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150. Woodruff, D.S. Biodiversity: conservation and genetics. In: Environment, Science and Technology: The Challenge of the 21st Century. Vol. 1, Proceedings of the 2nd Princess Chulabhorn Science Congress. Bangkok, Thailand, November 2-6, 1992. Chulabhorn Research Institute, Bangkok, pp. 589-598. (1999d). REVIEW ARTICLE A 149 BIODIVERSITY: CONSERVATION AND GENETICS DAVID S. WOODRUFF Department of Biology University of California, San Diego La Jolla, California 92093-0116 USA 1. INTRODUCTION The biodiversity of Thailand is the country's most undervalued and neglected resource, both biologically and economically.l Yet the nation's plants and animals, the communities they form, and the ecological services they provide are major assets that have direct bearing on the quality of life today and in the future. Much of the Twentieth Century was devoted to building a global consensus on the value of nature conservation, and even in Thailand where environmental damage has been enormous, the century closes with increased recognition that nature conservation is in the national interest. Government condoned environmental destruction and degradation is increasingly unacceptable to the population at large and major first steps have been taken to begin to protect what remains of the national heritage. Although this increased love and appreciation of nature are critical prerequisites for environmental conservation they are unfortunately insufficient to insure future generations the wealth and services of nature. Attention in Thailand and elsewhere must now shift to developing and implementing the science and technology of biodiversity conservation and community restoration. Environmental management for human welfare requires more than just a change in societal and political attitudes: nature, now disturbed, needs our active interventive stewardship. The purpose of this paper is to draw attention to the hitherto widely ignored genetic aspects of biodiversity conservation that will require more attention in the next century. Integrating genetics into biodiversity conservation efforts constitutes one of the great challenges of the Twenty-first Century -- a fitting focus for the Chulabhorn Research Institute and this Congress on environment, science and technology. 2. BIODIVERSITY, GENETIC DIVERSITY AND FUTURE LIFE ON EARTH The biosphere is that portion of the planet where physical conditions permit life. These conditions, of temperature, oxygen concentrations, etc., occur and persist only because of the activities of living organisms over the last 3.5 billion years. This fact, that life sustains itself on an otherwise inhospitable planet, provides the most important argument for the conservation of nature. The future habitability of our only home depends on our living in harmony with the planet's other organisms. The biological diversity (biodiversity for short) of the planet embraces the variety and assemblages of organisms at all levels of taxonomic and ecological complexity. It involves the genetic variants (mutants, strains, races, subspecies) belonging to the same species as well as the arrays of species and their higher taxonomic groupings as monerans, protists, plants, fungi and animals. As very few species can exist alone in nature, biodiversity also embraces the co-evolved multispecies associations and communities responsible for ecosystem functioning. Biodiversity thus embraces far more than just the species which are so often the focus of conservation efforts. Excellent reviews of the status of biodiversity are provided elsewhere.2-5 I will not belabor the nature and magnitude of the global biodiversity crisis. Its significance is underscored by the 1992 UN Conference on Environment and Development - the first true Earth Summit Locally, the situation in Thailand is worse than in many countries: the largest mammals, birds, reptiles and fish are gone or endangereds and the country's stocks of ecological capital have been depleted to the point where human lives are lost and rural communities are becoming dysfunctional. Natural resource based industries like forestry and tourism have been seriously mis-managed for private profit rather than sustainability for the public good. Suffice here to note that species extinctions and community degradation are not inevitable results of development. In Thailand and elsewhere trends are being reversed and biodiversity conservation is beginning to receive national political attention. AIL'ioughmost discussions of the biodiversity crisis focus on habitats and species, conservationists are ultimately concerned with the genetic resources underlying nature. Genetic diversity of individuals, populations and species provides the raw materials from which our domesticated crops, animals and microbes can be artificially selected. The clearest arguments for the valuation of genetic resources come from specific agricultural, pharmaceutical and biotechnological examples.Zf Less thought has been given, until recently, to the role of this same genetic diversity in enabling species to persist, to continue to evolve in nature in response to environmental change. If natural communities with hundreds of interacting species provide valuable ecological services then the genetic underpinnings of wild plants and animals are also of concern to biologists and developers. In the present century biodiversity