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WORKBOOK ANSWERS OCR AS/A-level Biology A Exchange and transport Biodiversity, evolution and disease This Answers document provides suggestions for some of the possible answers that might be given for the questions asked in the workbook. They are not exhaustive and other answers may be acceptable, but they are intended as a guide to give teachers and students feedback. Module 3 Exchange and transport Topic 1 Exchange surfaces The need for specialised exchange surfaces 1 Anaerobic respiration. It allows a supply of energy when oxygen is in short supply, e.g. for strenuous exercise when not enough oxygen can be taken in. 2 It is enough for smaller organisms because the diffusion pathway is small and the concentration gradients are favourable. In larger organisms the diffusion pathway is too long and the concentration gradients are too small, so it is inefficient. (This is a comparative question so both parts are needed.) 3 Surface area to volume ratio; impermeable (or reduced permeable) body surface; need to maintain concentration gradients of the two gases so gas will continue to move in the correct direction down the concentration gradient. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 1 4 Feature Problem Adaptation Concentration gradient Gases must diffuse down a concentration gradient Mechanisms such as breathing to keep gases moving on to the surface and outwards away from the surface Permeability of surface External surface is impermeable to the gases Permeable surface inside the body allows diffusion through the surface into or out of the body Moist surface Organisms living on land live in a dry atmosphere, making diffusion difficult Moist surface inside the body allows gases to dissolve first Surface area to volume ratio Larger organisms have a reduced surface area to volume ratio and so less gas can diffuse across the surface Large internal surface area provided to ensure efficient diffusion across the surface Gas exchange and ventilation in mammals 1 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 2 2 In the medulla oblongata (in the brain), the inspiratory centre sends nerve impulses down the nerves to the diaphragm and intercostal muscles. (A2: sympathetic and parasympathetic pathways are involved.) 3 A = bronchus, B = internal intercostal muscles, C = external intercostal muscles, D = lung, E = diaphragm, F = bronchioles, G = pleural cavity, H = pleural membranes, I = trachea, J = larynx. 4 Alveoli are small swellings on the air sac that enlarge the total surface area greatly and provide a thin surface for exchange. 5 Feature Requirement Adaptation Surface area Large surface area In humans, the alveoli increase the surface area to approximately 70–100 m2 Thickness of the surface Small diffusion pathway The alveolar wall is just one cell thick and the cells are flattened (squamous) epithelial cells Blood supply An efficient transport medium to bring waste carbon dioxide from the body cells to the surface and remove the oxygen as soon as it has diffused in The blood system provides an efficient transport medium. It transports oxygen away from the surface quickly and brings carbon dioxide to the surface. This maintains the diffusion gradient for both oxygen and carbon dioxide Ventilation mechanism A method of delivering fresh oxygen and removing waste carbon dioxide is needed to maintain the diffusion gradient A flow of fresh gases into the gas exchange site brings in fresh oxygen and the removal of waste carbon dioxide to the outside © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 3 6 Tissue Structure found in Function Cartilage C-shaped rings in trachea; complete rings in bronchi and larger bronchioles of airway Strength and support of the airway Ciliated epithelium The walls of the trachea, bronchi and larger bronchioles Cilia move mucus, which contains trapped dust and bacteria that enter the airway, and moves it back to the top of the trachea Goblet cells Between ciliated cells lining the walls of the trachea, bronchi and larger bronchioles Produce mucus Smooth muscle The walls of the trachea, bronchi and larger bronchioles Allows airway to expand during exercise and maintains the tone of the airways Elastic fibres Walls of the trachea, bronchi and all bronchioles and alveoli Allows elasticity of the airways and lung for expansion during inhaling and passive recoil during exhaling Squamous epithelial cells Alveoli only Provide a thin, flexible layer for an efficient and large gas exchange site. Secrete surfactant to prevent the walls sticking together 7 1.5 × 20 × 1/100 = 0.3 litres of oxygen per breath, so over 1 minute (20 breaths) = 6.0 litres. The volume of oxygen per kg mass is 6.0/60 = 1/10 = 100 cm3/kg. 8 The breathing rate increases as carbon dioxide levels rise. This is because the breathing rate is largely controlled by carbon dioxide levels detected by carbon dioxide sensors and received by the breathing centre in the brain. Nerve impulses from here send signals to the intercostal muscles and the diaphragm. 9 Tidal volume is the volume of air that is normally breathed in or out when at rest, whereas vital capacity is the maximum volume of air that can be breathed in or out in a single breath. 10 A small volume of air is always retained within the lung because otherwise the lung would collapse completely. This volume is called the residual volume and it cannot be measured. Residual volume together with vital capacity gives the total lung capacity. 11 a Mean tidal volume = 0.56 Mean breathing rate = 21.33 b An increase in carbon dioxide within the chamber of air of the spirometer. Reject ‘exercise’ as this is unlikely when using a spirometer unless the set-up is more complex, which is not stated in the question. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 4 Gas exchange and ventilation in bony fish and insects 1 The floor of the buccal cavity lowers; increases volume of the cavity; pressure is now lower than water outside; draws water in through the mouth; mouth closes; floor of buccal cavity is raised; pressure increases so water is forced into the gill cavity; pressure in the gill cavity rises; forces open the operculum; water is forced out; the cycle is repeated. 2 As the water flows into the gill cavity and across the gills at the start of every ventilation cycle, it ensures a continual supply of water with high % of dissolved oxygen. The carbon dioxide produced is removed at the end of the ventilation cycle when the operculum opens and the water leaves. Exam-style questions 1 a Organism D. b It will have a limited ability to take in any molecules such as oxygen by diffusion, so it cannot supply the needs of the cell. a A large surface area provided by the tracheae and tracheoles; moist surface and thin surface. b There is no connection to the blood transport system as the trachea form a network of tracheoles across the whole body and so oxygen-containing air is delivered straight to the tissues via the tracheae and tracheoles. c Advantage: direct delivery of oxygen to the tissues and direct removal of carbon dioxide. 2 Disadvantage: the system limits the size of the organism as the tracheoles can only successfully deliver enough oxygen if the diffusion distance is short and the pumping mechanism of the abdomen keeps the air flowing. This can only occur over a relatively short distance. Topic 2 Transport in animals Transport systems in multicellular animals 1 Living cells need a supply of oxygen and nutrients and to remove waste products; larger organisms have an unfavourable diffusion gradient/the diffusion distance is larger and so inefficient/too slow; there is a decreasing surface area to volume ratio as the organism gets larger, so demand for oxygen and nutrients is greater than the possible supply; as activity levels increase, the amounts of oxygen and nutrients needed also increase (as do © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 5 the waste products), and are too great to be supplied to all parts/cells of the body by diffusion alone; on land, the surface area is too dry for efficient diffusion, which needs a moist surface. Circulatory systems 1 A = lung capillaries, B = right atrium, C = right ventricle, D = systemic capillaries, E = left ventricle, F = left atrium, G = pulmonary circuit, H = systemic circuit. 