Nucleic Acids Research, 32: D489-D492 (2004).
... within genes; the rest lie within intergenic regions. There are 28 049 transcripts in AluGene, of which 17 781 (63%) contain at least one Alu element. Within 1 kb regions upstream of transcription initiation sites, there are 9212 Alus. These Alus are found in locations that potentially may affect ex ...
... within genes; the rest lie within intergenic regions. There are 28 049 transcripts in AluGene, of which 17 781 (63%) contain at least one Alu element. Within 1 kb regions upstream of transcription initiation sites, there are 9212 Alus. These Alus are found in locations that potentially may affect ex ...
Two distinct teleost hepatocyte nuclear factor 1 genes, hnf1a/tcf1
... muscle and gill. The zygotic expression of zebrafish hnf1a was obviously detected at onset of gastrulation (50% epiboly) and strongly detected from the end of gastrulation (90% epiboly, 10 hpf). Little expression of zebrafish hnf1a was detected from 1- to 1000-cell stage. Zebrafish hnf1b was materna ...
... muscle and gill. The zygotic expression of zebrafish hnf1a was obviously detected at onset of gastrulation (50% epiboly) and strongly detected from the end of gastrulation (90% epiboly, 10 hpf). Little expression of zebrafish hnf1a was detected from 1- to 1000-cell stage. Zebrafish hnf1b was materna ...
Neonatal Hyperbilirubinemia and Organic Anion Transporting
... serum bilirubin, such as those that affect the molecular structure of 50 -diphosphate glucuronosyltransferase (UGT) and those that result in glucose-6-phosphate dehydrogenase (G6PD) deficiency.5–9 G6PD deficiency is the most common genetic defect around the world, including Turkey.4 However, few stu ...
... serum bilirubin, such as those that affect the molecular structure of 50 -diphosphate glucuronosyltransferase (UGT) and those that result in glucose-6-phosphate dehydrogenase (G6PD) deficiency.5–9 G6PD deficiency is the most common genetic defect around the world, including Turkey.4 However, few stu ...
Physical map of the aromatic amine and m-toluate
... present in Pseudomonasputida UCC22, a derivativeof P.putida mt-2. The plasmid is 79 1kbp in size and can be divided into a restriction-site-deficient region of 51 f 1 kbp and a restriction-site-profuse region of 28 kbp which begins and ends with directly repeating sequences of at least 2 kbp in leng ...
... present in Pseudomonasputida UCC22, a derivativeof P.putida mt-2. The plasmid is 79 1kbp in size and can be divided into a restriction-site-deficient region of 51 f 1 kbp and a restriction-site-profuse region of 28 kbp which begins and ends with directly repeating sequences of at least 2 kbp in leng ...
Speaker: Dr. Arnob Dutta Title: Multiple mechanisms to regulate the
... Title: Multiple mechanisms to regulate the Swi/Snf chromatin remodeler Abstract: The Swi/Snf chromatin remodeling complex functions to alter nucleosome positions by either sliding nucleosomes on DNA or the eviction of histones. The presence of histone acetylation and activator dependent recruitment ...
... Title: Multiple mechanisms to regulate the Swi/Snf chromatin remodeler Abstract: The Swi/Snf chromatin remodeling complex functions to alter nucleosome positions by either sliding nucleosomes on DNA or the eviction of histones. The presence of histone acetylation and activator dependent recruitment ...
QSTAR - Institute of Bioinformatics
... multiple conditions can only be detected if transcript is DE ...
... multiple conditions can only be detected if transcript is DE ...
Document
... Similarly, in a generic tree one does see a relationship between the cellular component terms but it is NOT clear how they are related. This becomes important because if a user does not know about all the detail components of an organelle he/she will not be able to search/find all the appropriate an ...
... Similarly, in a generic tree one does see a relationship between the cellular component terms but it is NOT clear how they are related. This becomes important because if a user does not know about all the detail components of an organelle he/she will not be able to search/find all the appropriate an ...
