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Genomic Data Manipulation
Spring 2010
Calendar
Monday
Jan. 24-28
Jan. 31-Feb. 4
Feb. 7-11
Feb. 14-18
Quantitative methods:
descriptive statistics
Introduction to Python: data types,
collections, operators, and primitives
Python: references and functions
Programming for bioinformatics:
regular expressions
Feb. 21-25
Feb. 28-Mar. 4
Mar. 7-11
Mar. 14-18
Mar. 21-25
Mar. 28-Apr. 1
Apr. 4-8
Apr. 11-15
Apr. 18-22
Apr. 25-29
May 2-6
May 9-13
- Holiday Genome sequencing: obtaining and
processing existing sequence data
Metagenomics
- Holiday Microarrays, data sources and formats
Epigenetics
Protein structure, domains, and
proteomics
Genetic interactions
Paper presentations:
Biological networks and systems biology
Paper presentations:
Sequencing and metagenomics
Paper presentations:
Data integration and translation
Project presentations
Wednesday
Quantitative methods:
inference and hypothesis testing
- Snow Programming for bioinformatics:
modules, files, and data I/O
Programming for bioinformatics:
data transfer, file utilities, and databases
Computational project management,
command environments and tools
High-throughput sequencing:
what to do with new data
Comparative genomics,
molecular evolution
- Holiday Microarrays, data processing and
analysis
Regulatory interactions: TFDBs,
microRNAs, binding sites, etc.
Protein-protein interactions
Host-pathogen interactions
Paper presentations:
Biological networks and systems biology
Paper presentations:
Sequencing and metagenomics
Paper presentations:
Data integration and translation
Project presentations