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AP Biology Free Response Question Rubrics Essay #3 1. Carbon is a very important element in living systems. a. Describe the various characteristics of the carbon atom that makes possible the building of a variety of biological molecules. b. The following structures are examples of different categories of biological compounds. Describe how each category of compounds is important to the structure and function of living systems. STANDARDS: A. CHARACTERISTICS OF CARBON ATOMS: (Max of 4 points) __Ready availability, abundance __Atom small in size, outer (valence) electrons close to nucleus, so forms stable (strong) bonds __4 electrons in a valence-capacity of 8, forms 4 bonds to 4 other atoms __Forms covalent bonds __Can bond to other carbon atoms, no upper limit to size of carbon compounds __Bond angles form tetrahedron, resulting in 3-D structures, chains, rings, not just planar __Can form multiple C-C, C=C, C=C bonds __Can form isomers, different structures - same number and kind of atoms __Functional groups/combine with a variety of other elements __BONUS POINT: if get 3 above - Uniqueness, only Carbon has all of these characteristics B. BIOLOGICAL MOLECULES: (Max of 5 points) (Cannot get 10 points for this question without mentioning both category I and II) CATEGORY I: __Identification of molecule / category: Phospholipid, phosphoglyceride, fat, lipid, phosphatidylethanolamine / polypeptide. __Characteristics of molecule: Hydrophobic/hydrophilic, polar/nonpolar, amphipathic, or non-water soluble, high E bonds, sat/unsat C-C bonds. __Structural uses of molecule: membrane, lipid bilayer, fluid mosaic. __Functions of molecule (for example): (2 Max) Phospholipids: Regulation of membrane permeability, fluidity Fats: Structural, insulation, energy storage, water-proofing Steroids/Sterols: Hormonal, membrane fluidity Cholesterol: Animal membranes Fat soluble Vitamins: Coenzymes Prostaglandins: Neural modulators Waxes: Water-proofing CATEGORY II: __Identification of molecule / category: Amino acid / protein / cysteine __Recognizing cysteine's role in disulfide bond formation __Characteristics of molecule: Side chains variable Peptide bonds may be formed Subunit (monomer, building block) of protein Levels of protein structure / zwitterion / as buffers __Structural roles: __Functional roles: (2 Max) Keratin, collagen, cytoskeletal (tubulin, actin), etc. Enzymatic - speed reactions (pepsin, glucose oxidase, etc.) Transport (Hb, Myb, permeases, HDL/LDL) Regulatory (oligopeptides, ex. hypothalamic releasing factors, insulin, glucagon, etc.) Contractile - actin, myosin Protection - antibodies Essay # 2. The unique properties (characteristics) of water make life possible on Earth. In 3 paragraphs, select three properties of water and: a. for each property, identify and define the property and explain it in terms of the physical/chemical nature of water. b. for each property, describe one example of how the property affects the functioning of living organisms. Water FRQ (1996) Rubric Identification (1pt) Definition (1pt) Elaboration (1pt) Example (1pt_) POLARITY Unequal charge distribution Electronegativity, Hd+, Od-, unequal sharing Various Hydrogen Bonding Weak, intermolecular, transient, electrostatic attraction Attraction between Hd+ and Od- Various Cohesion Attraction of water molecules to each other H-bonding explained Transpiration, surface tension, e.g., water striders Surface tension Resistance to being stretched H-binding explained Water walking, water held by soil particles Adhesion Attraction of water molecules for other molecules H-bonding explained Capillarity, transpiration High Specific Heat Absorbs 1 cal/g/oC Water absorbs heat; heat buffering; many H-bonds; high boiling point Moderates temperature effects on organisms (circadian/seasonal) and environmental temperature High Heat of Vaporization Energy req’d for liquid gas; 540 cal/g/oC Breaking H-bonds; good coolant; high boiling point Sweating; evaporation from body surface results in cooling; water cycles/rain; transpiration Versatile solvent Dissolves many compounds Dissolves by ionization/ionization shells, e.g., salts, minerals, gases Any valid biological example; spheres of hydration, bioorganics, etc; acid rain effects; hydrophobic/hydrophilic Essay #1.Chemical bonds are essential to building the molecules of life. a. In 3 paragraphs, describe the following bond types and how they are significant to life on earth: ionic, covalent (polar and non-polar), hydrogen, and Van der Wahls (interactions). b. How is energy transferred between these bonds and what role does oxygen play in the formation and breaking of bonds? Rubric Identification (1pt) Ionic Definition (1pt) Bonding between cation and anion, This inequality is brought to an extreme in a bonding arrangement called an ionic bond. Elaboration (1pt) In an ionic bond, one atom pulls the shared electrons away from the other atom entirely. Ionic bonds are stronger than polar bonds. Covalent P&NP Bonds formed through the more or less equal sharing of electrons between atoms are known as covalent bonds. Hydrogen a weak bond between two molecules resulting from an electrostatic attraction between a proton in one molecule and an electronegative atom in the other. If the electrons in a covalent bond are shared equally, the resulting bond is called a nonpolar covalent bond. When one atom pulls the shared electrons toward itself a little more tightly than the other, the resulting covalent bond is said to be a polar bond. In a polar bond, the atom that pulls electrons toward itself gains a slight negative charge (because electrons have a negative charge). Since the other atom partially loses an electron, it gains a slight positive charge. A hydrogen bond is a dipole dipole interaction that occurs between any molecule with a bond between a hydrogen atom and any of oxygen/fluorine/nitrogen. it is a force of attraction between a hydrogen atom in one molecule and a small atom of high electronegativity in another molecule. That is, it is an intermolecular force, not an Example (1pt_) One example of ionic bonding is the reaction between sodium (Na) and chlorine (Cl) to form table salt (NaCl). The chlorine atom steals an electron from the sodium atom. Because it loses an electron, the sodium atom develops a charge of +1. The chlorine atom has a charge of –1, since it gained an electron. For example, the atoms in water form polar bonds because oxygen, which has eight protons in its nucleus, has a greater pull on electrons than hydrogen, which has only one proton. Hydrogen bonds are responsible for the bonding of water molecules in liquid and solid states, and are weaker than covalent and ionic bonds. Van de Wahls Van der Waals forces include attraction and repulsions between atoms, molecules, and surfaces, as well as other intermolecular forces. They differ from covalent and ionic bonding in that they are caused by correlations in the fluctuating polarizations of nearby particles (a consequence of quantum dynamics[3]). Bond energy Ionic and covalent bonds between elements require energy to break. Ionic bonds are not as strong as covalent, which determines their behavior in biological systems. However, not all bonds are ionic or covalent bonds. Weaker bonds can also form between molecules. Two weak bonds that occur frequently are hydrogen bonds and van der Waals interactions. Weak interactions are the key means by which molecules interact with one another— enzymes with their substrates, hormones with their receptors, antibodies with their antigens. intramolecular force as in the common use of the word bond. are the residual attractive or repulsive forces between molecules or atomic groups that do not arise from a covalent bond, or electrostatic interaction of ions or of ionic groups with one another or with neutral molecules.[1] The resulting van der Waals forces can be attractive or repulsive. Oxygen is a very electronegative element, which means it attracts electrons as is seen in water. So It is kind of a vacuum for electrons, which result in bonds breaking. Gekko lizard and wall of aquarium The strength and specificity of weak interactions are highly dependent on the medium in which they take place, and the majority of biological interactions take place in water. Two properties of water are especially important biologically: