotypes and frequencies of detected genotypes of the ABO locus using a multiplex PCR–RFLP method in 355 blood samples from Kuwaiti donors ABO ABO Observed phenotype genotype Number detected A1 1 (0.28) 1.98 (0.56) 6 (1.69) 3.14 (0.88) 1 AO 38 (10.71) 36.18 (10.19) A1O2 1 (0.28) 0.82 (0.23) A2A2 1 (0.28) 1.24 (0.35) A2O1 30 (8.45) 28.71 (8.09) A2O2 0 0.65 (0.18) A1B A2B 2 B (0) Population Allele frequencies p A q B Reference O r (1.69) 8.88 (2.5) AB 4 (1.13) 7.04 (1.98) Kuwaiti 0.1338 0.1676 0.6986 BB 12 (3.38) 9.97 (2.81) BO1 Saudi Arabian 0.1663* 0.1197* 0.7140* [30] 79 (22.25) 81.29 (22.9) Bahraini 0.1410 0.1570 0.7040 [31] 6 (1.69) 1.84 (0.52) Iraqi 0.2120* 0.1770 0.6611* [32] (46.66) 1 Present study 1 167 O1O2 4 (1.13) 7.52 (2.12) O2O2 15 Iranian Lebanese 0.2223** 0.3326** 0.1695 0.0996** 0.6082* 0.5680** [33] [34] 0 355 (0) (100) 0.09 355 (0.02) (100) Palestinian 0.2790** 0.1250* 0.5930* [35] Jordanian 0.2700** 0.1300* 0.6000* [36] Egyptian 0.1880* 0.1490* 0.6630 [37] Sudanese 0.1920** 0.1400* 0.6680* [37] OO (47.04) 165.65 Allele frequencies: ABO*A1 = 0.0746; ABO*A2 = 0.0592; ABO*O2 = 0.0155 ABO*B = 0.1676; ABO*O1 = 0.6831; (v2 = 10.015, df 15, P [ 0.90). Two of the combinations (A2O2, O2O2) were not found 123 Table 3 Allele frequencies of the ABO gene in Kuwaitis in comparison with neighboring populations 6 BO2 Total Number Frequency (%) A1A2 A1B O Frequency (%) A1A1 1 A2 Expected This is the first report on the frequency of A2 and O2 alleles in Arabian countries. The proposed study was designed so as to provide insight on the molecular genetic profile of A1, A2, B, O1 and O2 alleles of the ABO locus in 355 Kuwaiti healthy donors using a multiplex PCR–RFLP technique [28]. This method would miss other minor A or B genotypes. Genotyping was performed initially using PCR and restriction enzyme analysis based on the mutation at nucleotide 261 (O vs. A and B) and nucleotide 703 (A vs. B) [12]. This was subsequently expanded to include detection of the C526G mutation as suggested by Grunnet et al. [17] to detect the presence of the O2 allele. The assignment of the A2 allele was based on the C467T mutation [18] and nucleotide 1060 deletion [28]. All allelic combinations were observed in this group except A2O2 and O2O2. This observation is not unusual given the frequency of these alleles and the size of the study sample. The frequencies of the five alleles within the study Kuwaiti sample population were ABO*A1 = 0.0746, ABO*A2 = 0.0592, ABO*B = 0.1676, ABO*O1 = 0.6831 and ABO*O2 = 0.0155. The highest frequency is O1 followed by B, A1, A2 and O2, respectively. Unfortunately, there are no complete reports about the frequencies of these five alleles in the neighboring populations from which the Kuwaiti population is presumed to have originated. However, the frequencies of the three major alleles (pA, qB and rO) calculated from the results of the present study are compared with published * P \ 0.05; **P \ 0.01 Genotyping of ABO alleles in Kuwait 307 data [30–37] on populations from neighboring countries (Table 3). The studied Kuwaiti population was evidently distinguished from the neighboring populations from which it was originated. There is a statistically significant difference in allele frequency distribution between the Kuwaiti population and all of the neighboring countries except Bahrain. The frequencies of the three alleles in both Kuwaiti and Bahraini populations are in the order of rO [ qB [ pA, whilst the order is rO [ pA [ qB for the remaining neighboring countries (Table 3). From a purely scientific point of view, chemical analysis of the group O antigen reveals that from a structural perspective it is the simplest blood group and it serves as the backbone for the synthesis of increasingly complex A, B and AB. These latter blood groups evolved by adding other sugar onto the basic O sugar. Thus if the mutations that produced the A and B antigens are ancient, the gene for blood group O is infinitely older. Among the Nomads of the Arabian Peninsula, and the Berbers of the Atlas Mountains, two old populations, the frequency of the blood group O gene is high. Africans, on average, have more O genes and less A genes than do Europeans [4]. So it can be seen that the gene carried