conservation has been left primarily to ecologists, in the next century nature will also require genetic management. Without such intervention species will continue to be lost and communities collapse. Genetic engineering will have to add population and species-level conservation to its traditional concerns.? The urgent challenge is now to develop the science of conservation genetics together with the appropriate technology to prevent the irreplaceable loss of more species, communities and ecological services. Failure to accept stewardship of the genetic resources underpinning biodiversity wi11leave humans on a duller and more dangerous planet 3. CONSERVATION OF GENETIC DIVERSITY Extinction, as Lande!" has noted, is fundamentally a demographic process influenced by genetic and environmental factors. Before discussing these genetic factors it is important to reiterate his opinion that for wild populations in natural or seminatural environments, demography is likely to be of more immediate importance than genetics in determining population viability. Genetic factors do not figure among the four major courses of extinction (the Evil. Quartet): overkill, habitat destruction and fragmentation, impact of introduced species, and secondary or cascade effects. I I Thus, although genetic factors are major determinants of a population's long-term viability, conservationists can do more for a threatened population in the short-term by managing its ecology. Ecological management is the cheapest and most effective way of conserving genetic diversity. Having noted the interdependence of ecology and genetics in determining a population's viability let us now examine two aspects of the conservation of genetic diversity that require scientific research and technology development. The first involves the mitigation of the effects of genetic erosion in small populations. The second concerns the recognition and genetic management of evolutionarily significant units (species, races, etc.). Genetic Erosion. I follow OuborgI2 in defining genetic erosion as the decrease in heterozygosity and the loss of alleles from a population due to random genetic drift and inbreeding. These inexorable processes that rob small isolated populations of their viability are insignificant in larger populations and in populations connected with one another as a metapopulation by frequent gene flow. Genetic drift (chance loss of alleles during meiosis) leads to decreased heterozygosity and reduced genetic diversity without regard for whether the alleles lost are beneficial or deleterious. Inbreeding (mating of related individuals) also leads to a decrease in the frequency of heterozygotes. It may also lead to an increase of genetic disease as recessive deleterious alleles are exposed in homozygous form. Such alleles. the genetic load of all species, are routinely purged by natural selection in large outbred populations and are rarely noticed. However, when historically outbred populations crash following range destruction and fragmentation, the frequencies of deleterious alleles can increase by drift and inbreeding faster than they can be culled. Genetic erosion thus leads to reduced individual and population viability. In theory, the rate of genetic erosion is simply related to effective population size (Ne) such that the change in frequency of heterozygotes is 1/(2NeJ. An effective population of 10 will therefore lose heterozygotes five times faster than an effective population of 100. Note that in this formulation we are using the effective population size (NeJ not the CCii5US population size (N). Ne is almost always less than N as a variety of life history factors will reduce the number of genetically effective or different individuals in a given population. The predictions of population genetic theory are that small populations lose genetic variations faster than large populations and have lower levels of variation (heterozygote frequency and allelic diversity). Genetic erosion in small recently fragmented populations may thus contribute to their extinction. The potentially deleterious consequences of genetic erosion are predicted by the widely accepted axiom that genetic variability is positively correlated with individual and population fitness. A central premise of evolutionary theory holds that genetic variability (especially additive genetic variation) is a prerequisite for adaptation by evolution. Without the variability to work on natural selection can do little to improve a population's chances of surviving significant environmental change. It follows that small, isolated populations have higher probabilities of extinction than large widespread populations. Although this argument is supported by theory and many observations it is not without its critics and conservationists should be aware of these controversies.U Some species with long histories of inbreeding show little sign of genetic erosion and, in other species, individual fitness does not appear to be related to genetic variability. In still other cases demographic bottlenecks have actually increased the additive genetic variation in a population and thus countered the predicted effects of genetic erosion.l+ It is important to remember that there have been very few studies of genetic erosion in nature. Until more research is undertaken and the apparent paradoxes resolved, genetic erosion must be regarded as a potential but still unproven