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Plant Center 8 Getting down to the Root of it all It is time to learn about roots. Complete both worksheets. 1. Read the article Plant Partners. Create a crossword with the following vocabulary: Pollen Nectar Digestive enzymes Carnivorous Flytrap Lure Pollination Pollinator Dispersal 2. To complete worksheet Root Systems/Inside a Root, skim the article provided. This article (Roots) is very high level. You are not expected to read and understand it all. However by looking through it you should be able to find enough information to complete the worksheets. ROOTS Written and Illustrated by Mark Brundrett CSIRO Forestry and Forest Products Index A. B. C. D. Introduction Root Systems Root Growth Root Structural Diversity 1. Root Tips 2. The Epidermis and Root Hairs 3. The Exodermis or Hypodermis 4. Air Spaces 5. The Endodermis and Vascular Tissues 6. Other Structures You are Likely to See 7. The Periderm and Secondary Growth E. Roles of Structural Features F. Terminology A. Introduction It is necessary to be familiar with the structure of nonmycorrhizal roots before examining any changes in root structure due to mycorrhizal associations. Some root structures have the potential to influence mycorrhizal development. Additional information about roots can be found in plant anatomy and plant nutrition texts. The terminology used is explained in the glossary. WHAT ARE ROOTS? Roots are equal in importance to leaves as the life support system for plants and thus for all life in terrestrial ecosystems Roots are: Carbon pumps that feed soil organisms and contribute to soil organic matter Storage organs Chemical factories that may change soil pH, poison competitors, filter out toxins, concentrate rare elements, etc. A sensor network that helps regulate plant growth Absorptive network for limiting soil resources of water and nutrients Mechanical structures that support plants, strengthen soil, construct channels, break rocks, etc. Hydraulic conduits that redistribute soil water and nutrients Habitats for mycorrhizal fungi, rhizosphere and rhizoplane organisms B. Root Systems The recognition of different types of roots is important because these can have different functions. Most plants produce one or more orders of lateral root branches. Different orders of roots vary in their thickness, branching patterns, growth rates, capacity for secondary growth, lifespans, structural features, etc. These variations will influence their capacities to obtain water and nutrients, support mycorrhizal associations and survive adverse conditions. Higher order lateral roots are generally thinner, shorter and don't live as long as those of lower orders. Types of roots: Seminal root - from a seed Adventitious root - from a stem First order lateral root - from a seminal or adventitious root Second order laterals, etc. - from first order laterals, which in turn produce third order laterals, and so on . . . Feeder roots - fine, relatively short-lived roots that acquire nutrients and water in the topsoil Primary roots - from primary growth by the apical meristem Secondary roots - mature, thicker "woody" roots with bark and additional vascular tissue Coarse roots - may live for a long time and have roles in transport and mechanical support Root System Diversity There are differences between plant species in the proportion of relatively fine or coarse roots they produce. Examples of plants with fine or coarse root systems are shown below. The nature of plant's root systems is related to their capacity of to grow without mycorrhizal associations. Plants may also have distinctive root branching patterns, such as the proteoid roots of some nonmycorrhizal plants. It is generally difficult to identify roots with vesicular-arbuscular mycorrhizas by superficial examinations. Species with ectomycorrhizal associations generally have short, swollen lateral roots resulting in a distinctive root system. These characteristic lateral roots can be visible without a microscope and have been used to identify ectomycorrhizal associations. However, there are also some plants with VAM associations that appear to have short roots such as the angiosperm trees Acer and Ulmus, and the Gymnosperm Podocarpus. Thus, it is advisable to examine roots internally to identify association types. Most of the root samples shown below were obtained from natural ecosystems. Some additional samples were obtained from plants growing in glasshouse experiments. The root systems illustrated below were washed from soil, suspended in water and photographed with a dissecting microscope or a camera with a macro lens. Coarse root system of a plant (Arisaema atrorubens) for comparison with the fine root system below. This plant with thick, relatively unbranched roots without long root hairs is considered to be highly dependant on mycorrhizas (Brundrett & Kendrick 1988). (finest gridlines = 1 mm) Deciduous forest plant with fine roots (Geranium robertianum). This species with