Download Data Standards

Module 2
Preparing for
Data Submission
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Preparing for Data Submission:
Overview
Module 2 provides an overview of the following:
• Accessing the DPCC Portal
• Data Standard References and
Submission Templates
• Identifying the associated DPCC Project
Identifier with the submission data
• Selecting a Submission Method:
• Bulk Submission
• Interactive Submission
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Accessing the DPCC Portal
• DPCC Portal URL: http://dpcc.niaidceirs.org/
• Center Coordinators and Data Managers have existing DPCC Portal
access
• New users can request access via the Request Access link located on the
login page of the DPCC Portal
• Email [email protected] for forgotten usernames and passwords
• New usernames and/or passwords are provided via email and cannot be
provided over the phone
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Requesting a New User Account: Step 1
1
Go to the DPCC Portal URL:
http://dpcc.niaidceirs.org
Click Request Access
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Requesting a New User Account: Step 2
• Complete the Access Request Form
2
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Requesting a New User Account:
Steps 3 & 4
• Enter the CAPTCHA code and click Submit Request
3
• Center Coordinators provide DPCC with approval to create
requested user accounts
4
Once approved, login here:
http://dpcc.niaidceirs.org/
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Accessing Data Standard References
and Submission Templates
To review the Data Standard Reference and download Submission
Templates, navigate to the Data Standards page by selecting Data
Standards under the Help tab on the DPCC Portal
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Data Standards Page
• The Data Standards page contains a Standard Reference PDF and CSV
Submission Template under each data type
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Data Standards Page:
Submission Types
• Surveillance
• Reagents
• Animal Surveillance
• Antibody Reagent
• Human Surveillance
• Plasmid Reagent
• Protein Reagent
• Derived Analysis
• Virus Reagent
Frequently check the
Data Standards page
for the recent version
of Data Standard
References
• Serological Data
• Viral Isolate Data
• Sequence Data
• Sequencing
• Sequencing Request
• SRA Run
• SRA Analysis
• Project Registration
• BioProject Registration
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Data Standards Page:
Data Dictionaries
The following Data Dictionaries are included on Data Standards page
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Data Standard References
and Submission Templates
• Standard References are in PDF
format and serve as guides for each
data type the DPCC accepts;
containing formatting and standard
explanations
• Submission Templates in CSV
format and are the standard
template files used for data
submission entry
NOTE: Do not make changes to the CSV template file headers
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Identifying the Project Identifier: Step 1
• Every submission must be associated with one Project Identifier Code
(i.e. Project_Identifier)
• Project Identifiers are assigned by NIAID and the DPPCC
• Data will not be accepted without a Project Identifier
• To locate your Project Identifier, follow steps 1 through 3
Click Center Projects under the Resources tab on the DPCC Portal
1
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Identifying the Project Identifier: Step 2
2
• View the Project Identifier column
18
.
Identifying the Project Identifier: Step 3
3
• Click the green icon to expand the row to view more details
under the Center Project
• Click the red icon to return to the condensed view of the table
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Selecting a Submission Method:
Bulk or Interactive - Summary
Bulk Submission
Interactive Submission
• Allows submission of 50 samples
or more
• Limited to submission of 50
samples or less
• Automatically validates and
submits data to the DPCC
• Provides instant validation
• Summarizes errors via email
• Identifies specific errors
• Allows editing and correcting of
errors directly from the Interactive
Submission Page
Both methods follow the same data requirements listed within the Data
Standard References
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Selecting a Submission Method:
Bulk or Interactive - Detailed
Bulk Submission
Best for
Web interface
options
Requirements
Validation
process and
correcting
errors
Interactive Submission
• Submitting more than 50 samples at a time
• Receiving processing status and errors via
email notification
• Submitting a small number of samples (50 or less)
• Catching errors while entering data
• Opportunity to validate data before submitting
• Drag and drop
• Choose file(s) to upload
• Single Sample
• Multiple Samples (Web Form)
• Multiple Samples (CSV Template)
• Upload in bulk with any number of samples
• Data must follow the guidelines of the Data
Standard References
• Accepts only .CSV or .ZIP files
• Enter and edit single or multiple samples in a web
form or CSV template
• Data must follow the guidelines of the Data
Standard References
• Automatically validation; only data without
errors are submitted to the DPCC
• Errors are reported via an email notification
containing the data with errors and a
detailed report of the specific errors
• Email notification sent for successful
submissions
• Validation process is an optional step before
submitting data
• Correct errors immediately in the Interactive
Submission web form
• All errors must be addressed before data can be
submitted
• Email notification sent for successful submissions
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