XSL Formatter - H:\XML
... instructions are provided for several common biological research problems that can be addressed by exploiting the whole-genome and positional perspectives of Map Viewer. Please be aware that the examples in these tutorials may return different results when you execute them, because the underlying da ...
... instructions are provided for several common biological research problems that can be addressed by exploiting the whole-genome and positional perspectives of Map Viewer. Please be aware that the examples in these tutorials may return different results when you execute them, because the underlying da ...
The Chloroplast trnT–trnF Region in the Seed Plant
... gymnosperm lineage Gnetales (Gnetum, Welwitschia, and Ephedra), with especially dense sampling in Gnetum for which we sequenced 41 accessions, representing most of the 25–35 species. The trnL intron has a conserved secondary structure and contains elements that are homologous across land plants, whi ...
... gymnosperm lineage Gnetales (Gnetum, Welwitschia, and Ephedra), with especially dense sampling in Gnetum for which we sequenced 41 accessions, representing most of the 25–35 species. The trnL intron has a conserved secondary structure and contains elements that are homologous across land plants, whi ...
Serine/Arginine-rich proteins Physcomitrella patens Andreas Ring
... Serine/Arginine-rich proteins (SR-proteins) have been well characterized in metazoans and in the flowering plant Arabidopsis thaliana. But so far no attempts on characterizing SRproteins in the moss Physcomitrella patens have been done. SR-proteins are a conserved family of splicing regulators essen ...
... Serine/Arginine-rich proteins (SR-proteins) have been well characterized in metazoans and in the flowering plant Arabidopsis thaliana. But so far no attempts on characterizing SRproteins in the moss Physcomitrella patens have been done. SR-proteins are a conserved family of splicing regulators essen ...
Co-dominant SCAR marker for detection of the begomovirus
... one of 3 nt, and one of 120 nt). The sequence for the T0302 marker from S. habrochaites LA0386 (909 bp, EU046611) was identical to the sequence from H24. The sequence for the T0302 marker (789 bp, EU046612) was also obtained for another accession, S. chilense LA2779, that has been used as a source ...
... one of 3 nt, and one of 120 nt). The sequence for the T0302 marker from S. habrochaites LA0386 (909 bp, EU046611) was identical to the sequence from H24. The sequence for the T0302 marker (789 bp, EU046612) was also obtained for another accession, S. chilense LA2779, that has been used as a source ...
Eds., N. Hamamura, S. Suzuki, S. Mendo, C. M. Barroso,... © by TERRAPUB, 2010.
... al., 2003). The mer operons, with some genetic variation in structure, are constituted by genes encoded the functional proteins for regulation (merR), transport (merT, merP) and reduction (merA). In some cases, known as broadspectrum mercury resistance, additional merB genes are required to confer r ...
... al., 2003). The mer operons, with some genetic variation in structure, are constituted by genes encoded the functional proteins for regulation (merR), transport (merT, merP) and reduction (merA). In some cases, known as broadspectrum mercury resistance, additional merB genes are required to confer r ...
Visual gene developer: a fully programmable bioinformatics
... genes each and compared actual expression levels in E. coli [7]. They identified the most important 10 codons encoding a subset of amino acids that strongly accounted for expression level. However, they couldn’t find a correlation between mRNA folding energy and expression probably due to weak mRNA ...
... genes each and compared actual expression levels in E. coli [7]. They identified the most important 10 codons encoding a subset of amino acids that strongly accounted for expression level. However, they couldn’t find a correlation between mRNA folding energy and expression probably due to weak mRNA ...
Drosophila windpipe codes for a leucine
... al., 2000) and codes for a transmembrane leucine-rich repeat (LRR) family member (Fig. 1A). The predicted WDP protein has 677 residues with a potential signal peptide cleavage sequence located between amino acids 20 and 21 (ANA-TP). Based on hydropathy analysis, residues 451– 472 form a transmembran ...
... al., 2000) and codes for a transmembrane leucine-rich repeat (LRR) family member (Fig. 1A). The predicted WDP protein has 677 residues with a potential signal peptide cleavage sequence located between amino acids 20 and 21 (ANA-TP). Based on hydropathy analysis, residues 451– 472 form a transmembran ...
Chapter 12
... Fig. 12.8: (a) Conservation of the sequence of the patched gene in the vinegar fly, Drosophila melanogaster. (b) The epidermal structures found in a wild-type (+) Drosophila embryo. (c) Mutation of the patched gene disrupts formation of the epidermis in the Drosophila embryo. (d–e) Mutation of the ...