2 The blood can maintain a relatively high pressure and speed because it only flows through a capillary network once before returning to the heart. In a single circulation, it has to flow through two capillary networks in each circuit so it loses a lot of pressure and slows considerably. Higher pressure and speed mean concentration gradients are retained more efficiently, so exchange is more efficient. 3 Fish are ectotherms and do not need to supply energy to maintain a constant body temperature; they live in water, which has a relatively stable temperature and so they have a low metabolic rate; a single circulatory system is efficient in this situation. 4 The blood (haemolymph) in insects does not carry oxygen to the tissues or collect waste carbon dioxide because the system of tracheae and tracheoles carries out this function. Therefore, there is no need for a highly efficient circulatory system. In other animals, the blood must deliver oxygen efficiently to the tissues and carry away waste carbon dioxide. Blood vessels 1 Type of vessel Structure Role in transport Arteries Thick wall of collagen (tunica adventitia), thick muscle and elastic tissue (tunica media) and narrow lumen lined with endothelium Carry blood under high pressure away from the heart Arterioles Small vessels, wall of muscle and elastic Connect arteries to capillaries, so pressure lower Capillaries Large number of very small vessels, wall of single squamous cells and a narrow lumen Exchange site as they form a very thin layer; slow down blood flow and reduce blood pressure to make exchange more likely Venules Small vessels, little muscle and elastic Connect capillaries to veins, so very low pressure © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 6 Type of vessel Structure Role in transport Veins Thin wall with very little muscle and elastic tissue (tunica media) and large lumen lined with endothelium and valves along length Carry blood under very low pressure back to the heart; valves maintain a one-way flow Blood, tissue fluid and lymph 1 Feature Blood Tissue fluid Lymph Cells Red and white cells, platelets Only a few white cells, but no red cells or platelets Many white cells, but no red cells or platelets Fluid Plasma Plasma As plasma Dissolved solutes Amino acids, sugars, fatty acids, carbon dioxide Amino acids, sugars, fatty acids, carbon dioxide Amino acids, sugars, fatty acids, carbon dioxide Proteins Clotting factors, hormones, plasma proteins, immunoglobulins No large protein molecules Immunoglobulins, antibodies Location In blood vessels Bathing the cells of the tissues In lymphatic vessels 2 They contain macrophages and many white cells, which help to fight infection. 3 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 7 The mammalian heart and the cardiac cycle 1 A = superior vena cava, B = semilunar valves, C = right atrium, D = atrioventricular (tricuspid) valve, E = inferior vena cava, F = right ventricle, G = septum, H = left ventricle, I = tendons (chordae tendineae), J = atrioventricular (biscupid) valve, K = left atrium, L = pulmonary vein, M = pulmonary artery, N = aorta. 2 a The atria have thinner walls — they receive blood with lower pressure and have only a short distance to pump the blood (into the ventricles). The ventricles have to contract strongly to pump high pressure blood around either the pulmonary circuit (right ventricle) or the whole body (systemic circuit) in the case of the left ventricle. b The left ventricle wall must be much thicker than the right ventricle wall in order to pump blood around the whole body. It must also have more muscle than the right ventricle wall. 3 The atrioventricular valves are between the atria and the ventricles and the semilunar valves are between the ventricles and the two major arteries. They prevent the backflow of blood and ensure the blood continues to flow back to the heart. (The large lumen ensures that enough blood is returned to the heart even though the flow is much slower than in arteries. The output of blood from the heart must be the same as the inflow of blood to the heart. Tendons attach the atrioventricular valves to the ventricle wall to help withstand the high pressure as the heart muscle contracts, preventing the valves turning inside out.) © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 8 4 5 60/0.8 = 75 beats/s. (Award 1 mark for the working out and 1 mark for the correct answer.) 6 a The artery walls stretch when high pressure blood from the heart enters the arteries. b When the heart relaxes, the blood flow slows so the elastic tissue recoils, exerting extra pressure on the blood and helping to even out the flow between heart contractions. This is not the same as a contraction. 7 Myogenic (the muscle beats without any stimulation at all). 8 a Sympathetic and parasympathetic. b Sympathetic: speeds up the heart rate so the heart beats faster. Parasympathetic: slows down the heart rate so it beats more slowly. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 9 9 Name of structure Position Role Sinoatrial node (SAN) Pacemaker set in the wall of the right atrium Generates electrical impulses and sets off a wave of electrical activity across the heart muscle of the atria Non-conductive septum Between the atria and ventricles Prevents the impulse travelling from the atria to the ventricles, so the atria contract first Atrioventricular node (AVN) Conductive node at the base of the atria in the septum Delays the electrical signal for long enough for the atria to contract and then allows the signal to travel across the septum Bundle of His Specialised muscle fibres in the central septum of the heart Carry the impulse to the heart apex (at the bottom) so the contraction of the ventricles starts at the apex and squeezes the blood out of the ventricles into the arteries Purkyne tissue Specialised muscle fibres in the outer walls of the heart Carry the impulses back up the outer walls of the ventricles, causing contraction of the ventricles 10 ai Depolarisation of the atria, causing them to contract. a ii Depolarisation of the ventricles, causing them to contract. a iii Repolarisation of the ventricles, causing them to relax. b The number of beats per minute (or how close together or how far apart are the peaks). A fast beat is tachycardia and a slow beat is bradycardia. c Irregular beat; the heart muscle is responding incorrectly to the electrical signals or the signals are not regular; the doctor would conclude that the ECG indicates either damage to the heart muscle or an enlarged heart. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 10 Haemoglobin 1 a Quaternary structure as there are four protein globular chains (two α and two β); each has an iron-containing haem group attached. b The haem allows oxygen to bind to the molecule — one oxygen per haem group, so four oxygen molecules per haemoglobin (4O2 or 8O). 2 The steep increase is due to the increasing ease of taking up oxygen once the initial oxygen molecule is taken up. This initial oxygen distorts the haemoglobin molecule so it becomes easier for the remaining oxygen molecules to be taken up. 3 The partial pressure of carbon dioxide influences the uptake of oxygen. The Bohr effect is: as carbon dioxide partial pressure increases, the affinity of haemoglobin for oxygen reduces (the curve moves to the right). This means that as carbon dioxide levels rise, oxygen is more readily released from the haemoglobin. It is caused by the rise in pH that results from the carbon dioxide increase. 4 The fetal curve is to the left of the adult curve, meaning that the affinity for oxygen is greater than in adult haemoglobin. This is important because the fetus must remove oxygen from the maternal haemoglobin. 