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Cardiomyopathy Genetic Testing A Comprehensive Guide A cardiomyopathy is defined as a disease of the heart muscle, and can be characterized by the muscle becoming enlarged (dilated), thick (hypertrophied), or rigid. These changes to the cardiac muscle cause the heart to work less efficiently because of a reduced ability to pump blood and/or maintain a normal rhythm. Ultimately, cardiomyopathies can lead to heart failure, arrhythmias, and/or sudden death. Cardiomyopathy can develop in patients due to a variety of reasons, including but not limited to: long-term high-blood pressure, coronary artery disease, uncontrolled heart rhythm, infection, metabolic disorders, and/or nutritional deficiencies. However, in some instances individuals are born with a genetic predisposition to develop cardiomyopathy over their lifetime. These heritable forms of cardiomyopathy are generally caused by pathogenic variants in genes that code for proteins that play important roles in the contraction of the heart. Genetic testing can help determine if an individual carries a disease-causing variant in a gene that has been associated with a heritable risk to develop cardiomyopathy, as well as potentially provide valuable information to the patient and their family about future medical management. Clinical Presentation Cardiomyopathy can affect individuals of all ages and ethnicities. They may present at differing ages and with variable symptoms, even among members of the same family. The most serious complications of a cardiomyopathy are heart failure and sudden death. However, more common signs and symptoms of cardiomyopathies may include: • Chest Pain • Fatigue • Cough • Palpitations or arrhythmias • Syncope • Swelling in the ankles and feet • Dyspnea GUIDE FOR CARDIOMYOPATHY 1 CLINICAL INFORMATION Heritable Cardiomyopathies CLINICAL INFORMATION Several different forms of cardiomyopathy conditions have been characterized, each of which can be caused by certain genetic factors. Although each of the conditions affect the cardiac muscle and the heart’s ability to pump blood efficiently, each condition has distinct features, some of which are summarized in Table 1.1-5 Phenotype Description Dilated Cardiomypathy (DCM) DCM is characterized by the enlargement, and often impaired contraction, of one or both ventricles. Hypertrophic Cardiomyopathy (HCM) HCM is characterized by a thickened wall of the left ventricle in the absence of other systemic disease. Restrictive Cardiomyopathy (RCM) RCM is characterized by a rigid cardiac muscle that is unable to relax and fill with blood properly. Arrhythmogenic Right Ventricular Cardiomyopathy (ARVC) ARVC is characterized by the replacement of normal heart cells with fat or fibrotic tissue, predominantly in the right ventricle. The left ventricle may also be affected over time. Left Ventricular Non-Compaction (LVNC) LVNC is characterized by prominent and excessive trabeculations in the left ventricle. Table 1: Description of cardiomyopathy phenotypes. 2 Diagnosis The diagnosis of an inherited cardiomyopathy might be considered in an individual and/or family for a number of reasons, including a combination of personal health history, family health history, and/or cardiac testing. Other known causes of cardiomyopathy, including systemic disease, structural cardiac conditions, and alcohol/drug abuse should be ruled out before considering genetic testing for a cardiomyopathy. Table 2 discusses important evaluations that should be investigated by a physician when considering the diagnosis of a heritable cardiomyopathy. Things to Consider History, Presence of, or Abnormal Results Medical History Co-morbid conditions, nutritional deficiencies, and/or alcohol or drug abuse Family History Information Cardiomyopathy, enlarged heart, heart failure and/ or sudden death Physical Examination Elevated jugular venous pressure, rales, gallop, heart murmur and/or edema Non-Invasive ECG, echocardiogram, and/or cardiac MRI Testing Invasive Testing Blood tests, cardiac catheterization, coronary angiography, electrophysiology study (EPS), implanted cardiac loop recorder, and/or endomyocardial biopsy Table 2: Medical history information to consider before undergoing genetic testing for a possible inherited cardiomyopathy. Information gathered from the evaluations listed in Table 2 can provide valuable insight to determine when genetic testing for a cardiomyopathy would be appropriate. GUIDE FOR CARDIOMYOPATHY 3 Factors Influencing Clinical Presentation Many of the genes associated with heritable cardiomyopathies have been shown to have both reduced penetrance and variable expressivity. In other words, patients found to have pathogenic or likely pathogenic variants may or may not experience any cardiac complications over their lifetime (reduced penetrance), or may exhibit different clinical presentations (variable expressivity). This information can help explain why different patients, even members of the same family that carry the identical genetic variant, may have vastly different clinical symptoms and presentations over their lifetimes. Factors to Consider when Ordering Genetic Testing There are several specific recognizable cardiomyopathy phenotypes and clinical presentations, but there may be overlap between the conditions. Nearly all forms of heritable cardiomyopathies have been associated with more than one gene (genetic heterogeneity), while certain genes have also been associated with more than one specific phenotype (phenotypic