... Fig. 12.8: (a) Conservation of the sequence of the patched gene in the vinegar fly, Drosophila melanogaster. (b) The epidermal structures found in a wild-type (+) Drosophila embryo. (c) Mutation of the patched gene disrupts formation of the epidermis in the Drosophila embryo. (d–e) Mutation of the ...
The type 4 pilin of Moraxella nonliquefaciens exhibits
... residue of the mature protein (McKern et al., 1983; Taylor et al., 1987). The amino acid sequence of the amino-terminal end of the pili in M . nonliquefaciens NCTC 7784 was determined by Frnrholm & Sletten (1977). Comparison of the amino acid sequence of type 4 pilin from different species to the or ...
... residue of the mature protein (McKern et al., 1983; Taylor et al., 1987). The amino acid sequence of the amino-terminal end of the pili in M . nonliquefaciens NCTC 7784 was determined by Frnrholm & Sletten (1977). Comparison of the amino acid sequence of type 4 pilin from different species to the or ...
Education®
... 1. Anticodon – a sequence of three (3) nucleotides found at a specific site on a transfer RNA molecule (tRNA) to complement a specific messenger RNA (mRNA) codon. The anticodon corresponds to a specific amino acid that is attached to the tRNA for transfer to a protein by that tRNA molecul ...
... 1. Anticodon – a sequence of three (3) nucleotides found at a specific site on a transfer RNA molecule (tRNA) to complement a specific messenger RNA (mRNA) codon. The anticodon corresponds to a specific amino acid that is attached to the tRNA for transfer to a protein by that tRNA molecul ...
Statistical analysis of simple repeats in the human genome
... Experiments on kinetics of DNA denaturation and renaturation and the analysis of DNA sequences have revealed that most of our genome is populated by DNA repeats of different length, number and degree of dispersion [1]. Long repeats in few copies are usually orthologous genes, which may contain hidde ...
... Experiments on kinetics of DNA denaturation and renaturation and the analysis of DNA sequences have revealed that most of our genome is populated by DNA repeats of different length, number and degree of dispersion [1]. Long repeats in few copies are usually orthologous genes, which may contain hidde ...
The importance of alternative splicing in the drug discovery process
... one gene can produce several, sometimes functionally distinct, proteins (recently reviewed in [4,5]). The combinatorial nature of alternative splicing enables the genome to produce numerous transcripts out of a relatively small number of genes. One of the most extreme examples is the Drosophila Down ...
... one gene can produce several, sometimes functionally distinct, proteins (recently reviewed in [4,5]). The combinatorial nature of alternative splicing enables the genome to produce numerous transcripts out of a relatively small number of genes. One of the most extreme examples is the Drosophila Down ...
Specific oligonucleotide primers for detection of endoglucanase
... EN1R, were chosen that were predicted to specifically amplify a 1,311 bpDNA fragment of the B. Subtilis, G. stearothermophilus and P. campinasensis. The Genbank database (NCBI) search for complimentary sequences revealed 100 % homology between the primers and the gene encodes endo-b-1,4-glucanase of ...
... EN1R, were chosen that were predicted to specifically amplify a 1,311 bpDNA fragment of the B. Subtilis, G. stearothermophilus and P. campinasensis. The Genbank database (NCBI) search for complimentary sequences revealed 100 % homology between the primers and the gene encodes endo-b-1,4-glucanase of ...
Getting Started
... 2. What does it require to set up (computer usage/online) 3. What was the source for the GO (primary or secondary) and when was it last updated? 4. Does it report the GO evidence codes (and is IEA ...
... 2. What does it require to set up (computer usage/online) 3. What was the source for the GO (primary or secondary) and when was it last updated? 4. Does it report the GO evidence codes (and is IEA ...
CHARACTERIZATION OF MOCR, A GNTR TRANSCRIPTIONAL
... 1. Rise soybean crop value in the U.S. from 1985 – 2010, USDA (2011). ..................................... 1 2. Satellite image depicting effects of eutrophication of the northern Gulf of Mexico/Mississippi Delta, showing hypoxic coastal water, January 2003. (B) Monthly U.S. prices of natural gas a ...
... 1. Rise soybean crop value in the U.S. from 1985 – 2010, USDA (2011). ..................................... 1 2. Satellite image depicting effects of eutrophication of the northern Gulf of Mexico/Mississippi Delta, showing hypoxic coastal water, January 2003. (B) Monthly U.S. prices of natural gas a ...
Author`s personal copy
... results from molecular studies are also likely to be prone to bias, the fraction of the microbial community that can be taken in culture is known to be very small, thus leaving a large part of the community diversity undetected. Recently, however, with the development of advanced cultivation techniq ...