5 (1) Dissolved carbon dioxide in the plasma as it is readily soluble. (2) As bicarbonate ions, which are formed by dissociation of carbonic acid in the red blood cells. Carbonic acid forms when carbon dioxide dissolves in water. The bicarbonate ions are then transported into the plasma by the chloride shift — chloride diffuses into the cell from the plasma. (3) By forming carbaminohaemoglobin, a compound formed when carbon dioxide bonds to the haemoglobin molecule. The H+ ions released combine with haemoglobin to form haemoglobonic acid. To do so the oxygen must first be released from oxyhaemoglobin. The advantage is that when carbon dioxide levels are high oxygen is more readily released and the H+ ions are buffered to prevent an increase in acidity. Exam-style questions 1 a Open circulatory system Closed circulatory system Single circulatory system Double circulatory system b Highest = systole; lowest = diastole. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 11 c Systole/contraction causes increased pressure; of the left ventricle wall/muscle; diastole/relaxation so decreasing pressure. d Pressure from behind as the blood pushes onwards; the valves along the length of the veins; prevent backflow; skeletal muscles place pressure on the vessels to force blood onwards. e The capillary wall is thin/only one cell thick; high pressure would damage/burst the capillary; this reduces the chance of tissue fluid build-up/oedema; allows the exchange of materials at the capillaries. 2 Haemoglobin is a pigment found in red blood cells. These cells are also known as erythrocytes. Haemoglobin has a high affinity for oxygen. In the lungs the haemoglobin associates with oxygen to form oxyhaemoglobin. In respiring tissues the oxygen is released by dissociation. In very active tissues the amount of oxygen released can be increased by the presence of more carbon dioxide. This is called the Bohr effect. 3 Initiated in sinoatrial node; no stimulus required; spreads across muscle of both atria; which contract; a short lull as detected by atrioventricular node; travels through bundle of His and Purkyne tissue to heart apex, where ventricular contraction begins; coordination by sympathetic and parasympathetic nerves from the cardiac centre in the brain; sympathetic: speeds up heart rate so the heart beats faster; parasympathetic: slows down heart rate so a slower beat. Topic 3 Transport in plants Transport systems in multicellular plants 1 Plants have a highly branching body that gives a very large surface area to volume ratio in all plants; the metabolic rate of plant tissue is low and so oxygen demand is low; the leaves and stems produce oxygen during photosynthesis in the chloroplasts, reducing further the need for oxygen from outside. 2 Aligned end to end to form a continuous tube; end walls broken down; the walls are lignified so the cells are dead — no cell contents to impede water flow; the lignin strengthens the walls against the high pressure exerted by the flow of water and supports; gaps in the side walls (pits) allow the lateral movement of water. 3 Tracheids and sclerenchyma cells. Both needed for the mark. 4 a Provides strength as well as being a rigid support. b Allows flexibility, e.g. in the stem, which may be important in conditions where the wind provides a sideways force on the plant. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 12 The vascular system 1 Aligned end to end to form a continuous tube; end walls are perforated to form sieve plates; have no nucleus and few cell organelles so can more easily transport assimilates; each sieve tube has a companion cell with which it shares many of the life-supporting processes carried out by the organelles; connect to the companion cells via plasmodesmata. 2 Xylem — dead cells and walls thickened with lignin; phloem — living cells with no wall thickening; xylem — no end walls; phloem — has sieve plates for end walls; xylem — exists as a continuous tube or individual cells; phloem — needs the support of a companion cell to share a nucleus and organelles and sustain cell life. 3 Method of water transport Details of route Function Apoplast Through the permeable cell walls, which offer little resistance Most of the water uses this route; it is efficient as water moves rapidly as if through filter paper Symplast Through the cytoplasm of one cell to another using the plasmodesmata in side walls A continuous flow from one cell’s cytoplasm to another; slower route Vacuolar From one cell vacuole to the next, so passes through cell membrane and tonoplast Allows some control of which molecules pass through 4 It is a band of waterproof (suberin) waxy material that blocks the apoplast route at the endodermis; this prevents flow into the xylem by this route; the symplast route must be taken, so a selection of what enters (water, dissolved ions) can occur. Protein carriers in the endodermis also regulate uptake by active transport. Transpiration 1 a The transpiration stream. b The cohesion of water molecules to each other (they are polar molecules); as water molecules are pulled from above, they pull other water molecules with them; because they are under cohesive forces (stick to each other); the theory is called the cohesion-tension theory because there is tension on the water from above as water evaporates from the leaf. 2 The water molecules must be close together to allow cohesion; a continuous column or stream of water is needed; no air locks can occur; sideways movement to avoid air blockages provided by the pits in the side walls; adhesion of the water molecules to the © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 13 walls of the xylem to ensure water remains in place even when no transpiration is occurring (this avoids gravity causing the column to fall); stomatal pores in the leaves allow both gas exchange and water to leave by evaporation. 3 Because the stomatal pores must be open to allow gas exchange. 4 Factor Requirement Effect on transpiration rate Temperature Needs a water potential gradient from inside leaf air spaces to outside the leaf; the stomata must be open — high temperatures cause stomatal closure which stops transpiration Increasing temperature increases kinetic energy of the water molecules, so they move more rapidly and diffusion increases Movement of air The water potential gradient must be higher inside leaf than outside to allow water to move down the gradient; the stomata must be open Increasing air movement increases transpiration as the concentration gradient is maintained, but a maximum level is quickly met Humidity The diffusion gradient between air outside leaf and the air in the leaf air spaces must be high so that water can diffuse out; the stomata must be open Increasing humidity reduces the water potential gradient, so the transpiration rate falls Light The stomata must be open — in the dark they are closed but open as light increases Increasing light intensity is only effective on rate until all the stomatal pores are open 5 a That the same amount of water is taken up as is lost by transpiration. b Some water is taken up and used by the plant in metabolic processes such as photosynthesis and some water may be produced by the plant’s metabolic processes. 6 No air must get into the apparatus; it must be set up under water to avoid an air lock in the xylem vessels; it must be airtight to stop water loss from the apparatus and prevent air from entering, or water movement will be halted; the leaves of the plant must be dry to prevent a humid atmosphere around the leaves; the apparatus must be allowed to stabilise before taking readings. 7 a 20°C = 28.33 mm/min; 30°C = 55.33 mm/min; 40°C = 27.00 mm/min. b As the temperature increases, the mean distance moved by the bubble increases; up to 30°C/a positive correlation between temperature rise to 30°C and bubble distance moved. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 14 c At 20°C the reading at 3 minutes is incorrectly recorded to whole numbers. All the data must be recorded to the same number of decimal places, in this case to 1 decimal place, so the reading should be 30.0 d As temperatures rise above 35°C/higher temperatures the stomatal pores close (and so slow transpiration). e Calculate standard error or calculate the distance of each reading from the mean for that temperature and calculate the percentage distance. If greater than 10%, the result may be considered to be anomalous. 