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The Mouse Immunoglobulin Heavy Chain V
The Mouse Immunoglobulin Heavy Chain V

... other element identified in the V-D-J region, the PDQ52 promoter/enhancer, is unlikely to play a role because its deletion does not affect germ line V gene transcription (19) or V to DJ recombination (20). Furthermore, the large V region (2.5 Mb), contains 195 V genes (500 bp) separated by intergeni ...
AnsteadSeniorHonorsThesis
AnsteadSeniorHonorsThesis

... chromosome, which span multiple genes. To measure the results, two genetic markers will be attached to the mutants with deficiencies: curly wings (compared to the wild-type straight wings), located on the second chromosome, and stubble-hair (compared to the bristles found in wild-type), located on t ...
Supporting Information Parfenov et al. 10.1073/pnas.1416074111
Supporting Information Parfenov et al. 10.1073/pnas.1416074111

... P values (adjusted by the Benjamini–Hochberg procedure) less than 0.05 were considered as significantly differentially methylated or expressed. The sites and corresponding statistics for all CpG loci and genes can be found in Dataset S1, Tables S3 and S4. Additionally, we carried out an unsupervised ...
Coordination of replication and transcription along a Drosophila
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... Replication timing data for chromosome 2L was generated by pulse labeling either early or late-replicating sequences from synchronized Kc cells with the nucleotide analog bromodeoxyuridine (BrdU). Kc cells were synchronized by treating the cells with the molting hormone ecdysone, resulting in a G2 a ...
supporting information
supporting information

... PLP epitope clusters: We selected the epitope clusters for PLP to reside within amino acids 38-52, 103-150, 177-203, 218-240 and 264-276: The PLP38-52 contains epitopes preferentially recognized by DR2 and D4 MS T-cells [13], one of the H-2d strains, BALB/cPt, is also moderately susceptible to EAE ...
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... same mutation by using a single, large culture, as described in Methods. The numerous colonies isolated from this culture on succinate medium containing ally1 alcohol were re-isolated on the same medium. Five per cent retained their ability to grow on methanol medium. Among 1400 colonies unable to g ...
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Slide 1

... • Goal is to segment the genome into sub-classes. In each case, the tools identify certain data properties that subsets of the genome. Based on the groupings, the presence of known features (e.g. transcription start regions) is scored to suggest the functional meaning of the classes established. ...
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... controlling sister chromatid adhesion and driving chromosome movement. Despite their importance, centromeres remain poorly understood, especially in multicellular eukaryotes with large chromosomes. One of the themes developing from work on centromeres in humans and Drosophila is that the centromeric ...
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Creating conditional dual fluorescence labelled transgenic animals

... In addition to messenger RNA that encodes proteins, non-coding RNAs, including microRNA (miRNA) and long non-coding RNA (lncRNA) have been shown to be involved in gene regulation at post-transcriptional and translational levels. For example, microRNAs, about 22 nucleotide long, are among the largest ...
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... c. 5' TCA 3'. d. 3' ACU 5'. e. either UCA or TCA, depending on wobble in the first base. ...
Separation of DNA Restriction Fragments by Ion
Separation of DNA Restriction Fragments by Ion

... plays a central role in DNA research. However, when used for preparative purposes electrophoresis has two particularly serious drawbacks: (A) Extraction of the purified material out of the gel is tedious and difficult to accomplish with high yields (1). (B) The purified DNA is often contaminated wit ...
Charge Transport in DNA - Insights from
Charge Transport in DNA - Insights from

... DNA molecules between the electrodes were breaking. The fundamental features of CT in DNA have been described as well. First, the exponential dependence of CT efficiency on the length of the DNA oligomers. Second, the role of experimental setup that is both crucial and challenging to characterize. In ...
The coiled-coil of the human Rad50 DNA repair protein contains
The coiled-coil of the human Rad50 DNA repair protein contains

... For polymers like DNA, this method yields an average persistence length that is in good agreement with values obtained by other techniques (8). This method has been modified to describe known segments of different persistence length (9). Another method for the determination of overall flexibility of ...
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Epigenomics

Epigenomics is the study of the complete set of epigenetic modifications on the genetic material of a cell, known as the epigenome. The field is analogous to genomics and proteomics, which are the study of the genome and proteome of a cell (Russell 2010 p. 217 & 230). Epigenetic modifications are reversible modifications on a cell’s DNA or histones that affect gene expression without altering the DNA sequence (Russell 2010 p. 475). Two of the most characterized epigenetic modifications are DNA methylation and histone modification. Epigenetic modifications play an important role in gene expression and regulation, and are involved in numerous cellular processes such as in differentiation/development and tumorigenesis (Russell 2010 p. 597). The study of epigenetics on a global level has been made possible only recently through the adaptation of genomic high-throughput assays (Laird 2010) and.
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