heterogeneity). Additionally, in some cases cardiomyopathy may only be one of the many features in a multi-systemic disorder with a complex phenotype. This genetic and phenotypic crossover among heritable cardiomyopathies can make genetic testing challenging in some individuals and families. For this reason, in certain circumstances a more comprehensive panel test could be considered. Normal 4 DCM HCM Cardiomyopathy Panel ALPK3 MURC FKRP* MYLK2 HCN4 MYOZ2 NKX2-5 PDLIM3 Hypertrophic Cardiomyopathy (HCM) CAV3 FHL1 GLA JPH2 Arrhythmogenic Right Ventricular Cardiomyopathy (ARVC) MTTG* MYL2 MYL3 PRKAG2 ACTC1 ACTN2 CSRP3 LAMP2 MTTI* MTTK* MTTQ* MYBPC3 ABCC9 ALMS1 ANKRD1 BAG3 CHRM2 CRYAB DMD JUP PKP2 RYR2 PLN MYH7 TCAP TNNC1 TNNI3 TNNT2 TPM1 TTR VCL DES DSC2 DSG2 DSP LMNA SCN5A TTN MIB1 MTND1* MTND5* MTND6* MTTD* MTTH* MTTL1* MTTL2* DOLK DTNA EMD^ FKTN GATAD1 ILK LAMA4 LDB3 TGFB3 TMEM43 MTTM* MTTS1* MTTS2* MYH6 MYPN NEBL NEXN PRDM16 RBM20 SGCD TAZ^ TMPO TXNRD2 Dilated Cardiomyopathy (DCM) RAF1 BRAF HRAS* KRAS MAP2K1 A2ML1* ACTB* ACTG1* CBL* MAP2K2 NRAS PTPN11 RIT1 SOS1 KAT6B* LZTR1* SHOC2* SOS2* SPRED1* Noonan Syndrome & RASopathies† * Del/Dup analysis not offered ^ Gene level resolution; may not detect exon level events † When the Noonan Syndrome and Rasopathies Panel is ordered as a stand-alone test, deletion/duplication analysis is not included for any of the 19 genes. GUIDE FOR CARDIOMYOPATHY 5 6 Identification of Patients at Risk for Heritable Cardiomyopathies1-8 Patients or families with one or more of the following “red flags” may benefit from genetic testing: • Cardiomyopathy or enlarged heart • ICD/Pacemaker placement at <50 years of age • Heart failure and/or transplant • Exercise intolerance • Unexplained cardiac arrest(s) or sudden death • Unexplained accidents such as downing and single car accidents Summary of Recent Consensus Genetic Testing Guidelines for Cardiomyopathies7,8 Disorder Asymptomatic Individuals with a Clinical Relatives (Familial Diagnosis Mutation Testing) DCM Class IIa Class I DCM (w/ cardiac conduction disease) Class I Class I HCM Class I Class I ARVC Class IIa (For patients meeting the ARVC task force diagnostice criteria) Class I Recommendation Classes Class I: Genetic testing is recommended. Test result impacts diagnosis and/or management recommendations. Class IIa: Genetic testing can be useful for patients with a clinical diagnosis. Class IIb:Genetic testing may be considered as part of the diagnostic evaluation. Class III: Genetic testing is not recommended. GUIDE FOR CARDIOMYOPATHY 7 TEST INFORMATION • Unexplained syncope and/or syncope with exercise or emotional distress TEST INFORMATION Cardiomyopathy Testing Options Test Offerings Genes Turn Around Time Cardiomyopathy Panel ABCC9, ACTC1, ACTN2, ALMS1, ALPK3, ANKRD1, BAG3, BRAF, CAV3, CHRM2, CRYAB, CSRP3, DES, DMD, DOLK, DSC2, DSG2, DSP, DTNA, EMD^, FHL1, FKRP*, FKTN, GATAD1, GLA, HCN4, HRAS*, ILK, JPH2, JUP, KRAS, LAMA4, LAMP2, LDB3, LMNA, MAP2K1, MAP2K2, MIB1, MTND1*, MTND5*, MTND6*, MTTD*, MTTG*, MTTH*, MTTI*, MTTK*, MTTL1*, MTTL2*, MTTM*, MTTQ*, MTTS1*, MTTS2*, MURC, MYBPC3, MYH6, MYH7, MYL2, MYL3, MYLK2, MYOZ2, MYPN, NEBL, NEXN, NKX2-5, NRAS, PDLIM3, PKP2, PLN, PRDM16, PRKAG2, PTPN11, RAF1,RBM20, RIT1, RYR2, SCN5A, SGCD, SOS1, TAZ^, TCAP, TGFB3, TMEM43, TMPO, TNNC1, TNNI3, TNNT2, TPM1, TTN, TTR, TXNRD2, VCL 4 weeks Phenotype-Specific Panels 4 weeks HCM ACTC1, ACTN2, CAV3, CSRP3, FHL1, GLA, JPH2, LAMP2, MTTG*, MTTI*, MTTK*, MTTQ*, MYBPC3, MYH7, MYL2, MYL3, PLN, PRKAG2, TCAP, TNNC1, TNNI3, TNNT2, TPM1, TTR, VCL DCM/LVNC ABCC9, ACTC1, ACTN2, ALMS1, ANKRD1, BAG3, CHRM2, CRYAB, CSRP3, DES, DMD, DOLK, DSC2, DSG2, DSP, DTNA, EMD^, FKTN, GATAD1, ILK, LAMA4, LAMP2, LDB3, LMNA, MIB1, MTND1*, MTND5*, MTND6*, MTTD*, MTTH*, MTTI*, MTTK*, MTTL1*, MTTL2*, MTTM*, MTTQ*, MTTS1*, MTTS2*, MYH6, MYH7, MYBPC3, MYPN, NEBL, NEXN, PLN, PRDM16, RAF1, RBM20, SCN5A, SGCD, TAZ^, TCAP, TMPO, TNNC1, TNNI3, TNNT2, TPM1, TTN, TTR, TXNRD2, VCL ARVC DES, DSC2, DSG2, DSP, JUP, LMNA, PKP2, PLN, RYR2, SCN5A, TGFB3, TMEM43, TTN Other Testing Options Combined Panel 4 weeks ABCC9, ACTC1, ACTN2, AKAP9, ALMS1, ALPK3, ANK2, ANKRD1, BAG3, BRAF, CACNA1C, CACNA2D1, CACNB2, CALM1*, CALM2, CALM3, CASQ2, CAV3, CHRM2, CRYAB, CSRP3, DES, DMD, DOLK, DSC2, DSG2, DSP, DTNA, EMD^, FHL1, FKRP*, FKTN, GATAD1, GLA, GPD1L, HCN4, HRAS*, ILK, JPH2, JUP, KCND3, KCNE1, KCNE2, KCNE3, KCNE1L^, KCNH2, KCNJ2, KCNJ5, KCNJ8, KCNQ1, KRAS, LAMA4, LAMP2, LDB3, LMNA, MAP2K1, MAP2K2, MIB1, MTND1*, MTND5*, MTND6*, MTTD*, MTTG*, MTTH*, MTTI*, MTTK*, MTTL1*, MTTL2*, MTTM*, MTTQ*, MTTS1*, MTTS2*, MURC, MYBPC3, MYH6, MYH7, MYL2, MYL3, MYLK2, MYOZ2, MYPN, NEBL, NEXN, NKX2-5, NRAS, PDLIM3, PKP2, PLN, PRDM16, PRKAG2, PTPN11, RAF1, RANGRF, RBM20, RIT1, RYR2, SCN10A, SCN1B^, SCN2B, SCN3B, SCN4B, SCN5A, SGCD, SNTA1, SOS1, TAZ^, TCAP, TGFB3, TMEM43, TMPO, TNNC1, TNNI3, TNNT2, TPM1, TRDN, TRPM4, TTN, TTR, TXNRD2, VCL * Del/Dup analysis not offered ^ Gene level resolution; may not detect exon level events Additional testing options are available, including targeted variant testing for a previously identified variant(s). Appropriate test selection depends on the specific clinical history of a patient, including family and personal health histories as well as familial test results. Testing for most genes includes sequencing and deletion/ duplication analysis via next-generation sequencing and array CGH with exon level resolution, respectively. 