8 Calculate the cross-section of the capillary: πr2 = 3.142 × 0.6 × 0.6 = 1.131 Multiply by the distance moved in 30 s = 25.0, so 1.131 × 25 = 28.278 Multiply by 2 for water uptake per minute = 56.6 mm 3 min–1 Adaptations of plants to the availability of water 1 A waxy cuticle over the leaves and stem; stomata restricted to the lower surface of the leaves to reduce diffusion; stomata close at night when carbon dioxide uptake is not needed; overlapping leaf canopy further reduces diffusion. 2 Any four from: reduction in stomatal number; stomatal pores protected to reduce the diffusion gradient and so water loss, e.g. sunk in pits; in grooves; surrounded by hairs or leaf rolled up with stomata on the inside; leaves reduced in size to small needles or spines so the surface area of the leaf is reduced; deep, wide roots to increase water uptake. 3 Any four from: stomata on upper surface; large air spaces; thin, flat leaves or feathery leaves for buoyancy; thin waxy cuticle; reduced veins in leaves; reduced root system. Translocation 1 The meristems or growing points in roots, stems and leaves; storage organs; buds of flowers. 2 It has not been proven or disproven by experimentation. 3 a Active transport into phloem; ATP supplied by companion cells; passive movement through the cytoplasm and plasmodesmata. b Actively pumped out of the phloem at the sink; (as a result) decrease in water potential in the phloem; water leaves the phloem by osmosis (some enters the xylem); creates a reduction in pressure in phloem; pressure gradient from source (high pressure) to sink (low pressure). © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 15 4 Transport in phloem — radioactive tracers and ringing experiments support this. Mass flow — supported by modelling experiments/not supported so far in living plants. Loading and unloading — supported by the use of ATP and active transport, and mitochondria in companion cells and living phloem tubes; metabolic poisons halt translocation. Source to sink movement — pressure gradient high at source and low at sink supported by pressure evidence when the phloem is cut as the sap leaves faster at source than at the sink. (Award no marks for giving a counter-argument as the question does not ask for this.) Exam-style questions 1 a Cut the end under water and immediately transfer it to the potometer under water. b The water used/retained by the plant can be calculated; the calculated transpiration loss will be more accurate. ci Water loss = 376.8 – 375.8 = 1.0 g per 20 minutes, so 3.0 g per hour. Water uptake = 10.00 – 9.40 = 0.60 cm per 20 minutes, so 1.8 cm per hour. c ii The assumption is that the water loss from the plant is the same as water taken up. However, some water is retained by the plant and some is used by the plant, e.g. for photosynthesis. c iii Both mass and volume of water in the tube are reaching a point of stability, i.e. there is little or no further loss in value for both. c iv The stomatal pores close, which may reduce further water loss and prevent the plant from dying. 2 Active transport/uptake. (Allow facilitated diffusion, but award no credit for osmosis.) Cells have hairs/extensions; thin cell wall; large/increased surface area; many/more mitochondria; (many) carrier proteins/transport proteins/protein pumps in cell-surface membrane. 3 D: thick waxy cuticle; E: waxy layer prevents water loss from that surface. D: leaf curled/folded; E: reduces surface that is exposed; creates high water (vapour) potential (outside stomata); reduces water (vapour) potential gradient. D: hairs; E: reduces evaporation/diffusion through the leaf surface; trap water vapour; creates high water (vapour) potential (outside stomata); reduces water (vapour) potential gradient. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 16 Module 4 Biodiversity, evolution and disease Topic 4 Communicable diseases, disease prevention and the immune system Pathogens 1 They prevent harmful organisms growing on the body; some may assist in the digestion of complex foods; some produce vitamins that we do not obtain from our food. 2 It lives on or in the host body and obtains all of its needs, such as energy, nutrients, moisture and protection, without any benefit to the host; some cause harm to the host. 3 A communicable disease is any disease caused by a pathogen. A non-communicable disease is a disease not caused by a pathogen but it may be caused by genetic or environmental factors, such as diet or pollution. 4 Any three from: transmission through water; contaminated food; airborne pathogens; droplet infection; direct skin contact; use of a vector such as the mosquito. 5 Failure to vaccinate in many countries, owing to misunderstanding/fear of the process. Overuse of antibiotics/poor use of antibiotics forming resistant strains; mutations; reduction in inoculations because of religious or other reasons. 6 It is an intercellular bacteria — it infects the space between the cells, especially in the meninges of the brain. 7 They feed on the dead and decaying tissue before re-infecting new hosts. 8 They infect cells and then use the host cell replication procedures to make more viruses; they do not need to carry out any functions normally associated with living cells because the host cell carries it all out for them, including reproduction. 9 Similarities: they both consist of a viral protein forming a coat (capsid) around a central RNA core; surrounded by a phospholipid bilayer formed from the cell-surface membrane of the host cell; glycoproteins in the bilayer allow them to re-infect new host cells. Difference: HIV is a retrovirus with an enzyme (reverse transcriptase) that copies the viral RNA into host DNA so it becomes a permanent part of the host cell DNA (a provirus). Allow 2 marks for similarities; 1 mark for a difference. 10 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 17 a Plasmodium species. b There are a number of different Plasmodium species that infect humans. Plasmodium falciparum is the most dangerous as it may cause death. The method of infection is by a vector (the female mosquito), where the parasite lives part of its life cycle and reproduces before infecting a new human host. 11 Cell walls of chitin, not cellulose; oil is the food storage material, not starch; the body is made up of long thin threads (or filaments) called hyphae; often with multiple nuclei per cell; reproductive structures are spores. 12 The immune system of animals often prevents fungal attack; the microbiome (bacterial organisms naturally growing on or in animal cells) makes the host inhospitable to fungi. 13 Plant: potato or tomato blight (Phytophthora infestans); black sigatoka in bananas (Mycosphaerella fijiensis). Animal: ringworm (Trichophyton verrucosum); athlete’s foot (Trichophyton rubrum); infections of the mouth and reproductive tracts (Candida albicans). 14 It has cell walls of cellulose, not chitin, and stores starch. Both of these are plant characteristics, although it also has fungal hyphae and spores. 15 Pathogen Bacterial Viral Disease Transmission Animal TB — Mycobacterium tuberculosis and M. bovis Droplets in the air Plant Ring rot — Clavibacter michiganensis subsp. sependonicus Contact with infected plant material Animal Influenza — influenza A, B or C (from family Orthomyxoviridae) Droplets in the air Plant Tobacco mosaic virus — TMV Contact with infected plant material or indirectly through aphids carrying the virus from one plant to another Peach blight and potato leaf roll Indirect transfer through aphids such as Myzus persicae Malaria — Plasmodium species (e.g. P. falciparum) Indirect transfer via the female Anopheles mosquito species Animal Ringworm — Trichophyton verrucosum or athlete’s foot — Trichophyton rubrum Contact such as via towels/footwear Plant Black sigatoka — Mycosphaerella fijiensis Spores dispersed through the air Potato blight — Phytophthora infestans Spores dispersed through the air; swimming spores in water film Protoctistan Fungal Fungal-like 16 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 18 a From one host to another, so it needs contact or droplets spread from one host to the next. b Via an intermediary or secondary host, such as a vector that transmits the pathogen in its own body. Frequently some of the life cycle of the pathogen occurs in this secondary host. 17 A disease that could not normally survive in a host, but it takes advantage of a weakened host. This is typical of the symptoms of AIDS that occur once HIV begins to attack the host’s lymphocytes. 