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CARBON CHEMISTRY AND FUNCTIONAL GROUPS BEGINS Hi there boys and girls. I’m Mr. Heat Miser and I will be your instructor for this lesson. I’m going to be honest with you right away and warn you that I am very hot headed so you better listen carefully! Observe the CARBON TETRAHEDRON. In this model carbon is shown in red at the center. There are four bonds projecting out of that carbon (tetra means four) and each bond is an equal distance away from each other in three dimensions. The blue balls could represent various element substitutions that form single bonds with the carbon. We are not concerned at this moment with the blue representation, only the shape of the overall carbon tetrahedron. The bonds are equidistant as the angle remains the same between any of the bonds in three dimensions(109.50). It is like a small tripod with a camera on the top. No matter how it is oriented, it remains the same Now one of the main reasons that I took this job to introduce Carbon or Organic chemistry to you is my personal interest (obsession) with heat release and the fact that hydrocarbons are just so darn flammable! Well down to business. Carbon is essential to living things and thus the study of carbon is the study of organic chemistry. The Carbohydrates, Proteins, Fats and Nucleic acids all have carbon as a key element. Carbon can also create very large molecules by sharing its covalent electrons with other carbons which results in long chains or branched chains as we shall see later. Lets start with a very simple hydrocarbon. This is methane and remember that for each shared pair of electrons we create one single bond. Here they are represented by the line connecting the hydrogen to the carbon in my drawing. Now once again, I must remind you that this method of drawing is okay on paper but really represents the carbon tetrahedron model shape as shown below. The three dimensional model of the methane molecule shows the black carbon atom in the center and four white hydrogen atoms surrounding it. Carbons can combine with other molecules to form chemical families. Just like in families, children share a last name , chemical families share something called a functional group. This gives all the chemicals within the family very similar characteristics. I’ll give examples later. NOTE these are all non-polar (symmetry) Since the children, however, are not identical, they can be identified by their first names. This variable or “R” group attaches to the functional groups to make the overall molecules have slightly different properties. Lets examine these names given to the first four members of the hydrocarbon group. VARIABLE “R” group MOLECULAR FORMULA ADD HYDROGEN HYDROCARBON Meth – 1 carbon METHANE Eth – 2 carbons ETHANE Prop- 3 carbons PROPANE But -4 carbons BUTANE FAMILY ENDS WITH ANE MOLECULAR FORM You probably appreciate the chemistry of hydrocarbons a little more now that you know what they look like. My first little hydrocarbon, methane. is also called natural gas and is commonly used to keep your house warm in the winter and to heat your hot water tank so you can take a warm shower. Just think what your life would be like without him! He may be small, but just look at the explosion he caused here! METHANE + OXYGEN PRODUCTS? When methane or any other hydrocarbon burns, they combust in the presence of oxygen gas into --- let me see--PRODUCTS ARE: CARBON DIOXIDE + WATER + ENERGY!!!!! Shown below is the balanced chemical equation for the combustion of methane 2 CH3OH + 3 O2 → 2 CO2 + 4 H2O DID YOU KNOW? Methane is classified as a greenhouse gas when released unburned. More cows (even the Chinese now want to eat burgers) means more methane gas released by the cow intestines! The methane gas used to heat your house naturally has no smell. The smell has been added and is a type of mercaptan that smells of sulphur to alert you in case of a gas leak. Mercaptan is a thiol Biomass can be decomposed by microorganisms and turned into methane gas which can be trapped and converted into a usable energy form. GREEN ENERGY – HOW ABOUT THAT ALL YOU HOT SHOT POLITICIANS! VARIABLE NAME Now there are various functional groups and many different chemical families. The next functional group I would like to examine is the hydroxyl group in the alcohol family. I like this family, they are all quite flammable. In addition they have an added advantage over the hydrocarbons, they all mix with water (polar), so I can control their flames with simple dilution! A 