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Chapter 1 Notes – Introduction: Evolution and the Foundation of Biology Campbell Biology In Focus KEY CONCEPTS: 1.1 Studying the diverse forms of life reveals common themes 1.2 The Core Theme: Evolution accounts for the unity and diversity of life 1.3 Biological inquiry entails forming and testing hypotheses based on observations of nature Read Overview Study Skill: define adaptation – evolution – Concept 1.1 Studying the diverse forms of life reveals common themes Theme: New Properties Emerge at Successive Levels of Biological Organization - reductionism – approach of reducing complex systems to simpler components that are more manageable to study - emergent properties – novel properties that emerge with increasing levels of complexity due to the arrangement and interactions of parts Study Skill: READ about the levels of biological organization shown in Figure 1.3: - systems biology – exploration of a biological system by analyzing the interactions among its parts complements reductionism Structure and Function - correlation between structure and function at every level of biological hierarchy The Cell: An Organism’s Basic Unit of Structure and Function - - cell – smallest unit of organization that can perform all required activities all cells have: o plasma membrane o DNA o cytoskeleton/cytosol o ribosomes 2 types of cells: o prokaryotic – bacteria & archaea no nucleus or membrane-bound organelles o eukaryotic – all other organisms (protists, fungi, animals, plants) have a nucleus and membrane-bound organelles Theme: Life’s Processes Involve the Expression of Transmission of Genetic Information - chromosomes – structures that contain a single molecule of DNA each DNA – deoxyribonucleic acid; the cell’s genetic material DNA Structure and Function: READ pp. 5-6 Study Skill: What must happen before a cell divides? _________________ Why? - - gene – unit of inheritance o encodes information necessary to build all of the molecules synthesized within a cell o stretch of DNA on a particular chromosome at a particular locus o one of hundreds or thousands per chromosome o transmitted parent to offspring structure of DNA allows it to store information o double helix o 4 nucleotides: adenine (A) thymine (T) cytosine (C) guanine (G) - - o specific sequences of the 4 nucleotides encode information in genes genes in the DNA code for proteins, including enzymes intermediate molecule between DNA and protein is RNA o DNA transcribed into RNA o RNA translated into protein o transcription + translation = gene expression genetic code is the same for all organisms o differences among organisms due to differences in nucleotide sequences RNA – many roles o each RNA molecule specified by a gene o production of RNA also called gene expression Genomics: Large-scale Analysis of DNA Sequences - genome – “library” of genetic instructions that an organism inherits genomics – study of whole sets of genes in one or more species o possibly because of 3 important developments: 1) high throughput technology – tools that can analyze biological materials rapidly 2) bioinformatics – use of computational tools to store, organize, and analyze the huge volume of data resulting from high throughput technologies 3) interdisciplinary research items Theme: Life Requires the Transfer and Transformation of Matter and Energy - work = moving, growing, reproducing, and cell activity o requires energy transformations – light energy (sun) chemical energy (glucose) chemical energy (ATP) thermal energy (heat) nutrient cycling – plants absorb nutrients incorporated into plant body eaten by consumers incorporated into body death and decomposition plants absorb nutrients… Theme: Organisms Interact with Other Organisms and the Physical Environment Study Skill: READ p. 7 Give 3 ways in which organisms interact with their physical environment. Identify with the correct terminology from the ecology unit the organism interactions described. Evolution, The Core Theme of Biology Complete Concept Check 1.1 1. For each biological level in Figure 1.3, write a sentence that includes components from the precious (lower) level of biological organization; for example: “A community consists of populations of various species inhabiting a certain area.” 2. Identify the theme or themes exemplified by (a) the sharp spines of a porcupine, (b) the cloning of a plant from a single cell, (c) a hummingbird using sugar to power its flight. 3. WHAT IF? For each theme discussed in this section, give an example not mentioned in the text. Concept 1.2 The Core Theme: Evolution Accounts for the Unity and Diversity of Life Classifying the Diversity of Life: The Three Domains of Life Bacteria – prokaryotic bacteria Archaea – prokaryotic archaeans Eukarya – eukaryotic plants, fungi, animals and protists Levels of Classification: Domain Kingdom Phylum Class Order Family Genus species Unity in the Diversity of Life READ pp. 8-9 Charles Darwin and the Theory of Natural Selection - On the Origin of Species by Means of Natural Selection o o o - written by Charles Darwin between 1844 & 1858 based on work conducted between 1831 and 1844 published in 1859 2 main points o 1) species have arisen from a succession of ancestors that differed from them = descent with modification o 2) natural selection individuals in a population vary in their traits, many of which are heritable populations can produce more offspring than can survive to reproduce species are adapted to their environment Therefore, individuals with inherited traits that are better suited to the local environment are more likely to survive and reproduce The Tree of Life - shared anatomy reflects inheritance from a common ancestor diversity results from modifications by natural selection over millions of years in different environmental contexts Figure 1.16 – Galapagos finches o Be sure you can read an evolutionary or phylogenetic tree o Each branch point represents the common ancestor of the evolutionary lineages originating there and their descendants Complete Concept Check 1.2 1. How is a mailing address analogous to biology’s hierarchical classification system? 2. Explain why “editing” is an appropriate metaphor for how natural selection acts on a population’s heritable variation. 