18 Any three from: check the procedure to ensure no contamination; repeat using all four TB drugs together to test the development of resistant strains; repeat using other combinations of the four drugs; repeat all stages of the investigations at least three times to ensure the conclusions are reliable and valid; carry out statistical tests to check the results are valid. Factors affecting transmission 1 Resistance is an inherited condition that confers protection against catching a specific disease. Immunity is where an initial encounter of the disease-causing organism results in the development of future protection because the immune system develops the necessary antibodies to help fight the disease so a subsequent encounter will not result in any symptoms. 2 Type of transmission Type of disease Factors that affect transmission Direct Influenza Proximity of hosts, so spread is more rapid in schools and hospitals or poor housing TMV in plants Monoculture farming methods Indirect Transmission by vectors Climate and weather; a breeding ground such as stagnant water Human diseases H1N1 influenza strain or SARS Increased travel Cholera, typhoid or polio Contaminated water supply such as in poor areas; poor sanitation; poor hygiene and untreated sewage Smallpox Travel to areas with no resistance and no immunity HIV Human behaviour can increase the risk of spread © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 19 Plant defences 1 They all prevent the infection entering the plant. 2 Any three from: secretion of chemicals that encourage microbes that compete with the pathogen secretion of chemicals that are toxic to pathogen secretion of inhibitors of enzymes that pathogens rely on to gain entry to the plant cells, such as cellulose enzymes assist pathogen by breaking down the cell wall and inhibitors disrupt this process production of resin that prevents the spread of pathogens 3 Any one from: production of calluses around the pathogen-infected site cell death around the pathogen tyloses in the vascular tissue block the vessels and prevent the spread of pathogens cell signalling stimulates the production of defence chemicals such as phytoalexins that disrupt the pathogen either by affecting its reproduction or its metabolism or by disrupting its cell-surface membrane salicylic acid travels to other parts of the plant, giving them protection against infection ethylene stimulates other parts of the same plant when under attack 4 A long-term response to pathogens and infections caused by cell-signalling molecules. The primary non-specific defences in animals 1 Category of defence mechanism Method Example Cellular Cells signal the body about an invasion of pathogens; produce substances that protect; ingest pathogens Secretion of cytokines, interleukins and histamines; goblet cells throughout the gut and airways produce a sticky mucus of glycoproteins to trap bacteria and particles © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 20 Category of defence mechanism Method Example Chemical The body secretes substances that change the environment to become hostile to the pathogen; causes pathogens to burst; stops pathogens reproducing or growing; prevents entry into the cells The enzyme lysozyme is an antibacterial agent that is produced in tears; fatty acids in sebum have antibacterial properties; hydrochloric acid produced by the stomach lining destroys bacteria; histamines; cytokines Physical Tissues act as a barrier Skin and mucus membranes of the gut; the gas exchange system; reproductive system Microbiome (our own bacterial flora living on and within us) Compete with pathogens and prevent them developing and growing Bacteria in the reproductive tract prevent growth and development of the fungus Candida albicans; E. coli in the gut compete successfully with pathogens and prevent them developing 2 a Barrier: keratin in the outer layer is a tough dead layer that prevents entry. Chemical: secretions such as sebum make the skin acidic; sweat evaporates and leaves salts and little moisture; all prevent growth of microbes. b A sudden expulsion of air (a sneeze or cough) that removes pathogens from the airways, caused by irritation of airway’s lining; it also increases the spread of pathogen. 3 The gut flora (part of the microbiome) is also destroyed and so other infections may develop, such as Candida albicans. 4 a Blood clotting — seals the wound to stop blood loss and prevents entry of pathogens. Inflammation — vasodilation increases blood flow to the site, leaky capillaries allow fluid into the tissues, phagocytes leave the blood for the affected tissue to attack pathogens Cytokines — promote inflammation, release phase proteins that attach to pathogens to encourage attack by phagocytes and signal to the rest of the body. Wound repair — respond to growth factors from platelets, stem cells divide and form new tissue, wound contraction. Phagocytes — engulf pathogens and foreign proteins, neutrophils engulf and destroy bacteria, monocytes form macrophages in the tissues (such as liver, lungs, © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 21 kidney, brain, spleen and lymph nodes) and are long-lasting, also present foreign antigens on their surface, dendritic cells interact with the pathogens and lymphocytes. b It responds in the same way whatever the type of pathogen; it is very rapid but not completely effective. 5 A specific defence response to a particular pathogen involving lymphocytes producing antibodies that recognise different pathogens by their antigens. The primary and secondary immune responses 1 B lymphocytes originate in the bone marrow and differentiate there; they become plasma cells and are found in the plasma and in the lymphatic system; they produce antibodies and memory cells. T lymphocytes originate in the bone marrow but move to the thymus to mature and differentiate; they do not make antibodies but work in a number of other ways; they secrete chemicals such as cytokines and interleukins that stimulate mitotic divisions, stimulating B lymphocytes and coordinating the response. 2 3 Similarities: both have receptor proteins on the surface of the cells; the first stage is antigen presentation; occurs on macrophages and stimulates the cell response in both; © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 22 clonal selection and expansion by mitosis occur in both; cytokines produced and coordinated. Differences: macrophage releases cytokine, interleukin 1 (IL-1) to stimulate T helper cells to divide; B cells ‘display’ to T helper cells to activate those correct ones with complementary fit; T helper cells release the cytokine, interleukin 2 (IL-2); IL-2 stimulates B cells to divide and differentiate into plasma cells and also memory cells; B plasma cells produce antibodies by protein synthesis; IL-2 coordinates the activity of the other aspects of the immune response including lymphocytes and macrophages; it stimulates T helper cells to produce another cytokine, interferon (IFN), to stimulate macrophage activity; T cells produce a number of different types of T cells at the start of the immune response; B cells respond by specific antibody production; T cells respond by T helper cells producing cytokines to coordinate the immune response and by T killer cells that attack and destroy infected cells (e.g. a cell infected with a virus); T regulator cells shut down the immune response and prevent uninfected cells from being attacked. Award a maximum of 2 marks for similarities and 4 marks for differences. 