highly branched roots with long root hairs is considered to have a low requirement for mycorrhizas. (finest gridlines = 1 mm) Ectomycorrhiza l short roots (arrows) of birch (Betula alleghaniensis), an angiosperm tree. The mycorrhizal roots are thicker than other laterals of the same order due to mantle hyphae on the surface and epidermal cell enlargement in the Hartig net. (grid = 1 mm) Pine species with ectomycorrhizal associations have distinctive short, lateral roots with equal (dichotomous) branches. Root system of maple (Acer saccharum). This tree has short lateral roots with constrictions that are called beads (arrows). These result from constrictions when root growth stops and later resumes after suberisation (metacutinisation) of root cap cells. (grid = 1 mm) Cluster roots produced by a nonmycorrhizal plant. This is an Australian a species of Hakea in the Proteaceae family. These localized proliferation of lateral roots are thought to be important sites of nutrient uptake. Roots of Hakea baxterii growing in hydroponic culture. Root clusters are approx. 2 cm long. (Plant material courtesy of Prof Hans Lambers and Greg Cawthray) C. Root Growth Plants must produce new roots to grow larger and to explore new volumes of soil to acquire nutrients. They must also produce roots to replace old roots that have died, were lost to predation, or no longer function well. Young roots with living epidermal cells and root hairs, are often considered to be responsible for most direct nutrient uptake (Marschner 1986). Mycorrhizal formation by both ECM and VAM fungi requires actively growing, or recently formed roots. Young roots can be recognised by observing the distance of xylem and endodermis cell maturation from the root tip. Roots which have stopped growing have mature xylem vessels at their apex and may also have a suberised (metacutinized) root cap. These features are readily apparent after roots have been cleared and stained. Root tissues are produced by cell division in the root apex and cell expansion in subapical regions. Cell division at the apical meristem produces new root cap cells in an outward direction and new root cells in an inward direction. Root tissues progressively mature at greater distances from the root tip and may develop specialized features of their cell walls or cytoplasm. In the diagram below, root cell maturation is represented by increasing color intensity and root tissues by different colors. Most of what we know about plants comes from scientific studies of crops selected from weedy ancestors for rapid growth in highly fertile soils. However, this information may not be relevant to plants in natural ecosystems. Crop plants typically have roots which elongate 1 cm or more in a day (Russell 1977), while roots of plants from in a natural ecosystem may grow 1 mm or less a day (Brundrett & Kendrick 1990). Crop plants tend to be annuals with a relatively "soft" fine roots that only lasts a few weeks or months. Plants in natural ecosystems often produce perennial roots by investing in a coarse well-built root system. There is a trade-off between root lifespan with its associated features and the capacity of roots to acquire nutrients directly. D. Root Structures These images introduce the most important root structures people who work with mycorrhizas are likely to encounter. Most of these images were taken during studies of the roots and mycorrhizas of plants and trees in Canadian forests (Brundrett & Kendrick 1988, Brundrett et al. 1990, 1991). A compound microscope was used to take images of portions of roots. Several different techniques including UV-light induced fluorescence, interference contrast and polarized light microscopy were used to visualize structures. Many images are of relatively thin cross sections of roots made by hand (using a sharp razor blade) processed with different staining and microscopy procedures. Some whole mounts of roots are also shown. Staining procedures were used that are specific for certain structures such as lipids, lignin or suberin. More information on staining procedures is provided elsewhere. 1. Root Tips The growing tip of roots is protected by a root cap consisting of concentric layers of cells surrounding the apical meristem where new root cells are produced. The surface of the root cap of growing roots is often covered by a thick layer of mucilage (Rougier & Chaboud 1985). When roots stop growing the root cap may be protected by suberisation of its outermost cells, as is shown below. These metacutinised root tips would generally not be produced by annual species such as crop plants, but are commonly produced by perennial plants such as trees (Romberger 1963, Brundrett & Kendrick 1988). Lowmagnification microscope of a perennial woodland plant (Smilacina racemosa) with a metacutinised root cap (M) and mycorrhizal fungus hyphae (arrows). Note how suberin in the root cap functions as an extension of the exodermis to completely encase the root for protection during periods of inactivity. Cleared