8 Sample Submission Genetic testing can be performed on blood, oral rinse, or extracted DNA samples. GeneDx test kits are available to ordering providers, and include sample collection items (such as mouthwash for oral rinse and collection tubes), the necessary sample submission paperwork, and a self-addressed return shipping label. Additionally, all test requisition forms are available for download from the GeneDx website: Cardiology Test Requisition Form www.genedx.com/forms Patient Information Sample Information First name Last name Gender ❒ Male ❒ Female Date of birth (mm/dd/yyyy) ________________ Date of death (if applicable) (mm/dd/yyyy) _______________________________ Ancestry ❒ Caucasian ❒ Eastern European ❒ Central/South American ❒ Western European ❒ Native American ❒ Middle Eastern ❒ Hispanic ❒ African American ❒ Asian ❒ Pacific Islander ❒ Caribbean ❒ Ashkenazi Jewish ❒ Northern European ❒ Other: _________________ Please note that all testing must be performed under the guidance of a health care provider. For more information on the sample submission process, please visit our website: www.genedx.com/supplies or email us at: [email protected] Medical record # City State Zip code Home phone Work phone Email Patient's primary language if not English Date sample obtained (mm/dd/yy) Statement of Medical Necessity This test is medically necessary for the diagnosis or detection of a disease, illness, impairment, symptom, syndrome or disorder. The results will determine my patient's medical management and treatment decisions. The person listed as the Ordering Physician is authorized by law to order the tests(s) requested herein. I confirm that I have provided genetic testing information to the patient and they have consented to genetic testing. Ordering Account Information Acct # Account Name Reporting Preference*. ❒ Care Evolve ❒ Fax ❒ Email *If unmarked, we will use the account's default preferences or fax to new clients. Physician Specimen ID ❒ Blood in EDTA (5-6 mL in lavender top tube) ❒ DNA (>20 ug): Tissue source ______________ concentration ___ (ug/ml) Vol ___(ul) ❒ Oral Rinse (At least 30 mL of Scope oral rinse in a 50 mL centrifuge tube) ❒ Dried Blood Spots (2 cards) - Not accepted for any testing with a del/dup component ❒ Other __________________________(call lab) Patient has had a blood transfusion ❒ Yes ❒ No Date of last transfusion __/__/__ (2-4 weeks of wait time is required for some testing) Specimens are not accepted for patients who have had allogeneic bone marrow transplants. Clinical Diagnosis: _________________________ ICD-10 Codes: ________ Age at Initial Presentation: __________ Mailing address NPI # Medical Professional Signature (required) Genetic Counselor I have read the Informed Consent document and I give permission to GeneDx to perform genetic testing as described. I also give permission for my specimen and clinical information to be used in de-identified studies at GeneDx to improve genetic testing and for publication, if appropriate. My name or other personal identifying information will not be used in or linked to the results of any studies and publications. I also give GeneDx permission to inform me or my health care provider in the future about research opportunities, including treatments for the condition in my family. ❒ Check this box if you wish to opt out of being contacted for research studies. ❒ Check this box if you are a New York state resident, and give permission for GeneDx to retain any remaining sample longer than 60 days after the completion of testing. Street address 2 City State Zip code Phone Fax (important) Email Beeper Send Additional Report Copies To: Physician or GC/Acct # Fax#/Email/CE # Physician or GC/Acct # Patient/Guardian Signature Fax#/Email/CE # Payment Options Insurance Bill PATIENT STATUS – ONE MUST BE CHECKED ❒ Hospital Inpatient ❒ Hospital Outpatient ❒ Not a Hospital Patient Insurance Carrier Policy Name Insurance ID # Group # Secondary Insurance Carrier Name Date Patient Consent (sign here or on the consent document) Street address 1 ❒ Hold sample for Benefit Investigation (only if OOP cost is >$100) Name of Insured Insurance ID# Group # Date of Birth Name of Insured Date Referral/Prior Authorization # ________________ Please attach copy of Referral/authorization GeneDx Benefit Investigation # Insurance Address Date of Birth City State Zip Relationship to Insured ❒ Child ❒ Spouse ❒ Self ❒ Other _______ Relationship to Insured ❒ Child ❒ Spouse ❒ Self ❒ Other _______ Please include a copy of the front and back of the patient’s insurance card (include secondary when applicable) If you would like to expedite an assessment of your possible eligibility for GeneDx’s financial assistance program (FAP), please provide the number of your household members _____ and the annual income of your household $________. GeneDx may require additional information from you to complete an application for GeneDx’s financial assistance program. I represent that I am covered by insurance and authorize GeneDx, Inc. to give my designated insurance carrier, health plan, or third party administrator (collectively "Plan") the information on this form and other information provided by my health care provider necessary for reimbursement. I authorize GeneDx to inform my Plan of my test result only if test results are required for preauthorization of or payment for reflex/additional testing. I authorize Plan benefits to be payable to GeneDx. I understand that GeneDx will attempt to contact me if my out-of-pocket responsibility will be greater than $100 per test (for any reason, including co-insurance and deductible, or non-covered services). If GeneDx is unsuccessful in its attempts to contact me, I understand that it