4 a The memory cells remain present in the blood and lymph and are activated as soon as the same antigen is detected; they produce complementary plasma cells without the need for clonal selection and activation; as more clones are already present. b The response is faster and the number of plasma cells and antibodies are very much greater in the secondary response; there are no symptoms or evidence of the disease in the individual because the pathogen is destroyed more quickly. a Primary response: 18 days; secondary response: 6 days. b Primary response: 2.5 au; secondary response: 7 au. 5 Antibodies 1 Antibodies are formed of more than two polypeptide chains held into a Y shape by disulfide bonds (which are strong bonds). 2 a This is the same for all antibodies of a particular type; it binds to the receptors on phagocyte surfaces. b This is the antigen-binding site — each antibody variable region has a different antigen-binding site; it binds to specific antigens of a pathogen or foreign protein that carry the complementary shape; this region is different for each type of antigen/complementary to a specific antigen. 3 Antitoxins: make toxins produced by pathogens harmless by combining with them. Agglutinins: bind two antigens from different pathogens together making them clump. Opsonins: coat pathogens to mark them for destruction by phagocytes. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 23 Types of immunity 1 Type of immunity Active Passive Natural Immunity following an infection Immunity conferred by antibodies from an immune individual crossing to a non-immune individual e.g. chicken pox virus e.g. crossing the placenta during pregnancy and in the mother’s milk during breast-feeding Immunity following a vaccination containing disease antigens Immunity following an injection of antibodies from another source to give immediate immunity e.g. mumps or whooping cough e.g. tetanus, rabies or diphtheria Artificial 2 Day 3 = 90 au; day 7 = 50 au. Autoimmune diseases 1 a Where the immune response attacks the body’s own cells, often against one organ but it may be against the whole body such as in Crohn’s disease, lupus or rheumatoid arthritis. b The immune system attacks self-antigens using mostly T helper cells and T killer cells. It may be the result of a genetic predisposition caused by an inherited gene, but environmental issues also play a part. Immunisation and vaccination 1 Vaccination is the active process of immunising people using live, attenuated or killed pathogens. Immunisation is artificial active immunity by the use of vaccination and artificial passive immunity. 2 a Vulnerable adults such as those with a chronic illness (weakened immune systems), pregnant women (the fetus has not developed an immune system) or health workers (increased risk as close contact with sufferers). © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 24 b The individuals are especially susceptible and as the virus mutates frequently, it forms new strains at regular intervals and it would be difficult to keep everyone in the population fully vaccinated. 3 Ring: vaccination of those around or living near infected individuals — limits but does not stop the spread of the disease. Herd: vaccination of as many individuals as possible in a population — 95–100% needed and the disease and its spread are stopped. 4 Organism Problem for vaccine development Plasmodium A eukaryotic organism that produces many antigens on its surface and different ones at different stages in development Viruses Viruses infect the cells and take over the host cell replication mechanism; antigens are ‘hidden’ or different strains cross breed to form new ones Mutated viruses Antigenic drift — small changes in the antigens; antigenic shift — large changes in the antigens for the same virus strain New diseases No effective drugs have yet been developed Possible sources of medicines 1 Compounds produced by fungi and actinobacteria and other plants and animals; possible genes that may produce suitable drugs; develop molecules that will fit into receptor proteins on membranes such as those for hormones or neurotransmitters; modification of existing drugs; traditional plant remedies that offer potential medicines; personalising medicines for the individual; synthesising medicine using produced genomes that can suit an individual or a small group of people. Antibiotics 1 They are ‘anti-biotic’ (i.e. anti-bacterial) and work by damaging the bacterial cell walls, by inhibiting bacterial enzymes or by preventing bacterial reproduction; none of these are effective against other organisms such as viruses or protoctistans. 2 Mutations leading to antibiotic-resistant strains; prescription misuse of antibiotics for viral infections; patient misuse by halting treatment too early; overuse of antibiotics; use of antibiotics in farming. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 25 Exam-style questions 1 a Short term: group 2 had an immediate benefit, since the antibody concentration immediately rose to 23 au on injection. In group 1 it took 10 days to reach an antibody concentration of 24 au. b Long term: group 1 had longer-term benefits, since the antibody concentration took 8- days to fall to 3 au, whereas in group 2 the antibody concentration fell to 2 au within 15 days. The antibody concentration in group 2 fell quickly to the level at 15 days, whereas in group 1 there was a slower, steadier fall over 80 days. 2 Type of nonspecific defence Action Blood-clotting Rapid response; platelets release a compound; chain reaction or cascade; large number of plasma proteins; fibrin produced; traps blood cells; clot forms Inflammation Histamines secreted; site of infection inflamed by interleukins promoting inflammation; increase in blood flow due to vasodilation; leaky capillaries allow fluid to leave the capillary for tissues; allow plasma proteins to leave; secretion of cytokines that stimulate and signal to whole body Wound repair Stem cells at the site divide and begin repair; platelets secrete growth factors; new blood vessels; collagen produced; formation of new tissue; contractile cells contract wound and close it up; destruction of unwanted cells Phagocytes Neutrophils spread rapidly to the site and destroy pathogens, but then die and form pus; monocytes enter tissues and form macrophages; these are important in the specific response; dendritic cells have a large surface area to interact and trap pathogens; take them to lymph nodes 3 a Transmission is by droplet infection, so coughing and sneezing of an infected person spreads the infection in the air, which is then inhaled by another person. b In 1920 it was 78 000 and in 2005 it was 5000 individuals, so the difference is 73 000. c There was a steady drop from about 1915 of 90 000 cases to 50 000 cases in 1950, with an increase in about 1925 and again in 1940. From 1950 to 1968 the fall was very steep (50 000 to about 14 000) and from 1968 to 1990 the fall slowed to 5000 where it remained at almost a plateau with just a very slight rise at 2005. Allow 1 mark for correct data quotations (two sets, i.e. year and number of cases ×2). © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 26 4 a b Polypeptide chains that are held together by disulfide bonds. 5 Introduction of attenuated or killed pathogen; carries the antigen; activates the patient’s immune response; build-up of antibodies and memory cells. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 27 Topic 5 Biodiversity Levels of biodiversity 1 A group of organisms with observable similarities that can interbreed to produce fertile offspring. 2 The variety of different species found in a particular place. 3 Species richness is the number of different species present. Species evenness is the abundance of organisms/number of different organisms within a species. 4 The unique combination of genes in different individuals and the different forms of those genes present (alleles). 