50/50 alcohol water mixture burns nicely! HYDROXYL GROUP TYPE OF ALCOHOL FACTS ADDED OH METH METHANOL Toxic sweet alcohol antifreeze fuel solvent (wood alcohol) ETH ETHANOL Toxic but can be detoxified by liver cells –drinking alcohol PROP PROPANOL Toxic BUT BUTANOL Toxic Now take a look at these structures These two are both examples of propanol. They share the same chemical formula C3H7OH . They however, are different in their structural formula and as a result actually have different properties. They are called ISOMERS If you see the word iso in front of a chemical name it means it is an isomer as shown above. I have an interesting problem for you. If both of these mirror images of me are possible, are both actually identical or are they different? Now try this. Two isomers (lactic acid) shown are mirror images of each other and are called stereoisomers. Can they be superimposed on each other to show that they are identical or not? Enantiomers are stereoisomers that are non-superimposable mirror images. These molecules are DIFFERENT!! JUST LIKE THE ABOVE PICTURES OF ME. Stereoisomers differ only in their 3D structure Chiral describes a molecule that is different from its mirror image; enantiomers are chiral The physical and chemical characteristics of enantiomers, however, are the same. JUST LIKE THE IMAGES OF ME WOULD DO EXACTLY THE SAME THING, THEY ONLY LOOK DIFFERENT! D=dexter (means right) and L=laevus (means left) GLUCOSE VERSIONS D-glucose and L-glucose are enantiomers DID YOU KNOW? Many biological molecules contain chiral carbons, creating two possible stereoisomers. Two isomers for each amino acid exist, the D and L forms, but only the L-form is found in living things. Why? It remains a mystery!! Sinistral on left In nature there are numerous examples for the rule that right is rarely the same as left. One example is the tetrahedral structure of the carbon atom. Another is the coiling of a snail's shell. What makes a snail's seashell special, is the fact, that it is asymmetrically coiled to one direction, either left or right. The whorls of a snail's seashell (mollusca) rise to a visible tip the apex. Almost all seashells found have a clockwise rotation if looked at from the top whether found in the northern or southern hemisphere. Scientists have determined it is connected to genetics, and the rare opposite swirl is called sinistral and is considered quite valuable. but is there more to it than that???? Why don’t you do a little shell analysis ? Enough of this fooling around. Back to my discussion of isomers. Sometimes you can have stereoisomers that are not mirror images of each other. These are called DIASTEREOMERS. Diastereomers are not enantiomers. They have different chemical and physical properties. The prefix “en” means “in” and the prefix “di” means “two” These two sugars taste different and are called diastereomers, a type of stereoisomer. Look hard to draw. Well you’ll be drawing these soon! FAMILY STRUCTURE FUNCTIONAL GROUP EXAMPLES Amine Amino Neurotransmitters Carboxylic acid carboxyl vinegar Amino Acid Amino + carboxyl Building block of protein Aldehyde carbonyl Formaldehyde Ketone carbonyl Acetone solvent Ester carbonyl Fragrant odour Ether Alcohol 19th century anesthetic hydroxyl sulphide Sterilizing agent Hydrogen sulphide biomass rotten egg smell Disulphide Thiol two cysteines bonded sulfhydryl Phosphate Phosphodiester Cysteine ATP or G3P phosphate DNA I’m watching you. You better learn somethin g from this chart because this material will be continual ly discussed thoughout the course! Did you know ? Looks like another boring molecule huh? CH2O2 Ant stings are caused by the venom formic acid meth + carboxylic acid The name “formic” comes from the Latin word for ant, formica, referring to its early isolation by the distillation of ant bodies. I am very sceptical about your learning techniques. It’s my guess that you know a lot more about useless information (like High School Musical) than you know about the chart I just showed you. I think it’s time to shake up your brain and set it straight about something that is actually important!! I want you to try to figure out the chemical family shown before the words arrive on the screen. Start now! Ether Amine Disulphide Aldehyde Phosphate Carboxylic acid Ketone Amino acid Ester Lets try some more questions. This time I want you to actually name the chemicals. Butanol Methane Butane Ethanol Propane Methanol Ethane Butanol Looks like you teenagers actually learned something today!! My job is done. End