will be my responsibility to contact GeneDx to determine my out-of-pocket cost and to pay my out-of-pocket responsibility. I will cooperate fully with GeneDx by providing all necessary documents needed for Plan billing and appeals. I understand that I am responsible for sending GeneDx any and all of the money that I receive directly from my Plan in payment for this test. Reasonable collection and/or attorney’s fees, including filing and service fees, shall be assessed if the account is sent to collection but said fees shall not exceed those permitted by state law. I permit a copy of this authorization to be used in place of the original. Patient Signature (required)____________________________________________________________________________________ Date _____________________________ Institutional Bill Patient Bill GeneDx Account # Please bill my credit card (all major cards accepted) ❒ MasterCard ❒ Visa ❒ Discover ❒ American Express Amount _______________ I understand that my credit card will be charged the full amount for the testing. Hospital/Lab Name Name as it appears on card Contact Name Address City Phone © GeneDx 11/16 State Zip Code Account Number Expiration date Signature Date CVC For GeneDx Use Only Fax 207 Perry Parkway, Gaithersburg, MD 20877 • T: (888) 729-1206 (Toll-Free), (301) 519-2100 • F: (201) 421-2010 • www.genedx.com GUIDE FOR CARDIOMYOPATHY 9 Page 1 of 7 10 Genetic Test Results Nearly all test results fall into one of four categories: 1. Positive Result (pathogenic variant(s)) 2. Likely Pathogenic Variant Result 3. Variant of Uncertain Significance (VUS) Result 4. Negative Result (no variants of clinical significance) GeneDx test reports contain detailed information about a specific genetic result and, if available, medical management options. Genetic counseling is recommended prior to genetic testing to understand the benefits and limitations of testing and after genetic testing to discuss the implications of the genetic test results. Genetic counseling services across the country can be found at www.nsgc.org Positive Result t A positive result indicates a pathogenic (diseasecausing) genetic variant (change) was identified in a specific disease gene. This finding confirms an underlying genetic cause for the patient’s symptoms and provides a diagnosis of a specific genetic disorder, or indicates an increased risk for developing a genetic disorder. Knowledge of the specific pathogenic variant(s) provides valuable information to the patients, their health care providers and family members because it helps to determine the recurrence risk and to develop an appropriate medical management plan. A medical management plan may include lifestyle modifications, ongoing screening, preventative medications and measures, and/or surgical/medical device interventions. Furthermore, a positive genetic test result allows targeted testing of at-risk relatives to determine if any of them carry the pathogenic variant(s) as well as to address the recurrence risk of the disorder in future offspring. Cardiolo gy Genet ics Repor Cardiology Genetics Report Card GeneD x - 207 Perry Parkway - Gaithersburg , MD 20877 - Tel (301) 519-2100 - Fax (201) 421-2010 - com www.genedx. - 2100 - Fax (201 ) 421- 2010 - www .gene dx.co m - Page iology Genet ics Re port 3 of 7 GUIDE FOR CARDIOMYOPATHY 11 RESULTS / MANAGEMENT Pat ien t Na me : Da te of Bir th:Accession No: Spe cim GeneDx en Sub mit Date Typ Specimen Obtained: e: ter Or der Dates ID Specimen Received: ed By: No : Ge neD RAF1 Date Test(s) Started: x Acc Sum Date Da te ess ion mary:of Report: Spe cim No : Da te Spe cim en Ob tain Nam e: The MYBPC3 gene encodes cardiac myosin binding proteinPatChog in enic the sarcomere A-band and binds Pati ent ed: en Rec Date syndrowhich variant myosin heavy chain and titin in the thick and elastic filaments, involved Test(s) Birt h: eiv ed: me and are s in the in muscle Date of Da te Starte lentin Panel have gene et al., 2010). Pathogenic variants MYBPC3 have RAF1been reported iginthe Typ e: of Rep d: ication contraction (Hershberger es (for M2, been imen gen Dupl pathoge ort : Spec rep e tion/ mer cardiomyopathy in up F, toCAV 40%3,ofCHR patients with autosomal dominant familial hypertrophic (HCM) and s ID No: nic var ly called orted less have been g and Dele 3, BRA been reported FKTN, 2-4% of patients with autosomal(DC reporte dominant cardiomyopathy iants dilatedLEO Subm itter M) (Dh familial 2K1, y Sequencin 1, FKRP, A, in RD1, BAG have PARD frequently have d MAP opath By: FHL in ANK , and been in MYBPC3 iomy as man (Cirino and Ho, 2014; Hershberger and Morales, 2013). Pathogenic havein asso apany variants A, EMD(DCM) ALPK3, Ord ered reporte syndrome) LDB3, LMNK, MTTL1, ciat y as 17% ensive Card et al., (LVNC) Noo P2,been ALMS1, DSP, DTN also in association with left ventricular (Probst et(Allans ion wit nan syn noncompaction 2014). d in Compreh MTT infrequently A4, LAM ACTN2, DSC2, DSG2, associat I,reported of pati h Noo 3, on C1), LAM MTT : feat dro S, MYL and H, K, ents nan 2, et al., 2009). al., 2011; Dellefave ested ion wit me ure ACTC (ACT , DMD, DOL JPH2, JUP, KRA MTTG, MTT 7, MYL h chil Roberts, 201 syndrome with Noo , Approx s, cardiac is a develop Test(s) Requ D, ABCC9, DES 6, MYH dhooddefects S, ILK, 1). Add with mu nan , PRDM16 mental CSRP3, D6, MTT MYBPC3 p.Glu542Gln (GAA>CAA): c.1624 G>C exp in exon ima of the MYBPC3 PC3, MYH onset , and gene (NM_000256.3) uated: diso CRYAB, GLA, HCN4, HRAMTND5, MTN PKP2, PLN(E542Q) ecte 17 tely 80% C, MYB dilated itionally, ltiple dev P, TGFB3, , Genes Eval syndro