5 All the alleles of all the genes within a species. 6 Separation of different allozymes within an individual; sequencing the DNA: studying the nucleotide sequences of the allozymes; allowing comparisons between individuals after sequencing. 7 Assessment What this means Method Proportion of gene loci with two or more alleles The proportion showing polymorphism Determine the genotypes in a sample of the population and calculate the % of alleles Proportion of heterozygotes in population Those with different alleles for a feature, e.g. Hh Cross-breeding or interbreeding (not inbreeding) The number of different alleles for a gene Polyallelic or allele richness Determine differences in protein structure, e.g. blood proteins in dogs show the number of alleles varies between 2 and 11 8 a P = 9/39 = 0.23 b 95% 9 The number of different habitats available and for different species; may be determined by assessing the number of niches — the more niches present in a habitat, the greater the habitat diversity. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 28 Sampling 1 Random sampling using quadrats. 2 Sampling plants across zones; to demonstrate zonation. 3 Two from: pooters; sweep nets; pond nets; pitfall traps; beating trays. Simpson’s Index of Diversity 1 a Species Total number of each species (n) n/N (n/N)2 Dandelion 27 0.69 0.4761 Clover 7 0.18 0.0324 Trefoil 1 0.02 0.0004 Plantain 1 0.02 0.0004 Groundsel 3 0.07 0.0049 Total N = 39 ∑(n/N)2 = 0.5142 Award 1 mark for N = 39, 1 mark for all n/N2 values calculated correctly and 1 mark for a value of ∑(n/N)2 = 0.5142 or 0.51.) b D = 1 – 0.5142 = 0.4858 (or 0.49) c When the index is close to 0, there is low diversity. When the index is close to 1, there is high diversity. A value of 0.49 is a 49% probability of different species, so it is close to the average. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 29 Factors affecting biodiversity 1 Factors affecting biodiversity Causes Effects Loss of habitats: Deforestation Clearing for: industry or housing Destruction of coral reefs Farming, fishing and leisure Destruction of the sea bed Dragnets scrape the sea bed Exploitation Removal of timber for industry or furniture; overfishing so fish stock falls Reduction in the number of species and loss of habitat Over-hunting Removal of wild animals as ‘bush meat’ Species at risk of extinction Agriculture Monoculture of one type of crop or livestock Reduction in the number of a particular species Pollution from agriculture Waste products; use of fertilisers and pesticides Loss of biodiversity as some species thrive with additional fertilisers and others are destroyed; runoff pollutes streams and pond water Climate change Modification of weather patterns such as drought and floods affects species distribution Distribution of species changes; lack of food for some species causes decline Loss of species and loss of resources to rebuild number of species; loss of habitat Maintaining biodiversity 1 Biological: imbalance in natural communities; high diversity gives greater stability; ability to withstand environmental changes; importance of keystone species; loss of top predators; loss of control of the rest of food chain/web. Economic: provision of ecosystem services such as oxygen input/carbon dioxide uptake; water vapour; soil fertility; protection from erosion; reduce impact of flooding; insect pollinators, e.g. bees; provide natural materials for drugs; for enzymes used in biotechnology, e.g. DNA polymerase; house-building/furniture/flooring. Maximum 2 marks each for biological and economic. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 30 2 Any three from: control of land management; conserve species/re-establish species; restore damaged ecosystems; create new/re-establish old habitats; maintain habitats by controlling invading species (e.g. Himalayan honeysuckle). 3 Any two from: botanic gardens; seed banks; zoos; protected game reserves. Exam-style questions 1 a The number of different species present (in a habitat). b Idea of random/unbiased sampling; repeated many times; mean calculated; sampling at different times of the year; method suggested for sampling, e.g. random quadrats and a grid set-up/random pinframes using grid set-up/line transect described and selected line justified. c It measures abundance/numbers in each species; is more quantitative then species richness; a higher species evenness indicates higher biodiversity (or the counterargument); can calculate Simpson’s Index of Diversity. d Student A on site A gained a higher value, which shows greater diversity than at site B (or the higher value shows a greater number of species present than at site B). a Nymphaea. b Natural habitat lost/destroyed/damaged; number of species in population is (too) low; (sexual) reproduction in the wild is difficult with low numbers; the ability to maintain the gene pool ex situ; protection against competition/grazers/pathogens/disease. c Any two from: collected without damage to the ecosystem; stored in little space; cheaper to store/transport; viable for longer than adult plants; the ability to store greater genetic/allelic diversity; protection against pollination by undesired strains/against diseases. d Random sampling; set up a grid using measuring tapes at right angles; quadrat coordinates random; use a key (identification); method to determine abundance, e.g. ACFOR; sampling repeated many times; repeated throughout the year/at different times of the year. (Or an answer that describes the use of a transect.) a Catch in 1968 = 3 900 000 2 3 Catch in 1970 = 3 100 000 Difference = 800 000, so rate = 800 000/2 = 400 000 tonnes per year Catch in 1997 = 1 400 000 Catch in 1998 – 1 200 000 Difference = 200 000 tonnes per year © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 31 Rate of decline is slower in 1998. b This indicates a decline in fish stocks and a decline in other species within the related food web; biodiversity must be lower. c Fish stocks are slowly improving due to a reduction in fishing and better control on fishing of young fish/there is an increase in line-caught fish popular in restaurants and fish counters, so less damage is caused by dragnets. There is no change in the basic level of fish stocks but simply a natural fluctuation in numbers; the rise is no larger than previous increases seen over the past 60 years. The increase is due to an increase in fishing as some controls are relaxed. 4 a Any two from: hair; skin/tissue samples; blood; elephant dung; saliva; urine; bone; sexual fluids. b Little mixing of populations; geographically isolated; family groups stay together; little migration. c The Convention on International Trade in Endangered Species. d Any three from: ban on the sale of ivory; international markets fall so price falls/below level of desired price; allows populations to recover; ban on hunting; education/increase awareness; economic advantage to host country as it attracts funds; (increased) cooperation between countries. a Fertilisers promote growth of a few species only; others are out-competed; disrupted food chains; reduction in soil humus/quality so plants cannot grow. b Loss of genetic diversity/variation; changes in environment/agricultural needs; lost alleles/genes that would have been useful; fewer pollinators; loss of predators. c Runoff/rainfall; affects rivers and streams; riverside species affected; flooding spreads fertilisers further on to low-lying land. 5 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 32 Topic 6 Classification and evolution The biological classification of species 1 Domain, kingdom, phylum, class, order, family, genus, species. Allow the reverse order, but not an incorrect order. 2 Mammalia. 3 Eukaryota, Animalia, Chordata, Mammalia, Artiodactyla, Giraffidae, Giraffa, G. jumae. The species name can be underlined (instead of being italicised). The word ‘jumae’ must have a lower-case j. The binomial system 1 a Mimus b Mimus macdonaldi or M. macdonaldi. The genus is always given a capital letter and the species a lower case letter to differentiate between the two. The five kingdoms 1 Prokaryotes, Protoctista; Fungi; Plantae; Animalia. All organisms (except viruses) are grouped into five separate large groups on the basis of some distinctive shared characteristics. 