general enhancing factor in the extinction process. Such scientific uncertainties are typical in conservation biology and no excuse for inaction. The possibility that genetic erosion is already threatening fragmented populations of Thailand's endangered species is too serious to wait for the resolution of the general issues.6,I5-I6 As noted at the outset, managers can take immediate action to relieve the pressures on a population's genetic diversity by confronting the Evil Quartet, by securing the population ecologically. With time, they can begin to monitor population's genetic viability and counter loss of variation with natural or artificial gene flow. Thais should not lose the opportunity to save what is left of their genetic resources by waiting for the development of a better theoretical understanding of the role of genetic erosion in human induced extinctions. Although I have here followed convention in arguing that genetic erosion works primarily by reducing individual fitness it is possible that it could act in other ways. For example, if loss of genetic variation makes individuals more susceptible to environmental variance then genetic erosion will be far more important during this time of major global climatic change than it has been in the past Evolutionarily Significant Units. If populations and metapopulations are the units of ecology, subspecies and species the units of systematists, and races and varieties the units of agriculturalists, what units should conservation biologists focus their attention on. The answer, I believe, does not matter, as long as the units selected involve individuals with a common recent genetic history. Our goal should be to conserve natural evolutionarily significant units (ESUs) regardless of how they originated or their current taxonomic status. Our goal should be to conserve evolutionary potential, a process requiring genetic diversity, rather than very narrowly defmed types or kinds of organisms.8,17 Notwithstanding the need to focus on processes (ecosystem functioning and evolutionarily significant units) it is clear that for the foreseeable future most biodiversity conservation efforts will concentrate on species - the fundamental units of nature. The power of the species-level focus is well illustrated by regional Species Survival Plans, national Endangered Species Acts and the international Convention on International Trade in Endangered Species. Species inventories are used to identify biodiversity "hot-spots" and species distributions are mapped to identify "gaps" in the protected area systems. Species level conservation plans have both strengths and weaknesses. As Thailand is beginning to place more emphasis on species management it is important to review the weaknesses of this approach. First, the theoretical underpinnings of the species concept are still under active development Experts still disagree on just how species originate and how they should be defined.If Numerous species concepts are debated among evolutionary biologists and even the currently most popular biological, cohesion and phylogenetic species concepts may be hard to apply to real world situations. Conservation biologists cannot wait for the resolution of these issues; their energies and the enabling legislation behind their efforts must be unfettered by such scientific debates. Second, the use of the species level approach requires' conservationists to make choices among the many species requiring attention. For pragmatic reasons we must allow that all species are not created equal and carefully select those whose management might conserve whole ecosystems. Such choices are very difficult and different groups around the world are experimenting with programs targeting different types of species including ecologically pivotal keystone species, umbrella species with Iarge area requirements, charismatic megavertebrate flagship andfocal species, and species that are especially vulnerable to human activitles.t? Other groups are trying to identify and conserve ecologically sensitive management indicator species. Almost everywhere evolutionary relics (living fossils) and local endemics are afforded special consideration. Rarity per se may not be a sufflcient criterion to merit interventive management.w With limited resources conservationists in Thailand must now try to objectively establish their priorities for effective biodiversity conservation in the next century. Genetic data, as discussed below, comes into play once the hard choices have been made. Evolutionarily significant units, once selected for conservation management, require prompt genetic assessment. Whatever their current taxonomic designation (species, subspecies, unnamed but isolated geographic race) it is important to verify their genetic integrity and innate variability. The consequences of failing to carry out a full genetic study at this stage can be expensive, embarrassing and lead to loss of genetic resources and extinction. Consider the following examples: • outbreeding depression led to the failure of a reintroduction program involving ibex, Capra ibex, in Czechoslovakia. The program involved genetically distant Turkish and Nubian subspecies; their hybrids were so poorly adapted that the entire population went extinct 8 • outbreeding depression led to reproductive waste (unnecessary deaths) in a spider monkey, Ateles sp., breeding colony when different chromosomal types were