d to develo of individ elopmen rder charact S2, MUR NRAS, PDLIM3, 1, TAZ, TCA cardiom RAF1 MTTp.E542Q: GATAD1 MIB1, MTND1, tal dela me wit uals p erized yopathy , MTTS1, NKX2.5, 5A, SGCD, SOS RD2, VCL abn h mu hypertr y (Ta by h Noo times MTTQ, ophic wit MAP2K2 NEXN, variant geneorm has alitpreviously TXNE542Q pathogenicRA F1 p.Rin the MYBPC3 sen ,The 2, SCN nan syn in rtaglia et short stat le lentreported NEBL, MTTM, ies, ocu ltipbeen carmultiple diomyGarcia-Castro ure, dys 41L MYPN, TTN, TTR association with HCM (Carrier RIT1, RYR MTTL2, et al., etneu al.,ral2003; Van Driestigin etesal., lar hyp : 1997; Richardsori opathy drome due al., 2002; morph is a2004; MYOZ2, RBM20, TNNT2, TPM1, ion 1, erte dea K2, diso All ificat (HC to RAF ic faci fne lorism, Helms ans MYL et al., 2009; Rodriguez-Garcia et al., 2010; Marsiglia Bos al., 2014). rdeet RAF1 p.Arg4 et al., 2013; ss Class M) r whi TNNI3, (Geetlbal., 2014; , PTPN11, pul Variant in severe familial pathoge on and Rob al 1Le chtoincl (Allan and sityvariant has also u (R4 This HCM cases where the individual was ogenicreported PRKAG2 TMPO, TNNC1, nicfound erts, 201 Tartagl mo Zygo Pathbeen stenosis udes mu son and Rob nic var 1L) (CG , A M43 ia iant ous var 1). ltip harbor a second pathogenic variant in a HCM-associated gene (Ingles et al., 2005; Olivotto et al., M, 201 , abnorm erts, TME G>CT iant of s are le Variant Heterozyg 0). been has been G): c.12 al gen lentigines, 2011). Noo 2008; Saltzman et al., 2010). The E542Q variant observed in multiple unrelated individuals erta ln publish unc DNA E italia, ECG 2 G> nan signclassified The Coding p.Glu542G ed ashas in con T in exo or POSITIV reta referred for cardiomyopathy genetic testing at GeneDx and been as a pathogenic ific ion R41 duction rdation a path anc n 2 of Classificat Americ L var ogenic e has bee (E542Q) of gro Gene c.1624 G>C likely pathogenic variant by other clinical laboratories iniant ClinVar the RA was not(SCV000059072.4, n iden wth, variant of Resu lt: sity F1 gen variant an ancestrSCV000219724.1, and tified Zygo Variant , nor SCV000253809.2, SCV000319843.1, SCV000207041.1, y in the observed SCV000280219.1; MYBPC3 e (NM in thes in the has it ous rtain likely variant in app _00288 NHLB with RAF1 e was bee Unce Additionally, the E542Q not observed anyrox significant populat Variant Heterozyget al., 2016). to L)Landrum TION I Exo ce 0.3) gene. imatelyinn rep orted other of imp ion fican eu (R41 frequency in approximately act sec and RPRETA DNA me Seqancestry s. 6,300 individuals European African American the The Signi ng g41L as The pro INTE 6,500 Codi ondary a ben p.Ar R41L perties SEE uen R41 sili ign var var NHLBI Exome Sequencing Project. sequence co analysi . This sub protein stru L variant cing Project individuals iant to iant has Gene c.122 G>T protein is a ified by s stitutio , indicat of Eur cture our kno not structu is inconsis ope as thes non-conse y were ident 75 nuclear ing it occurs wledge opathaffects RAF1 tent intonalter re/func Thisomy variant the last nucleotide of exon 17 and is predicted the splice donor site, rvative e is not an and Afr of the . cardi its pre at a pos residues tion. The Analyzing The P, lving any geneyDx. itionet al. (1997) differ amino acid a commo ican invo to abnormal splicing. from patient lymphocytes, diction Carrier iated with leading that is n re, cDNA FKRrefo ication in ExonArra s asstop based17 and introduces a premature to be assoc or duplreported path with conserv polarity, substitutio benign to whe that this variant to skipping of exon codon. ArrayDx: sis ogenic known ion on the Exonleads n, whi ther ed acro charge, variants panel. No delet or rare screeninmRNA CGH analy opath y panel in humancur heart muscle samples for the E542Qor not ch is this ted array Likewise, pathogenic g at this benign rently ava iomy Marston et al. (2012) screened the var ss species size and/or No other the 91 genes on concurrent targe ensive Card . This mutant ilabmRNA variant, and RT-PCR analysis showedinboth length . How the a full time. missense le info and a nonsense mRNA iant is preh of by result damagin ever, in ogen ic as c.1679G>C using analysis zed was found ded on the Com cannot rmation due to skipping of exon (reported alternate nomenclature). A study of fetal rat path is 17 also is g , that to the al it be analy inclu is unc inteon vidu not s. genes cardiomyocytes the E542Q variant has a dominant negative effect vari antsuggested indithat rpresarcomere genes are drial gene ted for lear whe hy. This d miss ense (Flavigny et al., following the 14 mitochon diagnos ther this . 1999). iomyopat 1 gene publ ishe offunction a card and var for is or use iant is gous HRAS, in the RAF tic form s and d for is hete rozyt with a gene sign ificaInnce family summary, E542Q in the MYBPC3 of 91 gene gene is interpreted as a pathogenic variant. vidu al mem analysis This indi gene, consistenant of unce rtain ber y. in sequence omyopath variants includes tion: MYBPC3gous for a vari GeneDx us forms of cardi with pathogenic Interpreta Panel at rger and hete rozy opathy cause vario and is associated cells (Hershbe l encode al e Cardiomy genes that ition pane myocardi prehensiv analysis of 75 ogeneous cond on this ers. ins in the of the genes The Com action partn y uplication genetically heter , or other prote rs and inter including those deletion/d 2014). Man is a actile opathy al, contr McNally et al., regulatory facto myopathies, l ; of Cardiomy ding cytoskelet ogica as their Ho, 2014 a variety rophysiol le, as well Gen eDx iated with genes enco ; Cirino and