2 Features Kingdoms Prokaryotae Protoctista Fungi Plantae Animalia Body type Mostly unicellular Unicellular and multicellular Mycelium of hyphae (except yeasts) Multicellular Multicellular and compact Nucleus Absent Present Present Present Present Cell walls Wall of peptidoglycan Wall present in some Wall of chitin Wall of cellulose Absent © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 33 Features Kingdoms Prokaryotae Protoctista Fungi Plantae Animalia Cell vacuoles Only in a few Some (e.g. algae): large, permanent vacuole. Protozoans: small, temporary vacuole Large permanent vacuoles Large permanent vacuoles Small temporary vacuoles Organelles Absent Present Present Present Present Motility Some have flagella Some have undulipodia or cilia Absent Some gametes have undulipodia Muscular system Nervous coordination Absent Absent Absent Absent Present Examples (give two of each group) Bacteria, cyanobacteria Algae, amoeba, slime moulds Yeast, mould fungi Liverworts and mosses, ferns, conifers and flowering plants Coral, worms, insects, molluscs, echinoderms, vertebrates 3 a Prokaryotae: single-celled or filaments of single cells or colonies of single cells; smaller than eukaryotes; no linear chromosomes; divide by binary fission; no nuclear membrane; no membrane-bound organelles. b Protoctista: diverse group; all are eukaryotes; true nucleus with nuclear membrane; membrane-bound organelles. c Fungi: all are heterotrophic; feed on dead, decaying matter; mycelium of threads called hyphae; cell wall of chitin; store oil and may be multinucleated; reproduce by spores; may be sexual or asexual, except yeasts, which reproduce by budding. d Plantae: multicellular; photosynthetic; complex bodies; frequently highly branched; some specialised cells; immobile; usually reproduce sexually; cellulose cell wall; mostly store starch. e Animalia: multicellular; heterotrophic nutrition, although some have a symbiotic relationship with an autotrophic organism; complex and compact bodies; possess a nervous system; no cell walls. © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 34 New classification systems 1 Three domains: bacteria/eubacteria, archea/archebacteria and eukaryotes/eukarya Five kingdoms: prokaryotae/prokaryotes, protoctista, fungi, plantae/plants and animalia/animals. In the kingdom-based system, eukaryotes are subdivided into different kingdoms/eukaryotes are all in same domain; prokaryotes are all in same kingdom/prokaryotes are split into different domains; domain classification based on rRNA/ribosomes/RNA polymerase/protein synthesis/enzymes/membrane structure/flagella. 2 a Antibodies: using antibodies to detect similarities and differences between complex molecules and compounds; relies on the specific shape of the variable region of antibodies. b Protein sequencing: sequencing amino acids in a protein; identifying similarities and differences in proteins of different species; by comparing the primary structure of the proteins (e.g. cytochrome C on the mitochondrial membrane); usually uses the one letter code for amino acids to read the sequence; also uses the R groups of different proteins. c DNA hybridisation: identification of DNA similarities between species; DNA is cut into small pieces and the H bonds between each half of each section by high temperatures (of 90°C); mixing the strands with similar treated DNA of other species; bonding between the DNA half strands of different species occurs; differences occur as the DNA match is not correct; imperfect matches have weaker H bonds; small amounts of heat separate these whereas much more heat is required to separate perfect matches. d DNA sequencing: sequencing DNA bases is easier than sequencing the amino acids of a protein due to the degenerate nature of the DNA code; allows significant differences between codes to be identified; allows mutations to be identified; much more accurate differences to be seen. Classification and phylogeny 1 The evolutionary history of a specific taxon; a group of organisms at any level or rank in the hierarchical classification system, for example a named species or any group such as plants or mammals. Evidence for the theory of evolution 1 Any three from: collect resources (such as food, water, a space to live); survive predation; survive diseases; mate and produce offspring (to pass on their genes). 2 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 35 a Morphology: similarities of the external form of organisms, e.g. birds have feathers, wings and a beak. b Anatomy: a comparative study of the limbs in all tetrapods (amphibians, reptiles, birds and mammals) shows striking similarities. c Fossils: mineralised remains of an organism or faeces or other evidence. The Rift valley in Africa has a wealth of fossils that can be dated according to the rock layer they are found in/carbon dating/argon dating. d Biochemistry: similarities in proteins and amino acids; the similarity of the genetic code: DNA; ATP is the universal energy currency; similarities in enzymes, e.g. DNA polymerase; comparative studies of DNA and proteins show remarkable similarities in closely related forms. e Classification: the study of classification and phylogeny. Variation 1 Genetic variation is the variation in the genotype within a species. Phenotypic variation is the differences that are detectable within a species, e.g. the external appearance or the biochemistry of organisms within the species. 2 Interspecific variation is the differences between the species. Intraspecific variation is the differences within the same species. 3 Type of variation Continuous Discontinuous Discrete categories No Yes Intermediates Yes No Continuous with no categories Yes — a range of values/measurements No Type of data Quantitative Qualitative Genes controlled by Many genes with two or more alleles One or two genes, each with only two or a few alleles Environmental effect Large effect Little or no effect Examples Height of animals, plant leaf width, coat colour Human blood groups © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 36 4 a Holly leaf type Replicates of spine numbers Mean number of spines Ilex aquifolium 12 14 9 11.66 Ilex verticillata 3 2 4 3 b Errors: there is an incorrect number of decimal places for Ilex aquifolium as the data are in whole numbers, but the mean is recorded to 2 decimal places. It should be to the same number of decimal places or one more decimal place for any calculated data — one value recorded to 2 decimal places and the other to a whole number. c Validity of conclusion: It is valid because it is based on 50 leaves and replicated three times; not valid because it is a small sample size/no statistical test has been carried out on the data; the environmental effect has not been considered; any suitable named environmental effect. The implications of evolution for humans 1 Antibiotic drug resistance over time is as a result of use of overuse/misuse of antibiotics; change in the genes/mutation in the genes. Pesticide resistance over time is as a result of overuse/misuse. Both are selective agents; both types of resistance result from mutations; both are adaptations to a hostile environment; pesticides are manufactured chemicals/antibiotics were originally naturally produced by organisms such as fungi. Exam-style questions 1 a It assists in deciding which group/taxon/organisms or species (or named example) belong to; compare DNA/genes/sequence of bases/proportion of different bases; the idea that the more similar the DNA/genes, the closer the relationship. b Fossils/fossil records; anatomy; physiology; behaviour; embryology. a On mitochondrial membranes or thylakoids in green plants. b Between cartilaginous and bony fish; between birds and reptiles. 2 © Jenny Wakefield-Warren 2015 Philip Allan for Hodder Education 37