inadvertently mixed} 7 • failure to recognize the natural pattern of genetic variation in an endangered Sonoran topminnow, Poeciliopsis occidentalis, in Arizona and Mexico led to a restocking plan with a l,righprobability of failure.l? The prime purpose of genetic screening early in any taxon-based conservation effort is therefore to preclude the inadvertent mixing of well-differentiated groups within a single management program. This is especially important when the program involves both in situ and ex situ efforts and reintroductions and translocations are contemplated. Comprehensive genetic screening will also provide baseline data on innate genetic variation and its partitioning within and between populations (population structure). Traditional taxonomy is often misleading when it comes to defining evolutionarily significant units for conservation management. Most vertebrates and flowering plants received their taxonomic names long before the development of the biological species concept. Even conspicuous, well-known species may require reassessment The magnitude of the genetic difference between the two subspecies of orangutan, Pongo pygmaeus+ and between the West African and the other subspecies of chimpanzee, Pan troglodytest) suggests that they require separate management. Large genetic distances (proportional to evolutionary divergence from a common ancestor) must be taken into account for effective conservation management Genetic relationships between individuals, populations, subspecies and species can be established by a number of laboratory methods. Karyotypes, allozymes, mitochondrial DNA RFLP (restriction fragment length polymorphism) patterns, mitochondrial and nuclear gene sequences have all been used effectively. With sufficient tissue, time, expertise and money the genetic parameters of interest to conservationists can all be estimated. That this was not done routinely in the past reflects a failure of managers to appreciate the risks involved in ignoring genetics and a real shortage of sufficiently motivated geneticists. Another problem is more insidious and reflects the inadequacies of the infant science of conservation genetics. Often laboratory studies provided managers with uninterpretable data or added unacceptable complexities to on-going programs. In this regard it is worth noting that genetic distance data alone may not answer the key question about an ESU's homogeneity. The event of speciation is not simply related to genetic distance: although large distances may indicate significant genetic differentiation accompanied by speciation, small distances do not necessarily indicate that populations are con specific, Interpretation of genetic data for management purposes typically requires a simultaneous assessment of other patterns of variation (morphology, distribution, ecology and behavior). Morphology, the criterion used traditionally to define species is often unreliable, but coupled with genetic patterns permits the recognition of ESUs in some of the taxonomically most challenging syngameons.t I have argued that species generally provide the best focus for taxon-oriented conservation but subspecific variants and unnamed isolated populations (restricted to islands, mountain tops, river basins, etc.) may be equally meritorious. Again, taxonomic status of the target population is less important than the ecosystem and the number of other species that will benefit indirectly from the conservation program. What is important, is that target taxon be genetically defined and representative of some natural ESU. Subsequent management of the ESU would then seek to maintain or restore the genetic variability of the original population(s). Care would also be taken to avoid "enlarging" the ESU by hybridization with individuals from another species or subspecies. Failure to manage genetic integrity along these lines resulted in the contamination of one line of endangered Przwalski's horse with domestic horse genes and may have contributed to the extinction of the dusky seaside sparrow. 22 In a last ditch attempt to save the latter species from the east coast of Florida, the last birds were crossed with a subspecies from the west coast of Florida rather than the more closely related Atlantic coast subspecies from further north. Had genetic relationships among the taxa been established earlier this mistake could have been avoided. In managing threatened ESUs the creation of "generic" populations _ mixtures of previously isolated and well-differentiated subspecies, for example _ should be avoided. It is justified only when there are no alternatives as hybrid or generic taxa are clearly preferable to the groups extinction. Such artificial hybrid taxa and their natural equivalents can not be excluded from conservation consideration simply because they lack racial "purity". Such a notion is obsolete and runs counter to our present appreciation of the importance of conserving as much genetic diversity as possible. It is not the purpose of this paper to discuss the theory and methods of managing genetic diversity once it is identified and characterized. For recent discussions of population viability analysis and metapopulation analysis and the technologies of captive propagation the reader is referred elsewhere.23-29 Suffice it to note that the conservation of genetic diversity requires a multidisciplinary synthetic approach combining the best basic science with the pragmatism of the traditional nature manager. 