cause elect 2015 s assoc heart musc may also thatPerr s 207 Morales, proteins of the sarcomeric gene as gene c y Park des nonway ts, as well sarcomeri also incluGeneDx - defec 207 Perry Parkway Gaithersburg, MD 20877 Tel (301) 519-2100 Fax (201) 421-2010 www.genedx.com - Page 2 of 7 l bolic Gaithers or meta This pane burg storage , MD 2087 caused by 7 es. Tel of 7 disturbanc Page 1 (301) 519Patient Name: Date of Birth: No: Acce ssion Specimen Type:ined : Gen eDx Obta : Spec imen ID No: Date Submitters Rece ived Spec imenBy: DateOrdered Started: Test(s) Date MYBPC3 Summary: Repo rt: Date of Likely Pathogenic Variant Result A likely pathogenic result indicates the presence of a genetic variant(s) in a specific gene for which there is significant, but not conclusive, evidence that the variant(s) causes a genetic disorder, or poses an increased risk for developing other diseases. With this type of result, medical management options and testing of family members are often similar to as previously described for a positive result. Variant of Uncertain Significance (VUS) Result RESULTS / MANAGEMENT A variant of uncertain significance (VUS) result indicates an inconclusive outcome of a genetic test. A VUS is a change in a gene for which the association with disease cannot be clearly established. The available information for the variant is either insufficient or conflicting, and it cannot be determined at this time whether the variant is associated with a specific genetic disorder or if the variant is an unrelated (benign) variant unrelated to the patient’s disorder. In the case of a VUS test result, all medical management recommendations should be based on clinical symptoms, and past personal and family history. Predictive genetic testing of family members for a VUS is not indicated. Nevertheless, in some circumstances, it can be useful to test other family members through our Variant Testing Program to gain more evidence about the variant itself and its possible association with disease. Over time, additional clinical evidence may be collected about certain VUS, which could ultimately lead to the reclassification of the variant and test result. 12 Negative Result A negative result indicates that the genetic test did not identify reportable, medically relevant variant(s) in any of the genes tested. Therefore, the cause for the patient’s disorder or family history remains unknown. Although the patient’s disorder may be caused by non-genetic factors, a negative genetic test result does not completely rule out an underlying genetic cause. For example, the patient’s disorder may be due to unidentified genetic changes in gene regions or genes not included in the initial test. Depending on the patient’s personal and family health history, additional genetic testing may be indicated for the patient or another family member. A genetic specialist or other health care providers can determine if further genetic testing is appropriate. In case of a negative genetic test result, all medical management recommendations should be based on clinical symptoms in addition to past personal and family history. Predictive genetic testing of family members is not available. When an individual tests negative for a familial pathogenic variant that was previously identified in another affected family member, this is considered a ‘true’ negative test result. In most cases, this means that the individual has no greater risk for developing the specific genetic disorder that runs in the family than anyone in the general population. GUIDE FOR CARDIOMYOPATHY 13 Medical Management Based on Genetic Test Results There are a variety of screening and management strategies available to patients with heritable cardiomyopathies. A specific patient’s management plan should be personalized and based on his or her genetic test result (type of cardiomyopathy and in some cases, specific genotype), as well as their personal and family health histories. The table below gives a general overview of some types of medical management and surveillance options available to patients with cardiomyopathies, but is not meant to be all inclusive. Recommendation General Recommendations Category Lifestyle Modification • Patients should avoid tobacco use and maintain a normal blood pressure and a healthy weight and diet. Moderate physical exercise is often appropriate, however, patients should consult their health care provider about specific exercise recommendations.9 Screening • Affected patients should receive follow-up care as recommended by their doctor. At-risk family members should consider cardiac screening, which typically involves electrocardiogram (ECG) and echocardiogram (echo), but may also include a cardiac MRI and/or Holter monitor evaluation. 10,11 Medications • A variety of medications can be used to control symptoms and prevent progression of heart failure and irregular heart rhythms, depending on the type of cardiomyopathy. Patients should consult their health care provider about specific medication recommendations. Procedures/Surgery • In patients with HCM, septal myectomy or alcohol septal ablation may be recommended if symptoms or blood flow obstruction is severe. • If cardiomyopathy leads to advanced heart failure, a heart transplant may be recommended. Implanted Devices • Guidelines exist for pacemaker/ICD implantation for patients with cardiomyopathy.10,11 Left ventricular assist devices may be considered in patients with end stage heart failure and are usually reserved for those with DCM. Family Planning/ Pregnancy • Patients should discuss family planning decisions with their doctor prior to attempting a pregnancy. In certain cases, pregnancy may not be safe for women with a cardiomyopathy and advanced heart failure. In cases of pregnancy, affected women should be seen by providers who are experts in the care of pregnant women with cardiovascular disease. 