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Anchors and Linkers for
Solid-Phase Synthesis
General, Examples for Functional
Groups
Carolin Pauker
Definitions
Spacer
…
Located between resin carrier and linker
…
Reduces steric hinderance
…
Modifies for example hydrophilicity and
hydrophobicity
…
Remains after cleavage at the resin carrier
Linker
…
Bifunctional molecule one hand binds
irreverible to resin, other hand binds
reversible to desired molecule
…
Remains after cleavage at the resin
Anchor
…
Resin-immobilized functional group forming
a cleavable coupling
…
Linker becomes anchor after immobilizing
…
Direct syntheses on resin
Conditions for Linkers
Remaining stable during removal of Nterminal-protecting group and the whole
syntheses
„ Removable under mild conditions without
damaging the final product
„ Resin with different anchor structures
requires orthogonal cleavage conditions
> multiple products
„
Difficulties
Very large number (over 400 linkers)
„ Many trival names (IUPAC nomenclature
is complicated and inconvenient)
„ Difficult to find appropriate anchor for
specific reaction conditions
„ Very large number of different applications
„
Cleavage Methods
Acid
„ Base or nucleophilic
„ Hydrogenolysis
„ Enzymatic
„ Palladium catalysed
„ Photochemical
„ Oxidative or reductive
„
Depending on desired functional group in the
product
Acid-labile Anchors
„
Mostly involved in peptide and combinatorial
chemistry
„
Cleavage reagents: HF, HBr, TFA and others
„
High number of products possible
„
Electropositive substituents (methoxy, amino or
hydroxy groups) raise the stability formed
cations
> usage of weaker acid
Examples for Acid Labile Anchors
Anchors Cleaved by Nucleophiles
„
Based on β-elimination, hydrolysis, re-esterfication
or aminolysis
„
Cleavage reagents
NaOH
Amine/NH3
Hydrazine
Alcohol
Product
Carboxylic Acid
Carboxamine
Hydrazide
Carboxylic acid ester
Examples for Linkers Cleaved
by Base or Nucleophiles
Reduktive Cleavage
„
„
Orthogonal to many other methods
Example: Desulfurization by using Raney
Ni/H2
Oxidative Cleavage
„
„
Different approaches like ozonolysis of
alkene
Not compatible with groups modified by
oxidizing agents
Other Likers
Photolabile linkers
„ Traceless linkers
„ Safty catch linkers
„ Multifunctional anchors (various endgroups can be generated by the use of
different cleavage strategies)
„
Literature
„
Jung G. (ed.): Combinatorial Chemistry, Synthesis, Analysis,
Screening, Wiley-VCH, Weinheim, 1999
„
Jung G. (ed.): Combinatorial Peptide and non Peptide Libraries, A
Handbook, Wiley-VCH, Weinheim, 1996
„
Guillier, Orain, Bradley : Linkers and Cleavage Strategies in Solid
Phase Organic Synthesis and Combinatorial Chemistry. Chem. Rev.
2000, 100, 2091-2157
„
Handout: Combinatorial Chemistry and Synthesis on Solid Support,
B. König, SS 2006
Thank you for attention