root stained with chlorazol black E. (Magnification = 85x) Longitudinal section of a sugar maple (Acer saccharum) root showing constrictions (beads) caused by root cap metacutinization (arrows) when roots resume growth. A Low magnification view of these roots is shown above. Hand section stained for suberin and lignin (berberine/aniline blue) and viewed with fluorescence microscopy. (Magnification = 215x) 2. The Epidermis and Root Hairs The epidermis is the outmost layer of roots that functions as the interface between plants and the soil. Cell walls of epidermal cells may be lignified, or suberised, or be relatively unmodified. Cells of the epidermis of young roots secrete mucilages (Rougier & Chaboud 1985). Epidermal cells often have narrow projections called root hairs that extend between soil particles. Root hairs may be long or short, dense, spares, or absent altogether (Peterson & Farquhar 1996). Root hairs are considered to help in direct mineral nutrient uptake by increasing the surface are of roots. There is a correlation between the degree of root hair production by plants and their requirement for mycorrhizas. Root of a Fern (Dryopteris intermedia) which has very long and abundant root hairs (arrow). Roots of this plant are sparsely colonized by VAM fungi (10% of root length). Whole mount. (Magnification = 85x) 3. The Exodermis or Hypodermis Cells of the surface layers of roots are often highly specialized. The root cell layer under the epidermis is called a hypodermis if it is relatively unmodified or an exodermis if it has suberised cell walls (Peterson 1988). Suberin is a hydrophobic mixture of lipids and phenolics deposited in the walls of some plant cells (Kolattukudy 1984). In cases where the exodermis is highly suberised, it is often similar in structure to the endodermis of roots, with Casparian bands and suberin lamellae. Many species have a suberised exodermis, which is thought to function as a permeability barrier and to help defend the root from parasites and adverse soil conditions (Perumalla et al. 1990, Brundrett & Kendrick 1988). In some cases, the exodermis has two cell types - long and short cells (called a dimorophic exodermis - Shishkoff 1987). In these roots, the short cells have less suberin in their walls and are used as passage cells by mycorrhizal fungus hyphae. Cross section of an onion (Allium cepa) root showing modified cell walls of exodermal (EX) and epidermal (EP) cells. Exodermal cells have Casparian bands (arrows) in their radial walls and suberin lamellae. View larger file (42 KB) Hand section with a fluorescent stain for suberin (Berberine). (Magnification = 340x) Close-up of the outer cell layers of an ash tree (Fraxinus) root showing suberin lamellae in exodermal cells. Note the passage cell (*) without suberin lamellae. View larger file (53 KB) Hand section with a fluorescent stain for lipids (Fluorol). (Magnification = 340x) Root of Smilacina racemosa (a Canadian forest plant) with a dimorphic exodermis with alternating long (L) and short (S) cells. Casparian bands are seen as wavy lines between cells (thin arrows). A short cell contains hyphae (thick arrow). Surface view of whole root cleared and stained with chlorazol black E. (Bar = 100 um) 4. Air Spaces Plants which are adapted for growth in habitats where soils are often waterlogged typically have large air spaces in their roots (Armstrong 1979). These structures would greatly reduce the habitat available for VAM fungi in these roots. Narrow air channels occur in the roots of many species that grow in moist or dry soil. Intercellular air channels (arrows) in a leek (Allium porrum) root. These channels run continuously from the apex to the base of roots and influence mycorrhizal development if they are present in roots. Whole mount of a living root in water. (Magnification = 140x) Cross-section of a willow (Salix nigra) root from wet soil with four large air spaces (stars) occupying most of the cortex. This root is in an early stage of secondary growth. Polarized light microscopy of an unstained hand section. (Magnification = 85x) 5. The Endodermis and Vascular Tissue Conducting elements, which consist of xylem and phloem, occur within the vascular cylinder (stele) in the centre of roots. The vascular cylinder also contains other less-specialized cells and is enclosed by the endodermis. Both xylem and phloem are made of long narrow cells that are connected by their ends to form continuous networks of "plumbing". These networks interconnect plant organs. Xylem cells are dead at maturity and have thick, strong (lignified) cell walls. They transport water containing minerals and other solutes primarily towards the shoot. Phloem cells are alive at maturity and have thin walls. They transport metabolites, especially sugars resulting from photosynthesis, primarily from the leaves to the rest of the plant. The endodermis is cylinder of cells with suberised walls surrounding the stele and is thought to be a barrier to solute transport in