14 Implications for Family Members Regardless of the result, patients should share their test report with their blood relatives, who can then discuss the results with their health care providers. Sharing a copy of the test result with family members and health care providers will help to determine if additional testing is necessary and will ensure that the proper test is ordered for relatives, if indicated. The majority of genes associated with heritable cardiomyopathies follow an autosomal dominant inheritance pattern, which means that only one pathogenic variant is required to cause disease. Individuals with a disease-causing variant for an autosomal dominant condition have a 50% chance of passing on that variant and the associated risk to each child. Other first degree relatives (parents, siblings) may also be at risk, depending upon whether the variant arose de novo or was inherited from a parent. The risk for other family members to carry the variant depends on how closely related they are to the person with a positive or likely pathogenic test result. It is important to remember that for most of these genes, not all people who inherit a pathogenic or likely pathogenic variant will develop cardiomyopathy. In some cases, certain genes known to cause cardiomyopathy have been associated with other types of inheritance, including: autosomal recessive, X-linked, or mitochondrial. Table 3 summarizes these inheritance patterns below. Description Autosomal Recessive • Two pathogenic variants are required to cause disease, one in each copy of the gene. Each parent is usually carrier of one of the variants. X-linked • The pathogenic variant is located on the X-chromosome. Males are more likely to express the associated condition (and features) since they carry only one X chromosome. Females may express the phenotype in some instances, usually in a milder form. Mitochondrial • The pathogenic variant is located in the mitochondrial DNA (mtDNA) as opposed to the nuclear DNA (nDNA). Inheritance of the pathogenic variant is passed on by mothers (but NOT fathers) to their offspring. Table 3: Other inheritance patterns seen with inherited cardiomyopathies. Please refer to the GeneDx genetic test report for additional information regarding the specific inheritance pattern for any variants found during testing. GUIDE FOR CARDIOMYOPATHY 15 KEY INFORMATION Inheritance Genetic Counseling Prior to genetic testing, patients should speak with their health care provider and/or a genetics specialist about their personal and family health history. Health care providers should discuss the benefits and limitations of testing, as well as possible test results. These conversations help to determine if the patient is an appropriate candidate for testing, facilitate the ordering of appropriate test(s) and ensure that the patient has agreed to the proposed genetic testing (written informed consent). If pathogenic variant(s) have already been identified in a family member, testing of the specific variant(s) is appropriate. If no pathogenic variant(s) are known in a family with a specific genetic disorder, an affected family member with the highest likelihood of a positive test outcome (an individual manifesting associated clinical symptoms) is ideally the best person for initial testing within a family. In instances when an affected family member is not available, testing of an unaffected family member may be considered, although a negative test result will not guarantee that the unaffected individual does not have an increased risk to develop the clinical symptoms that are present in the family. KEY INFORMATION Once a patient makes the decision to undergo genetic testing, post-test genetic counseling is recommended to understand the implications of the results, including a discussion of the appropriate medical management based on both the test results and the patient’s medical and family history. Genetic counseling services across the country can be found at www.nsgc.org 16 Insurance Coverage and Cost for Genetic Testing GeneDx accepts all commercial insurance plans and is a Medicare provider. Additionally, GeneDx is a registered provider with several Medicaid plans. If a patient does not have health insurance coverage or cannot afford to pay the cost of testing, GeneDx offers a financial assistance program to help ensure that all patients have access to medically necessary genetic testing. For more information on the paperwork that is required by some insurance carriers, as well as additional details on patient billing and our financial assistance program, please visit our website: www.genedx.com/billing Genetic Information Nondiscrimation Act The Genetic Information Nondiscrimination Act of 2008, also referred to as GINA, is a federal law that protects Americans from discrimination by health insurance companies and employers based on their genetic information. However, this law does not cover life insurance, disability insurance, or long-term care insurance. GINA’s employment protections do not extend to individuals in the U.S. military, federal employees, Veterans Health Administration and Indian Health Service. Some of these organizations may have internal policies to address genetic discrimination. For