by people who are blood group O is ancient by evolutionary standards. Another interpretation regarding the evolution of ABO antigen is that AB antigen was already present in primates [38] and human ABO polymorphisms are probably selected by susceptibility to certain infections. The similarity between Kuwaiti and Bahraini populations may be explained on the basis of their similar development. To obtain a clear picture of the Kuwaiti population, one must consider its origin and background. The Kuwaiti population is a relatively young population that has roots originating from its neighboring countries. Kuwait was first inhabited in the mid 1800s by settlers coming from the Arabian Peninsula. During the 1900s, more and more settlers came to Kuwait expanding its population at a rapid rate. The new settlers originated not only from the Arabian Peninsula but also from Iraq and Iran further diversifying the genetic pool. Accordingly, the Table 4 Frequencies of A1, A2, B, O1 and O2 alleles of the ABO gene in the Kuwaiti population in comparison with some worldwide populations Population Kuwaiti population is composed of multiplex Kuwaiti families from three major Asian ancestral populations (from Saudi Arabia, Iraq and Iran) and other minor Asian– African ancestral populations (from Lebanon, Syria, Palestine, Jordan, Egypt and India). The nucleus population of the Kuwaiti State, then, originated from small subpopulations forming a new heterogeneous population. This new population has increased rapidly over the last five decades from 0.299 million to nearly 1 million Kuwaiti nationals. Due to the homogeneity and close social structure, each individual appears to be exposed to a relatively common environment. Therefore, the present study shows that there are ethnic variations distinguishing this population from other populations in neighboring countries with similar ethnic background as well as from other populations. Table 4 shows a comparison between the allelic frequencies of A1, A2, B, O1 and O2 in the Kuwaiti population and some worldwide populations [28, 39–44]. The frequency of A2 allele in the Kuwaiti population is 5.92%, which is similar to the European percentage (6.2%) and significantly more than the Caucasian percentage (1.888%). A2 alleles are mainly found in Europe and the Near East and Africa [45]. This overall allele frequency usually does not exceed 10% in Caucasian populations and is very low (\1%) in Oriental populations [24, 40]. O1 and O2 alleles were found in 97.77 and 2.23%, respectively, in individuals with phenotype O; with frequency of 1.55% and therefore O2 is a rare allele in the Kuwaiti population. This frequency is similar to the Caucasian [41] and English [44] populations. Reports described that the O2 allele occurred at a frequency of 3.7% in Danish [17] and 3.33% in Swedish [28] populations. In Chinese [39] and Japanese [40] population O2 was not detected. Molecular genotyping methods have several advantages. This genomic DNA typing method provides a reliable result. Since ABO blood group recording is very prevalent, this approach obviously increases the value of this blood group system in forensic suspect screening, paternity testing and anthropologic investigation [4, 5]. This method can also help to elucidate the basis of unusual ABO blood Reference number ABO alleles A1 A2 B O1 O2 Kuwaitis (n = 335) Present study 0.0746 0.0592 0.1676 0.6831 0.0155 Chinese (n = 315) [39] 0.1920 0 0.1680 0.6300 0 Japanese (n = 340) [40] 0.2660 0 0.1900 0.5400 0 Caucasian (n = 170) [41] 0.1880 0.0170 0.1080 0.6710 0.0170 European (n = 300) [42] 0.2150 0.0620 0.1120 0.5830 0.0280 German (n = 169) [43] 0.2130 0.0770 0.0473 0.6420 0.0207 English (n = 86) [44] 0.1980 0.0750 0.1050 0.6050 0.0170 Swedish (n = 150) [28] 0.1900 0.0733 0.1033 0.5967 0.0333 123 308 groups such as cis-AB and Bombay phenotypes or variant O alleles. In cis-AB phenotype, A and B genes are inherited simultaneously on one chromosome resulting in an offspring inheriting three ABO genes instead of two [46]. In individuals of the Bombay phenotype, the red cells and secretions express no A, B, or H antigens, although A and/ or B alleles are present. 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