the apoplast (cell wall space) (Clarkson & Robards 1975). The endodermis likely has an important role in regulating exchange processes in mycorrhizal associations as these fungi do not cross into the stele, so are confined to root spaces where the availability of resources is regulated by the endodermis. Cross section of an ash tree Fraxinus sp. root showing intense yellow fluorescence of suberin lamellae in the exodermis (EX) and endodermis (EN). Some endodermal cells are without suberin lamellae (arrows). These are called passage cells. Xylem cells (X), the exodermis (EX) and lipids in VAM fungus hyphae in the cortex can also be seen. Hand section stained with fluorescent for lipids (Fluorol). (Magnification = 230x) Phloem sieve tube elements in a root cross section. This image shows callus on the sieve plates which occur between longitudinally connected phloem cells. Endodermal (En) and xylem cells (X) are also visible. Hand section stained with Aniline blue and viewed with fluorescence (Magnification = 340x) Numerous large xylem vessels (X) in a thick, low-order lateral asparagus root. Other smaller lignified cells are present in the stele, as are phloem sieve tube elements (arrows) and the endodermis (En). Hand section with fluorescent stains for lignin, suberin and phloem (Berberine / Aniline blue). (Magnification = 85x) Endodermal Casparian bands (arrows) and longitudinally connected xylem cells (X). Whole cleared root stained with chlorazol black E. (Bar = 100 um) 6. Other Structures You are Likely to See Roots may contain cells with other types of modified walls or cell inclusions such as crystals or secondary metabolites. Secondary metabolites often provide color to roots and may result in UV-induced auto fluorescence. Many plants, especially coniferous species, accumulate large amounts of dark brown phenolics called tannins. Pigments of other colors are also common. The natural pigmentation of roots can help us distinguish young roots from older roots, which are often darker in color. Accumulation of tannins in epidermal cells (E) visible in a cross section of a Tsuga canadensis (hemlock). Other structures in this ectomycorrhizal root are explained elsewhere. Hand section stained with Chlorazol black E. (Magnification = 540x) Cross section of a cedar (Thuja occidentalis) root with many lignified phi thickenings in cortex cell walls (arrows). Endodermal (EN), xylem (X) and phloem (P) cells are also visible. Hand section with fluorescent stain for suberin and lignin (Berberine/Aniline blue). (Magnification = 340x) Primary root of black walnut (Juglans nigra) with clusters of crystals in many cells (arrow). These are probably calcium oxalate. Polarized light microscopy of a root cross section. (Magnification = 215x) 7. The Periderm and Secondary Growth Some roots are genetically determined to have the capacity to undergo additional radial growth, but other roots do not. Only dicotyledons have this capacity and it is more likely to occur in thicker, lower-order lateral roots, especially if they have a long life span. This radial growth is called secondary growth to distinguish it from primary growth at the root apex. Secondary growth occurs when new meristematic tissue forms in a ring around the vascular cylinder of roots and produces new xylem inwards and new phloem outwards. An outer bark layer made up of layers of suberised cells is also formed. Secondary growth eventually results in the loss of the cortex and epidermis of roots, so these roots cannot form mycorrhizas. Fluorescent staining of suberised periderm (bark) cells (B) encasing a Quercus root after secondary growth. Blue auto fluorescence of lignified xylem (X) and phloem fibre (F) cells are visible. Hand section with fluorescent stain for suberin (fluorol). (Magnification = 215x) Strong refringence of thick cell walls of xylem (X) and phloem fibre (P) cells resulting from secondary growth in a Juglans nigra root. Unstained hand section viewed with polarized light. (Magnification = 215x) E. Roles of structural features As the above illustrations show, the structural diversity of roots is much greater than we might expect. Indeed, it is often possible to identify roots of particular plant species growing in soil by their structural characteristics. Some of the illustrated structures are known to have important roles, but others have not been well studied. Possible roles of suberised walls in roots are outlined in the table below. Roots of plants growing in natural ecosystems are more likely to have outer cell layers with a greater degree of suberisation and/or lignifications than the crop plants we look at more often. Cell wall modifications are thought to provide structural strength to roots, or have defensive roles since they are most highly developed in long-lived roots (Brundrett & Kendrick 1988). The chemical substances roots accumulate may also help to protect them from predators and parasites. Possible Roles of Suberin in Root Surface Layers Protection to allow longer