POCUS: mining genomic sequence annotation to predict disease
... The disease genes for each of the 29 diseases were used to produce artificial locus sets containing the disease genes and many flanking genes, and each set was analyzed using POCUS to find genes possessing IDs over-represented among two or more loci. The three locus sizes tested were 100, 500 and 1, ...
... The disease genes for each of the 29 diseases were used to produce artificial locus sets containing the disease genes and many flanking genes, and each set was analyzed using POCUS to find genes possessing IDs over-represented among two or more loci. The three locus sizes tested were 100, 500 and 1, ...
pdf
... gene probe analysis and direct polymerase chain reaction (PCR) ampli¢cation with gene-speci¢c primers [5^12]. More than 200 complete or partial sequences of nitrite reductase genes from pure cultures and environmental samples have already been deposited in the GenBank database. Removal of halogenate ...
... gene probe analysis and direct polymerase chain reaction (PCR) ampli¢cation with gene-speci¢c primers [5^12]. More than 200 complete or partial sequences of nitrite reductase genes from pure cultures and environmental samples have already been deposited in the GenBank database. Removal of halogenate ...
Drosophila Muller F Elements Maintain a Distinct Set of Genomic
... comparative analyses of the repeat and gene characteristics of the F element in four Drosophila species. The Drosophila 12 Genomes Consortium (Drosophila 12 Genomes Consortium et al. 2007) and the modENCODE project (Kharchenko et al. 2011) have produced a large collection of genomic datasets for D. ...
... comparative analyses of the repeat and gene characteristics of the F element in four Drosophila species. The Drosophila 12 Genomes Consortium (Drosophila 12 Genomes Consortium et al. 2007) and the modENCODE project (Kharchenko et al. 2011) have produced a large collection of genomic datasets for D. ...
JunctionSeq Package User Manual
... tool, DEXSeq, which is designed to detect differential usage of exonic sub-regions in RNA-Seq data. Tests for differential usage can be used as a proxy for detecting alternative isoform regulation (AIR). Although many tools already exist to detect alternative isoform regulation, the results of these ...
... tool, DEXSeq, which is designed to detect differential usage of exonic sub-regions in RNA-Seq data. Tests for differential usage can be used as a proxy for detecting alternative isoform regulation (AIR). Although many tools already exist to detect alternative isoform regulation, the results of these ...
- Cal State LA - Instructional Web Server
... genes (within 20kb) Perform multiple sequence alignment on Alu sequences Identify motifs preferentially conserved around highly expressed genes (these motifs could help the genes be highly expressed) ...
... genes (within 20kb) Perform multiple sequence alignment on Alu sequences Identify motifs preferentially conserved around highly expressed genes (these motifs could help the genes be highly expressed) ...
E.coli
... a (translationally biased) organism Can we determine genes belonging to minimal gene sets ? ...
... a (translationally biased) organism Can we determine genes belonging to minimal gene sets ? ...
Word - NIEHS SNPs Program
... Display Type’ window emerges, click the ‘open graphical display of linkage disequilibrium.’ What we have done is to get rid of all the low LD matches, but it is still not clear which sites are in LD with others in the gene. For example, if I asked you to determine which sites are in high LD (r2 > 0. ...
... Display Type’ window emerges, click the ‘open graphical display of linkage disequilibrium.’ What we have done is to get rid of all the low LD matches, but it is still not clear which sites are in LD with others in the gene. For example, if I asked you to determine which sites are in high LD (r2 > 0. ...
Estimating complexity and adaptation in the embryo: a
... development. For many developmental genes, the spatio-temporal expression dynamics have been thoroughly described. It is not clear however, if the global dynamics are similar, or if there are dierences between types of genes or between species. Adaptive reasons have been also said to be the cause f ...
... development. For many developmental genes, the spatio-temporal expression dynamics have been thoroughly described. It is not clear however, if the global dynamics are similar, or if there are dierences between types of genes or between species. Adaptive reasons have been also said to be the cause f ...