3. WHAT IF? Recent evidence indicates that fungi and animals are more closely related to each other than either of these kingdoms is to plants. Draw a simple branching pattern that symbolizes the proposed relationship between these three kingdoms of multicellular eukaryotes. Concept 1.3 Biological inquiry entails forming and testing hypotheses based on observations of nature - science – a way of knowing - inquiry – a search for information and explanations of natural phenomena o at the heart of science o process includes a cycle of: making observations forming logical hypotheses testing the hypotheses making observations… Making Observations - data – recorded observations; items of information on which scientific inquiry is based o qualitative – recorded descriptions o quantitative – information expressed as numerical measurements and organized into tables or graphs inductive reasoning – process of deriving generalizations from a large number of specific observations - hypothesis – tentative answer to a well-framed question; an explanation on trial - deductive reasoning – predictions of results that will be found if a particular hypothesis is correct o “If…then…” logic Forming and Testing Hypotheses Deductive Reasoning Questions That Can and Cannot Be Addressed by Science - hypotheses must be falsifiable Case Study: Investigating Coat Coloration in Mouse Populations – READ o Study Figure 1.19 – Answer “What If?” Experimental Controls - controlled experiment – one that is designed to compare an experimental group with a central group o experimental and control groups differ in only one factor o does not mean everything else is held constant – can be impossible in nature Theories in Science - theory – broader than a hypothesis o supported by a much greater body of evidence o can be modified or rejected in the face of new data/evidence Science as a Social Process: Community and Diversity READ - technology – field of study interdependent on science whose goal is to apply scientific knowledge for a specific purpose Complete Concept Check 1.3 1. Contrast inductive reasoning with deductive reasoning. 2. What variable was tested in Hoekstra’s mouse experiment? 3. Why is natural selection called a theory rather than a hypothesis? 4. How does science differ from technology? Study the Summary of Key Concepts Complete Test Your Understanding #1 – 10 Scientific Skills Exercise: Interpreting a Pair of Bar Graphs How Much Does Camouflage Affect Predation on Mice by Owls with and without Moonlight? Nearly half a century ago, D.W. Kaufman investigated the effect of prey camouflage on predation. Kaufman tested the hypothesis that the amount of contrast between the coat color of a mouse and the color of its surroundings would affect the rate of nighttime predation by owls. He also hypothesized that the color contrast would be affected by the amount of moonlight. In this exercise, you will analyze data from his owl-mouse predation studies. How the Experiment was Done Pairs of mice (Peromyscus polionotus) with different coat colors, one light brown and one dark brown were released simultaneously into an enclosure that contained a hungry owl. The researcher recorded the color of the mouse that was first caught by the owl. If the owl did not catch either mouse within 15 minutes, the test was recorded as zero. The release trials were repeated multiple times in enclosures with either a dark-colored soil surface or a light-colored soil surface. The presence or absence of moonlight during each assay was recorded, Data from the Experiment Interpret the Data 1. First, make sure you understand how the graphs are set up. Graph A shows data from the light-colored soil enclosure and Graph B from the dark-colored enclosure, but in all other respects the graphs are the same. (a) There is more than one independent variable in these graphs. What are the independent variables, the variables that were tested by the researcher? _________________________________ & _____________________________ Which axis of the graphs has the independent variables? _______________ (b) What is the dependent variable, the response to the variables being tested? ______________________ ________________________________________________________ Which axis of the graphs has the dependent variable? __________ 2. (a) How many dark brown mice were caught in the light-colored soil enclosure on a moonlit night? ___________ (b) How many dark brown mice were caught in the dark-colored soil enclosure on a moonlight night? _________ (c) On a moonlit night, would a dark brown mouse be more likely to escape predation by owls on dark- or light-colored soil? ___________ Explain your answer. __________________________________________________________ ____________________________________________________________________________ 3. (a) Is a dark brown mouse on dark-colored soil more likely to escape predation under a full moon or with no moon? __________________ (b) A light brown mouse on light-colored soil? _________________ Explain. ___________________________________________________ ____________________________________________________________________________ 4. (a) Under which conditions would a dark brown mouse be most likely to escape predation at night? ____________________________________________________________ (b) A light brown mouse? ______________________________________________________ ____________________________________________________________________________ 5. (a) What combination of independent variables led to the highest predation level in enclosures with light-colored soil? _________________________________________________________ ____________________________________________________________________________ (b) What combination of independent variables led to the highest predation level in enclosures with dark-colored soil? _______________________________________________________ ____________________________________________________________________________ (c) What relationship, if any, do you see in your answers to parts (a) and (b)? ____________ ____________________________________________________________________________ ____________________________________________________________________________ 6. What conditions are most deadly for both colors of mice? ____________________________ ____________________________________________________________________________ ____________________________________________________________________________ 7. Combining the data shown in both graphs, estimate the total number of mice caught in moonlight versus no-moonlight conditions. Which condition is optimal for predation by the owl on mice? ___________________________________________________________________ Explain your answer. _________________________________________________________ ____________________________________________________________________________ Chapter 1 Vocabulary For most chapters you will have vocabulary. You will generally have a vocabulary quiz, either in class with just you and your memory or “take-home” which means you would be able to look up the correct answers. The best way to use these take-home quizzes to LEARN the terms (they’re take-home because we don’t have enough time to do them all in class, not because they’re less important) is to READ the chapter, take your own notes, define the terms for yourself, study them, then take the quiz on your own like it is “real”. Then, check your answers against your notes when you finish. evolution biology reductionism emergent properties biosphere ecosystem community population organism organ system organ tissue cell organelle molecule systems biology eukaryotic cell prokaryotic cell deoxyribonucleic acid gene gene expression genome genomics bioinformatics Bacteria Archaea Eukarya natural selection science inquiry data inductive reasoning qualitative data quantitative data hypothesis deductive reasoning control group experimental group controlled experiment theory technology