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TAB S4 Seventy-eight (filtered out of 173) potential symbiotic genes in “Ca. Synechococcus spongiarum” genomes. They were found to be orthologous and unique to the four “Ca. Synechococcus spongiarum” genomes. Genes are described according to the SEED annotation in their respective genomes. NA, not available. 15L SH4 142 SP3 COG annotation 1 27kDa outer membrane protein 27kDa outer membrane protein 27kDa outer membrane protein 27kDa outer membrane protein COG1651 2 membrane protein, putative hypothetical protein membrane protein, putative hypothetical protein COG5395 3 hypothetical protein hypothetical protein hypothetical protein hypothetical protein COG2932* 4 hypothetical protein hypothetical protein hypothetical protein hypothetical protein NA 5 hypothetical protein hypothetical protein hypothetical protein hypothetical protein NA 6 hypothetical protein hypothetical protein hypothetical protein hypothetical protein NA 7 Outer membrane receptor proteins, mostly Fe transport TonB-dependent receptor TonB-dependent receptor TonB-dependent receptor NA 8 FIG048548: ATP synthase protein I2 FIG048548: ATP synthase protein I2 FIG048548: ATP synthase protein I2 FIG048548: ATP synthase protein I2 NA 9 FOG: TPR repeat FOG: TPR repeat hypothetical protein FOG: TPR repeat NA 10 Nickel-dependent superoxide dismutase (EC 1.15.1.1) Nickel-dependent superoxide dismutase (EC 1.15.1.1) Nickel-dependent superoxide dismutase (EC 1.15.1.1) Nickel-dependent superoxide dismutase (EC 1.15.1.1) NA 11 Phycobilisome phycoerythrinassociated linker polypeptide Phycobilisome rod linker polypeptide, phycocyaninassociated Phycobilisome phycoerythrinassociated linker polypeptide Phycobilisome phycoerythrinassociated linker polypeptide NA 12 Phycobilisome protein Phycobilisome core component Phycobilisome protein Phycobilisome core component NA 13 Cell division protein ZipN/Ftn2/Arc6, specific for cyanobacteria and chloroplast Cell division protein ZipN/Ftn2/Arc6, specific for cyanobacteria and chloroplast Cell division protein ZipN/Ftn2/Arc6, specific for cyanobacteria and chloroplast Cell division protein ZipN/Ftn2/Arc6, specific for cyanobacteria and chloroplast NA 14 hypothetical protein Sll1884 protein Sll1884 protein hypothetical protein NA 15 Mobile element protein hypothetical protein Mobile element protein hypothetical protein NA 16 possible Protein phosphatase 2C possible Protein phosphatase 2C possible Protein phosphatase 2C possible Protein phosphatase 2C NA 17 possible Zinc finger, C3HC4 type (RING finger) possible Zinc finger, C3HC4 type (RING finger) possible Zinc finger, C3HC4 type (RING finger) possible Zinc finger, C3HC4 type (RING finger) NA 18 putative phycobiliprotein linker putative phycobiliprotein linker Phycobilisome rod linker polypeptide, phycocyaninassociated Phycobilisome rod linker polypeptide, phycocyaninassociated NA 19 Rod shapedetermining protein MreD Rod shapedetermining protein MreD Rod shapedetermining protein MreD Rod shapedetermining protein MreD NA 20 Small primase-like proteins (Toprim domain) Small primase-like proteins (Toprim domain) Small primase-like proteins (Toprim domain) Small primase-like proteins (Toprim domain) NA 21 Two-component response regulator Two-component response regulator Two-component response regulator Two-component response regulator NA 22 All3116 protein All3116 protein hypothetical protein hypothetical protein NA 23 Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog Chlorophyll a(b) binding protein, photosystem II CP43 protein (PsbC) homolog NA 24 FIG01150038: hypothetical protein hypothetical protein hypothetical protein FIG01150038: hypothetical protein NA 25 FIG01150241: hypothetical protein FIG01150241: hypothetical protein FIG01150241: hypothetical protein FIG01150241: hypothetical protein NA 26 Glycerol dehydrogenase related protein Slr0730 Glycerol dehydrogenase related protein Slr0730 Glycerol dehydrogenase related protein Slr0730 Glycerol dehydrogenase related protein Slr0730 NA 27 Possible restriction /modification enzyme Possible restriction /modification enzyme Possible restriction /modification enzyme Possible restriction /modification enzyme NA 28 Small GTP-binding protein domain Small GTP-binding protein domain Small GTP-binding protein domain Small GTP-binding protein domain NA 29 L-lactate permease hypothetical protein hypothetical protein L-lactate permease NA 3078 hypothetical protein hypothetical protein hypothetical protein hypothetical protein NA * “Ca. S. spongiarum”142 hypothetical gene annotated as COG0681