more information, please visit: http://genome.gov/10002328 GUIDE FOR CARDIOMYOPATHY 17 Resources for Patients GeneReviews ARVC: www.ncbi.nlm.nih.gov/books/NBK1131 DCM: www.ncbi.nlm.nih.gov/books/NBK1309 HCM: www.ncbi.nlm.nih.gov/books/NBK1768 National Institutes of Health Genetics Home Reference (NIH/GHR) ARVC: ghr.nlm.nih.gov/condition/arrhythmogenic-rightventricular-cardiomyopathy RCM: ghr.nlm.nih.gov/condition/familial-restrictivecardiomyopathy National Heart, Lung, and Blood Institute www.nhlbi.nih.gov Patient Support Organizations Cardiomyopathy UK: the heart muscle charity: www.cardiomyopathy.org Johns Hopkins ARVC/D Registry: www.hopkinsmedicine.org/heart_vascular_institute/clinical_ services/centers_excellence/arvd/patient_resources/registry.html Hypertrophic Cardiomyopathy Association: www.4hcm.org Children’s Cardiomyopathy Foundation: www.childrenscardiomyopathy.org 18 References 1. Maron BJ, Towbin JA, Thiene G, Antzelevitch C, Corrado D, Arnett D, Moss AJ, Seidman CE, Young JB; Contemporary definitions and classification of the cardiomyopathies: an American Heart Association Scientific Statement from the Council on Clinical Cardiology, Heart Failure and Transplantation Committee; Quality of Care and Outcomes Research and Functional Genomics and Translational Biology Interdisciplinary Working Groups; and Council on Epidemiology and Prevention. Circulation. 2006 Apr 11;113(14):1807-16. Epub 2006 Mar 27. 2. McNally E, MacLeod H, and Dellefave L. Arrhythmogenic right ventricular dysplasia/ cardiomypathy, autosomal dominant. In: Pagon RA, Bird TD, Dolan CR, Stephens K, Adam MP, editors. SourceGeneReviews ™ [Internet]. Seattle (WA): University of Washington, Seattle; 1993-. 2005 Apr 18 [updated 2014 Jan 9]. 3. Thiene G, Corrado D, Basso C. Arrhythmogenic right ventricular cardiomyopathy/ dysplasia. Orphanet J Rare Dis. 2007 Nov 14; 2:45. 4. Hershberger RE, Kushner JD, Parks SB. Dilated cardiomyopathy overview. In: Pagon RA, Bird TD, Dolan CR, Stephens K, Adam MP, editors. SourceGeneReviews ™ [Internet]. Seattle (WA): University of Washington, Seattle; 1993-. 2007 Jul 27 [updated 2015 Sept 24]. 5. Marian AJ, Roberts R. Molecular genetics of hypertrophic cardiomyopathy. Annu Rev Med. 1995; 46:213-22.. 6. NSGC Cardiovasular SIG Pocket Guide “Indications for Referral to cardiovascular genetics.” http:// www.nsgc.org/CardioGuide.. 7. HRS/EHRA expert consensus statement on the state of genetic testing for the channelopathies and cardiomyopathies. Heart Rhythm 2011 8(8):1308-1339. 8. Eliott et al. 2014 ESC Guidelins on diagnosis and management of hypertrophic cardiomyopathy: the Task Force for the Diagnosis and Management of Hypertrophic Cardiomyopathy of the European Sociaety of Cardiology (ESC). Eur HeartJ. 2014 Oct 14;35(39):2733-79. 9. Maron BJ, Chaitman BR, Ackerman MJ, Bayés de Luna A, Corrado D, Crosson JE, Deal BJ, Driscoll DJ, Estes NA 3rd, Araújo CG, Liang DH, Mitten MJ, Myerburg RJ, Pelliccia A, Thompson PD, Towbin JA, Van Camp SP; Working Groups of the American Heart Association Committee on Exercise, Cardiac Rehabilitation, and Prevention; Councils on Clinical Cardiology and Cardiovascular Disease in the Young. Recommendations for physical activity and recreational sports participation for young patients with genetic cardiovascular diseases. Circulation. 2004 Jun 8;109(22):280716. Review 10.Hershberger R, Lindenfeld J, Mestroni L, et al. Genetic evaluation of cardiomyopathy—a Heart Failure Society of America practice guideline. J Card Fail. 2009 Mar; 15(2):83-97. 11.American College of Cardiology Foundation Task Force on Expert Consensus Documents, Hundley WG, Bluemke DA, Finn JP, Flamm SD, Fogel MA, Friedrich MG, Ho VB, Jerosch-Herold M, Kramer CM, Manning WJ, Patel M, Pohost GM, Stillman AE, White RD, Woodard PK. ACCF/ACR/AHA/NASCI/SCMR 2010 expert consensus document on cardiovascular magnetic resonance: a report of the American College of Cardiology Foundation Task Force on Expert Consensus Documents. J Am Coll Cardiol. 2010 Jun 8;55(23):2614-62. doi: 10.1016/j.jacc.2009.11.011. GUIDE FOR CARDIOMYOPATHY 19 Notes 20 Notes GUIDE FOR CARDIOMYOPATHY 21 About GeneDx GeneDx was founded in 2000 by two scientists from the National Institutes of Health (NIH) to address the needs of patients diagnosed with rare disorders and the clinicians treating these conditions. Today, GeneDx has grown into a global industry leader in genomics, having provided testing to patients and their families in over 55 countries. Led by its world-renowned whole exome sequencing program, and an unparalleled comprehensive genetic testing menu, GeneDx has a continued expertise in rare and ultra-rare disorders. Additionally, GeneDx also offers a number of other genetic testing services, including: diagnostic testing for hereditary cancers, cardiac, mitochondrial, and neurological disorders, prenatal diagnostics, and targeted variant testing. At GeneDx, our technical services are backed by our unmatched scientific expertise and our superior customer support. Our growing staff includes more than 30 geneticists and 100 genetic counselors specializing in clinical genetics, molecular genetics, metabolic genetics, and cytogenetics who are just a phone call or email away to assist you with your questions and testing needs. We invite you to visit our website: www.genedx.com to learn more about us. 207 Perry Parkway Gaithersburg, MD 20877 T 1 888 729 1206 (Toll-free), 1 301 519 2100 • F 1 201 421 2010 E [email protected] • www.genedx.com © 2016 GeneDx. All rights reserved. 40235 V1 11/16 Information current as of 11/16