root lifespan Increased resistance to pathogens (physical and chemical barriers to root penetration) Increased drought tolerance (by withstanding greater hydraulic pressure) Limit nutrient and water loss in exudates (permeability barriers) Protect mycorrhizal fungi within roots Regulate growth of mycorrhizal fungi by confining them to certain cells Contribute decomposition resistant substances to soil (humus) after root death An exodermis may restrict the capacity of roots to acquire nutrients directly These structures would increase the production cost of roots Most mycorrhizas are formed by relatively fine high-order lateral roots. Coarse roots of monocotyledons do not have secondary growth, but may not form mycorrhizas if their primary cortex is protected by heavily suberised or lignified cells. The influence of root structural features on mycorrhizal formation is summarized in the table below. These interactions are considered further when mycorrhizal formation is discussed in the following sections. Root Morphology Characteristics which Influence Mycorrhiza Formation Association Anatomical feature Influence on mycorrhizas Cortex air channels hyphal distribution and growth rates, arbuscule distribution Epidermis and hypodermis structure Appressorium position and path of root penetration Hypodermis structure Hartig net type (epidermis or cortex) Root growth rate Efficiency of mycorrhiza formation VAM ECM F. Terminology A glossary of important terms used to describe root structures is provided below. You should refer to a plant anatomy text such as Esau (1977) for more information. Words in italics are defined elsewhere in the list. A. SUBCELLULAR COMPONENTS Cell The basic component of plant organs, consisting of cytoplasm, organelles, vacuoles, etc, bounded by a plasma membrane. Cell wall Structure located outside the plasma membrane of most plant cells. It is primarily made of structural carbohydrates such as cellulose. Cell walls provide mechanical support and space for apoplastic transport of substances. They often contain secondary metabolites, suberin or lignin. Apoplast The cell wall space inside living plants is collectively known as the apoplast. Symplast The space inside living plant cells is collectively known as the symplast. The cytoplasm of adjacent plant cells is often connected by channels through the cell wall (plasmodesmata). Middle lamella A cell wall zone rich in the carbohydrate pectin connecting adjacent cells. Suberin This is a hydrophobic material, containing lipids and phenolics, which impregnates the cell walls of specialized cells (Kolattukudy 1984). Suberin is thought to prevent the passage of water and other materials in the apoplast. Suberin lamellae These are concentric layers of suberin deposited on the inner surface of cell walls and considered to function as barriers to microbial and solute penetration. These are most often found in endodermal or exodermal cells. Casparian band A specialized cell wall structure where suberin is deposited in a radial band. Cells with these structures are arranged in one or two cylinders within roots to form the endodermis and exodermis. These bands are thought to provide a barrier to apoplastic transport of solutes (Esau 1977, Clarkson & Robards 1975, Peterson 1988). Lignin A cell wall type that is impregnated by phenolic compounds. These walls are often considerably thickened to strengthen plant organs. Xylem cells and fibres are typically lignified, but other cells in the stele or cortex can have lignified walls. Phi thickenings These are localized deposits of lignified wall material which form a thickened ring in cortex cell walls (von Guttenberg 1968). Crystals Specialized root cells may contain crystals, along with mucilage, or other substances in their vacuole. Secondary metabolites Plant cells and cell walls often contain secondary metabolites (substances not required for metabolism). Phenolic compounds, including tannins (dark brown pigments) are especially common, but many other chemicals, including alkaloids, terpenes, flavanoids, etc., accumulate in roots of particular plant species. These may color the root and result in uv-induced auto fluorescence. Mucilage High molecular weigh, poorly diffusible substances actively secreted by root epidermal and root cap cells (Rougier & Chaboud 1985). These primarily consist of carbohydrates, but also may contain sloughed cells, enzymes, phenolic compounds, etc. Exudates Root exudates are defined as substance released into the substrate by healthy and intact plant roots (Rovira 1969). These include water, sugars, amino acids, etc. B. CELLAR STRUCTURES Apex The root tip which is covered by a root cap (covering sheath) and secreted mucilage (water soluble polysaccharides which adhere to the root). Apical meristem The zone of dividing cells at the root apex which give rise to new cells in a growing root. Actively growing roots have gradients of maturing tissues away from the apical meristem. Epidermis The outermost layer of cells