Protocadherin-1: epithelial barrier dysfunction in asthma and eczema Grissel Faura Tellez
... the preferential occurrence of specific combinations of SNPs in the population, due to their co-inheritance as a result of their close physical proximity. In a recent study in a German population, TONCHEVA et al. [6] investigated the possibility that associations of PCDH1 with asthma were caused by ...
... the preferential occurrence of specific combinations of SNPs in the population, due to their co-inheritance as a result of their close physical proximity. In a recent study in a German population, TONCHEVA et al. [6] investigated the possibility that associations of PCDH1 with asthma were caused by ...
Genome Biology - Institute for Applied Ecology
... chick embryos at 14 days of incubation, based on microarray analysis (see [11]). In each tissue, the male:female (M:F) ratio of mRNA expression was calculated for each gene. We have previously reported that Z genes are expressed at higher M:F ratios than autosomal genes, and that some Z genes appear ...
... chick embryos at 14 days of incubation, based on microarray analysis (see [11]). In each tissue, the male:female (M:F) ratio of mRNA expression was calculated for each gene. We have previously reported that Z genes are expressed at higher M:F ratios than autosomal genes, and that some Z genes appear ...
Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-
... activities of the cry toxins, B. thuringiensis has been used widely as a biopesticide, and there is a great deal of interest to understand further its pathogenic properties and how host resistance may evolve. Strains of B. thuringiensis vary in their amenability to genetic manipulation, and acrystal ...
... activities of the cry toxins, B. thuringiensis has been used widely as a biopesticide, and there is a great deal of interest to understand further its pathogenic properties and how host resistance may evolve. Strains of B. thuringiensis vary in their amenability to genetic manipulation, and acrystal ...
Genetic polymorphisms of vein wall remodeling in chronic venous
... toward CVI and varicose veins,16 the exact genes are still unknown— though they likely involve quantitative or qualitative defects in proteins associated with the vein wall, ECM, and cell organization/ regulation.16 These polymorphisms, in turn, could plausibly increase the likelihood of CVD, includ ...
... toward CVI and varicose veins,16 the exact genes are still unknown— though they likely involve quantitative or qualitative defects in proteins associated with the vein wall, ECM, and cell organization/ regulation.16 These polymorphisms, in turn, could plausibly increase the likelihood of CVD, includ ...
Comparative Genomics of Microbes
... • Tandem repeats: regions of repeated DNA in immediate succession but with different copy number in different genomes. – A repeat can occur 2.5 times October 2K5 ...
... • Tandem repeats: regions of repeated DNA in immediate succession but with different copy number in different genomes. – A repeat can occur 2.5 times October 2K5 ...
study
... variants (SNVs) for each gene. This allowed us to quantify the selection pressure and its direction by dDNS/dS and dStop/dS ratios. Similar to dN/dS, these ratios are selection indicators [42, 43]. Ratios close to 1 indicate neutral selection, lower ratios indicate purifying (negative) selection, an ...
... variants (SNVs) for each gene. This allowed us to quantify the selection pressure and its direction by dDNS/dS and dStop/dS ratios. Similar to dN/dS, these ratios are selection indicators [42, 43]. Ratios close to 1 indicate neutral selection, lower ratios indicate purifying (negative) selection, an ...
Mendelian Genetics and Chromosomes PPT
... That their respective loci are in close proximity on the same chromosome ...
... That their respective loci are in close proximity on the same chromosome ...
PDF
... Genetic resistance to rice BB has been extensively used by rice breeders to combat this disease and breakdown of resistance in varieties having a single resistance gene has been reported in rice (Mew et al., 1992; Nelson et al., 1994; George et al., 1997) after 2 or 3 years as a result of shifts in ...
... Genetic resistance to rice BB has been extensively used by rice breeders to combat this disease and breakdown of resistance in varieties having a single resistance gene has been reported in rice (Mew et al., 1992; Nelson et al., 1994; George et al., 1997) after 2 or 3 years as a result of shifts in ...