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G1600A CE Fraction Collection System Overview This document is believed to be accurate and up-to-date. However, Agilent Technologies, Inc. cannot assume responsibility for the use of this material. The information contained herein is intended for use by informed individuals who can and must determine its fitness for their purpose. Document1 http:// www.chem.agilent.com Page 1 of 1 Fraction Collection In the bioscience and pharmaceutical areas the capability of fraction collection is frequently required in order to characterize separated components by off-line analysis techniques such as MALDI/TOF-MS or protein sequencing. Figure 50 shows general principle of how fraction collection in CE works. Figure 50 Fraction Collection Apply pressure or voltage Peak detection Buffer Buffer Collection vial Fraction collection uses information from the built-in diode array detector to find the exact time when a peak appears at the outlet electrode. A peak is detected if the peak signal exceeds the threshold set in the diode array set up screen. Therefore some diode array settings have to be adjusted such as selecting spectra storing. When a new peak is detected, the time is calculated in which the peak will leave the capillary. The length of the capillary between the detection window and the outlet is fixed to 8.5 cm. In addition some settings have to be entered, such as the inner diameter of the capillary, the correct total and effective capillary length in the Capillary Information screen, e.g. inner diameter is 100 µm, total length is 96.5 cm and effective length 88 cm as shown in Figure 51: 112 Capillary Electrophoresis Fraction Collection Figure 51 Capillary Information Screen Peaks may be collected either by using pressure or electrokinetic elution. Since peak volumes are generally in the size of nl volumes, peaks are collected into microvials containing about 10–15 µl of an appropriate solution (for correct selection, see Table 7). The lift offset should be set to 3 mm in the CE Home Values menu. Applications include fraction collection from CZE, MECC, from CGE analyses using fixed gels and even from CIEF separations. The instrument logbook shows the steps done during fraction collection e.q. when a peak has been detected, the vial in which the peak has been collected etc. 113