of the root, in direct contact with the soil. As the soil-root interface, the epidermis is an important site for nutrient uptake and the initiation of mycorrhizal associations. Root hair narrow cylindrical hair-like cell extension of an epidermal cell on the root surface. These may be long or short and provide a dense or sparse root covering. Root hairs increase root contact with the soil and are thought to have a role in water and nutrient uptake. Hypodermis The layer of cells below the epidermis is called a hypodermis if it is not suberised (Peterson 1988). Exodermis The hypodermis is called an exodermis if its cell walls contain a Casparian band and these cells often also have suberin lamellae (Peterson 1988). The exodermis is thought to reduce root permeability (to apoplastic flow) and increase resistance to pathogenic organisms, water loss, etc. Passage cells, short cells Small exodermal cells that remain unsuberised that are surrounded by longer suberised cells (long cells). In many plants, long and short cells alternate in a uniform pattern (called a dimorphic exodermis). Cortex The cell layers occurring between the epidermis and stele. Cortex cells typically have a large central vacuole used to store solutes and are the site of arbuscule formation in VAM associations. Aerenchyma Air spaces within plant organs. These can form between cells, or in the case of large spaces result from cell death. They often form continuous channels along the length or organs such as the root. The main role of aerenchyma is to provide gas exchange to cells in waterlogged soils (Armstrong 1979). Endodermis A cortex cell layer found in all roots, next to the vascular cylinder. The cell walls contain a Casparian band and may develop suberin lamellae (Esau 1965, Clarkson & Robards 1975). Intercellular space The spaces outside the root cells, often in the cortex at the junction of cells. These form longitudinal air channels in many roots, which can be seen by observing whole-living roots mounted in water. Air channels provide conduits for gas transport in waterlogged soils (Armstrong 1979) and influence VAM formation. Stele, vascular cylinder The zone internal to the endodermis which contains specialized tissue responsible for the transport of water and minerals to the shoot (xylem) or organic nutrients, such as photosynthetically fixed carbon, (phloem). Additional layers of xylem and phloem form radially during secondary growth and lateral root initiation also occurs in this zone. Xylem cells develop lignified walls and are dead when mature. Periderm The bark layer formed on the surface of roots or branches by secondary growth. Walls of periderm cells are strengthened by suberin and lignin deposits, which reduce their permeability and susceptibility to microbial activity and adverse soil conditions. Metacutinization This is the modification of dormant root tips by suberization of one or more root cap cell layers (Romberger 1963). Inactive roots of many perennial plants develop a metacutinized apex, which functions as an extension of the exodermis, presumably for protection from adverse soil factors (Brundrett et al. 1990). C. ORGANS AND ZONES Seminal root A root initiated by a germinating seed. Lateral roots Any root which grows from another root. Adventitious roots A root which arises from a stem. First order lateral roots Roots that arise from the seminal root or adventitious roots. Second and third order laterals, etc. Roots which arise from first order laterals which in turn may produce third order laterals, and so on. Higher order laterals may be categorized as feeder roots or fine roots (see below). Primary growth The initial growth of a plant organ caused directly by cell division in its apical meristem and cell enlargement in subapical regions. Secondary growth New growth activity which begins from mature cells in a plant organ. This normally results from radial enlargement of an organ by a new lateral meristem. Secondary roots, woody roots Roots, which develop a periderm and additional vascular tissue due to secondary growth. These would normally have a much longer lifespan than feeder roots and will not contain mycorrhizas if secondary growth has resulted in cortex loss. Coarse roots The "distributive" root system comprised of lower order roots, which is responsible for mechanical support and the transport of substances between fine roots and the shoot. Feeder roots, fine roots The fine, higher order lateral roots that are thought to be responsible for most nutrient and water uptake, as well as mycorrhiza formation. Brown roots, suberised roots, etc. These additional terms are sometimes use to designate old roots, woody roots, or roots with a suberised exodermis. These general terms are misleading and should not be used. Rhizosphere The zone surrounding roots where soil properties and microbial populations are influenced by root exudates. Rhizoplane The surface of the root this zone forms a habitat for organisms which live in contact with the root.