4. RESEARCH INVOLVING THAI ANIMALS I now offer a few examples from my own research to illustrate the importance of considering genetic factors in biodiversity conservation. The examples were chosen to illustrate three common problems that managers will have to deal with in the next century: proper identification of ESUs, selection of appropriate individuals for reintroduction programs, and assessing levels of variation remaining in remnant populations. In some cases the research was based on proven methods, in others it is frankly experimental. In all cases it involved collaboration between Thai scientists and managers and members of my laboratory group in the U.S. In each case the expertise and technology has or will be transferred to laboratories in Thailand. Proper Identification of Evolutionarily Significant Units. Three studies of freshwater molluscs and their parasites illustrate the importance of proper identification of evolutionarily significant units even though the animals themselves are not the subject of conservation efforts. First, allozyme variation was used to show that 21 nominal species of Thai clams, Corbicula, are actually all members of the same conchologically variable species, C.fluminea.30 This means that an effort to save the clams previously referred to C. erosa and found only in Glaeng district, Rayong province, would betaxonomically unjustified, More generally, the taxonomic revision of the clams indicates that attempts to conserve the traditional "species" for their own sake would have been misguided. Second, a similar allozyme study of a small snail in the Mekong and Mun rivers revealed that "Neotricula aperta" is actually comprised of at least four separate sibling species.t! Misidentification of ESUs in this case has important biomedical implications as one or more members of the species group is the intermediate host of the human blood fluke, Schistosoma mekongi, The third example involves this snail-transmitted parasite which had been confused with the species S. japonicum from Japan, China and the Philippines. Allozyme variation shows clearly that the Thai schistosome is a different species and that it is more closely related to S. malayensis than the widespread S. Iaponicum.n These three examples show how both taxonomic lumping and splitting can affect the definition of ESUs for conservation purposes. Each case involved an animal that was relatively wellknown in Thailand (as a food source, disease vector, or pathogen) but the use of traditional non-genetic taxonomy would have resulted in the adoption of inappropriate units for conservation management. Selection of Appropriately Matched Individuals for Reintroduction. Translocation and reintroduction are increasingly important conservation management tools. Two on-going projects illustrate the need to consider genetic factors in planning such actions. The first case involves the threatened Eld' s browantlered deer, Cervus eldi, and the Royal Forest Department's propagation project at Phu Khieo Wildlife Sanctuary in northeast Thailand. This is within the traditional range of the Southeast Asian subspecies, C. e. siamensis, which has been extirpated in Thailand. Deer moved to Phu Khieo include Laotian C. e. siamensis, and individuals of C. e. thamin, a subspecies centered in Myanmar that may survive in the ranges of western Thailand. Two questions arise: are the Burmese and Siamese subspecies genetically compatible and is it alright to release the western subspecies into the former range of the eastern subspecies? A very preliminary genetic comparison in my laboratory suggests that the two subspecies are more different than expected: 13 differences including 2 transversions were detected among 167 base-pairs of the mitochondrial cytochrome b gene sequence studied (Carlos Garza, pers. comm.). If this result were confirmed and extended then it would seem genetically inadvisable to mix the subspecies. Similarly, it may be preferable to reintroduce Laotian deer to Phu Khieo rather than Burmese as long as the former are available. The second case involves the genetic management of captive gibbons, Hylobates. The Thai Zoological Organization has long had a serious problem with abandoned pet gibbons; in the mid-1980's up to 20 per month would be abandoned at or turned over to the Dusit Zoo, Bangkok. CITES restrictions prevented these animals from being placed in captive breeding programs outside Thailand and the Thai zoos were ill-equipped to house, let alone breed, these threatened apes. One long-term solution under discussion by officials of the Zoological Organization, the Royal Forestry Department, concerned NGO's and primatologists would involve rehabilitating and reintroducing selected individuals to sanctuaries within their former range. One problem with this laudable idea is that the animals themselves are of unknown geographic origin and there is some concern about inadvertently mixing gibbons of diverse origin. White-handed gibbons, H. lar, for example, range over 1500 km from north to south in Thailand and several geographically defined but morphologically indistinguishable subspecies have been named - the effects of releasing northern gibbons into south Thailand and vice versa, and the viability of intersubspecific hybrids are unknown. The solution to this problem is to learn the geographic patterns of genetic variation