... results from molecular studies are also likely to be prone to bias, the fraction of the microbial community that can be taken in culture is known to be very small, thus leaving a large part of the community diversity undetected. Recently, however, with the development of advanced cultivation techniq ...
Chapter 8 Human Chromosomes
... known as a karyotype (“nucleus features”). By conven- 1, 5, and 21, respectively. Humans do not have any telotion we list (i) the total number of chromosomes, (ii) centric chromosomes, those with the centromere at one the sex chromosomes, and (iii) any abnormalities. The end, but mice and some other ...
... known as a karyotype (“nucleus features”). By conven- 1, 5, and 21, respectively. Humans do not have any telotion we list (i) the total number of chromosomes, (ii) centric chromosomes, those with the centromere at one the sex chromosomes, and (iii) any abnormalities. The end, but mice and some other ...
A novel mutation of the Keratin 12 gene responsible for a severe
... form of Meesmann’s corneal dystrophy. Methods: A family with clinically identified Meesmann’s corneal dystrophy was recruited and studied. Electron microscopy was performed on scrapings of corneal epithelial cells from the proband. Mutations in the KRT12 gene were sought using direct genomic sequenc ...
... form of Meesmann’s corneal dystrophy. Methods: A family with clinically identified Meesmann’s corneal dystrophy was recruited and studied. Electron microscopy was performed on scrapings of corneal epithelial cells from the proband. Mutations in the KRT12 gene were sought using direct genomic sequenc ...
Cloning and characterization of dispersed repetitive DNA derived
... DOP-61 and DOP-47 show up to 63% identity with polyproteins of different Ty3-gypsy-like long terminal repeat (LTR) retroelements, especially with those that are specifically located in cereal centromeres (Fig. 2A). In contrast, the deduced amino acid sequences of DOP-60 and DOP-8 were discontinuous ...
... DOP-61 and DOP-47 show up to 63% identity with polyproteins of different Ty3-gypsy-like long terminal repeat (LTR) retroelements, especially with those that are specifically located in cereal centromeres (Fig. 2A). In contrast, the deduced amino acid sequences of DOP-60 and DOP-8 were discontinuous ...
Ensembl Compara Perl API
... used to compare closely related pair of species BlastZ-raw -> BlastZ-chain -> BlastZ-net ...
... used to compare closely related pair of species BlastZ-raw -> BlastZ-chain -> BlastZ-net ...
Catellibacterium aquatile sp. nov., isolated from fresh water, and
... (Boldareva et al., 2008). Their wide distribution and metabolic diversity (such as heterotrophic, phototrophic and chemically autotrophic metabolism) suggest that members of this clade may play important roles in various ecosystems, especially aquatic environments. In a survey of the bacterial diver ...
... (Boldareva et al., 2008). Their wide distribution and metabolic diversity (such as heterotrophic, phototrophic and chemically autotrophic metabolism) suggest that members of this clade may play important roles in various ecosystems, especially aquatic environments. In a survey of the bacterial diver ...
High background radiation areas of Ramsar in Iran
... (Sohrabi, 1998; Ghiassi-Nejad et al., 2002, 2003). Radioactivity is due to 226Ra and its decay products which have been brought up to the earth’s surface by the water of more than 9 hot springs (Aghamiri et al., 2000; Ghiassi-Nejad et al., 2003). The mean effective dose resulting from 226Ra due to c ...
... (Sohrabi, 1998; Ghiassi-Nejad et al., 2002, 2003). Radioactivity is due to 226Ra and its decay products which have been brought up to the earth’s surface by the water of more than 9 hot springs (Aghamiri et al., 2000; Ghiassi-Nejad et al., 2003). The mean effective dose resulting from 226Ra due to c ...
c-fos Protein Can Induce Cellular Transformation: A Novel
... 1) only chimeric molecules utilizing the Nco I site could be constructed. However, to be consistent we retained the three-letter code to describe these molecules as if there was a Sal I cleavage site. As previously noted, HHH did not transform cells. HVV, however, did transform cells, showing that t ...
... 1) only chimeric molecules utilizing the Nco I site could be constructed. However, to be consistent we retained the three-letter code to describe these molecules as if there was a Sal I cleavage site. As previously noted, HHH did not transform cells. HVV, however, did transform cells, showing that t ...
Phylogenetic Motif Detection by Expectation
... upstream of groups of characterized target genes. We compare our method to traditional motif finding on only conserved regions. An implementation will be made available http://rana.lbl.gov. ...
... upstream of groups of characterized target genes. We compare our method to traditional motif finding on only conserved regions. An implementation will be made available http://rana.lbl.gov. ...