in this species and use these data to establish the probable region of origin of all candidates for reintroduction. Our first attempt to do this failed; the 252 base-pair segment of the cytochrome b gene used was simply not informative enough.V A second attempt with a more variable gene sequence is now underway and promises to permit the sorting of captive far gibbons into appropriate genetic groups. Assessing Levels of Genetic Variation in Isolated Populations. Managers need to be able to assess the extent and rate of genetic erosion in recently fragmented and isolated populations. This has not been attempted in Thailand or elsewhere to any significant extent because of technical obstacles. Animals had to be darted or captured and bled, and the tissue sample had to be frozen immediately and transported to the laboratory on dry ice or liquid nitrogen. For most free-ranging mammals and birds in remote areas this is too difficult to contemplate. We have overcome these problems by developing a non-invasive genotyping method which uses hair, feathers and even feces as the DNA source.34 We are now demonstrating the method's utility for assessing levels of genetic variation in recently fragmented populations of small mammals in Khlong Saeng Wildlife Sanctuary. At the same time we are testing theoretical predictions about rates of genetic erosion by monitoring these populations for their first 10 years postisolation. The particular populations under investigation became isolated on small islands in Chiew Lam Reservoir wben the River was dammed in 1987. The ongoing extinction processes in these forest fragments are described elsewhere. 15.35-6 It is premature to describe our genetic results and their significance. 5. CONCLUSION The above research projects are suggestive of the urgent and enormous challenge confronting scientists and managers in Thailand. To an outsider like myself it is clear that in the last decade, despite horrific setbacks, there is a net improvement in national efforts to conserve biodiversity. Increased interest among students and academics, increased public perception of the importance of biodiversity, increased interagency cooperation on conservation projects, improved legal framework supporting conservation efforts, improved implementation of government policies (a narrowing of the gap between words and deeds), increased public intolerance for government condoned destruction of natural resources including biodiversity are-among the highly encouraging signs that Thailand will take the necessary steps to conserve her natural heritage, The research priorities and infrastructure needs to meet this challenge are clearly defined in recent reports of the Science Society of Thailand and the Royal Forest Departrnenut-t? what remains to be seen is how fast these recommendations will be addressed and implemented. Thailand is very fortunate in having a Royal Family whose members play major roles in national conservation efforts. Their leadership has enabled numerous foreign scientists like myself to make small contributions to such important national efforts. Meeting the environmental challenges of the Twenty-first Century, as Professor Dr. HRH Princess Chulabhorn correctly noted requires the cooperative efforts of numerous specialists; it has been a privilege to collaborate with my Thai colleagues in their critical endeavor. Environmental conservation and nature protection are global problems and together we must seek both local and global solutions. ACKNOWLEDGEMENTS My collaborative research in Thailand would not have been possible without permission of the National Research Council and the collaboration and support of numerous colleagues including: Warren Brockelman, Alongkorn Mahannop, Chira Meckvichai, Jarujin Nabhitabhata, the late Seub Nakhasathien, Schwarm Tunhikorn, Suchart Upatham and Sawai Wanghongsa.This work was supported by grants from U.S.A.I.D., U.S.N.S.F. and the University of California. REFERENCES 1. Science Society of Thailand (1991) Biodiversity in Thailand. Research Priorities for Sustainable Development. Chulalongkorn University, Bangkok. 24 p. 2. McNeely, J.A., Miller, K.R., Reid, W.V., Mittermeier, R.A. and Werner, T.B. (1990) Conserving the World's Biological Diversity. IUCN, WRI, CI, WWF-US, The World Bank, Gland, Switzerland. 193 p. 3. Wilson, E.O. (1992) Cambridge. 424 p. 4. Solbrig, O.T., ed. (1991) From Genes to Ecosystems: Agenda for Biodiversity. Int'I. Union BioI. Sci., Cambridge. 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Population Management for Survival and Recovery, Univ. of Chicago Press, in press. 30. Kijviriya, V., E.S. Upatham, V. Viyanant and D.S. Woodruff Amer. Malacol. Bull. 8:97-106. (1991) 31. Staub, K.C., D.S. Woodruff, E.S. Upatham and V. Viyanant Amer. Malacol. Bull. 7:93-103. (1990) 32. Woodruff, D.S., A.M. Merenlender, E.S. Upatham and V. Viyanant (1987) Am. J. Trop. Med. Hyg. 36:345-354. 33. Garza, J.C. and D.S. Woodruff (1993) Molec. Phylogen. Evol. 2(1): 34. Woodruff, D.S. (1993) Non-invasive genotyping of primates. Primates, in ,press. 35. Lynam, A.J. (1992) Abstracts. p. 289. 2nd Princess Chulabhorn Science Congress. 36. Lynam, A.J., Srikwan, S. and Woodruff, D.S. (1992) 18th Congress on Science and Technology of Thailand Abstracts. pp.570-571. 37. Santisuk, T., et al. (1991) Plants for Our Future: Botanical Research and Conservation Needs in Thailand. Royal Forest Dept, Bangkok. 48 p.