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P3- Biochemical Processes
P3- Biochemical Processes

... The nature of biochemical processes within cells  Catabolic and anabolic reactions – reactions releasing or requiring energy  Role of enzymes as protein catalysts  The role of ATP and ADP in energy ...
Acid Base Disorders in Intensive Care - e-SAFE
Acid Base Disorders in Intensive Care - e-SAFE

... pyruvate accumulates and lactate is produced. We know oxygen delivery is a product of cardiac output and blood oxygen content, but in lactic acidosis low cardiac output is invariably the most important consideration. Oxygen content is rarely low enough to create a lactic acidosis in isolation – the ...
Using gene networks to drug target identification
Using gene networks to drug target identification

... pathways and potential drug targets. In order to find proper candidate target genes, one needs biological knowledge of the pathways underlying the disease process. So the study of biochemical pathways is the focus of numerous researchers. However, owing to the complexity of pathway structures, many ...
Metabolism of Selenoamino Acids and Contribution of Selenium
Metabolism of Selenoamino Acids and Contribution of Selenium

... Selenomethionine19) : SeMet will be metabolized to CySeH in a similar pathway like methionine,17) and CySeH is decomposed to H2Se by selenocysteine β-lyase. H2Se is further methylated to MMSe, DMSe and TMSe. It was found that TMSe is produced quickly in mouse liver after oral administration of SeMet ...
TCA
TCA

... weak, dizzy, and sick to her stomach. She would drink some water, but she lost her Nalgene bottle last week somewhere, and the walk to the dining hall is just way too ...
Practical part
Practical part

... enzymatic products, their formation in association with muscular activity and alcohol fermentation. Some of his investigations have become classic works in biochemistry. They concern the rapid autolytic increase of ammonium content in extravasate blood and "postmortem" or traumatic ammoniogenesis in ...
Ancestral lipid biosynthesis and early membrane evolution
Ancestral lipid biosynthesis and early membrane evolution

... The key dehydrogenase enzymes that synthesize G1P and G3P are the archaeal G1PDH and the bacterial/ eukaryotic G3PDH enzymes, respectively (Box 1). The genes encoding these two enzymes are not homologous, and the proteins do not show structural similarity other than a small conserved NADC-binding mo ...
WebGestaltR
WebGestaltR

... and do not need to upload the reference set. All existing platform supported in the WebGestaltR can be found by the function listReferenceSet.If referenceGeneFile and refereneceGene are emphNULL, WebGestaltR will use the referenceSet as the reference gene set. Otherwise, WebGestaltR will use the us ...
Chapter 7: Cellular Pathways That Harvest Chemical Energy
Chapter 7: Cellular Pathways That Harvest Chemical Energy

... • Catabolic pathways feed into the respiratory pathways. Polysaccharides are broken down into glucose, which enters glycolysis. Glycerol from fats also enters glycolysis, and acetyl CoA from fatty acid degradation enters the citric acid cycle. Proteins enter glycolysis and the citric acid cycle via ...
Genomescale models of metabolism and gene expression extend
Genomescale models of metabolism and gene expression extend

... prosthetic group synthesis and utilization in the ME-Model. Specifically, for a protein complex to be functional in the MEModel it has to contain the embedded prosthetic groups required for function; while this change in model structure results in some false predictions of essentiality compared with ...
Enzyme Activity
Enzyme Activity

PowerPoint Template - HIV-NAT
PowerPoint Template - HIV-NAT

... • Fibrate if TG>400 mg/dl • Lowest dose statin (pravastatin or atorvastatin) if TC > 200 mg/dl (approve in > 8 yo) Need to work with the family and psychological support ...
Acid-Base Management for Open-Heart Surgery
Acid-Base Management for Open-Heart Surgery

... creating the need for more definitive terms to describe fully the acid-base status. Hence acidosis or alkalosis may be mixed, uncompensated, partially compensated, or fully compensated. If it is the last, the choice as to whether it be described as fully compensated acidosis or fully compensated alk ...
Disruption of Glucocorticoid and Mineralocorticoid Receptor
Disruption of Glucocorticoid and Mineralocorticoid Receptor

... none of the identified compounds was of high potency. It cannot be excluded at this point that some of the identified chemicals have more pronounced effects under certain conditions such as oxidative stress or upon preincubation for a prolonged time. Clearly, a more extensive screening will be neces ...
Arabidopsis thaliana Arabidopsis thaliana
Arabidopsis thaliana Arabidopsis thaliana

... have related genes in other eukaryotic genomes, reflecting the independent evolution of many plant transcription factors. In contrast, 48 ± 60% of genes involved in protein synthesis have counterparts in the other eukaryotic genomes, reflecting highly conserved gene functions. The relatively high pr ...
Nucleotide Synthesis Nucleotides Origin of Atoms Nucleotide
Nucleotide Synthesis Nucleotides Origin of Atoms Nucleotide

... • thymine nucleotides are found in DNA • uracil nucleotides are found in RNA • rapidly dividing cells must replicate DNA rapidly and require rapid production of thymine nucleotides • by preventing formation of thymine nucleotides, rapidly dividing cells are ...
Slide 1
Slide 1

... Activation nrg (Ae)nrg needed to get to the transistion state Enzymes arefrom biological reactant nrgthat level catalysts ...
Cellular Respiration Chapter 8 Outline Glycolysis Transition
Cellular Respiration Chapter 8 Outline Glycolysis Transition

... cytoplasm to two molecules of pyruvate. During transition reaction, pyruvate is oxidized, NADH is formed, and waste carbon dioxide is removed. Citric acid cycle results in NADH and FADH2, release of carbon dioxide, and production of additional ATP. Electron transport chain produces 32 or 34 molecule ...
No Slide Title
No Slide Title

... of frames and their associated slots, values, facets, and annotations  AKA: Database, PGDB  Can ...
Introduction - MRC Laboratory of Molecular Biology
Introduction - MRC Laboratory of Molecular Biology

... • Flux through the PPP is circadian and is distinguishable from glycolytic flux • This provides a platform from which to further investigate whether the PPP and the related cellular redox state might play a more general role in cellular circadian timekeeping • That the systems of the PPP and ROS det ...
Genomic Gene Clustering Analysis of Pathways
Genomic Gene Clustering Analysis of Pathways

Metabolism & Enzymes - San Juan Unified School District
Metabolism & Enzymes - San Juan Unified School District

... analogous to this system: Glucose is broken down in a series of exergonic reactions that power the work of the cell. The product of each reaction becomes the reactant for the next, so no reaction reaches equilibrium. ...
Introduction to Enzymes - Worthington Biochemical
Introduction to Enzymes - Worthington Biochemical

... Combining the two reactions gives: ...
Hong - Gene Ontology Consortium
Hong - Gene Ontology Consortium

... Links to SGD tools and other databases ...
Metabolic Impairment in Heart Failure
Metabolic Impairment in Heart Failure

... (24). Impaired regulation via the inducible coactivator, ...
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Metabolic network modelling



Metabolic network reconstruction and simulation allows for an in-depth insight into the molecular mechanisms of a particular organism. In particular, these models correlate the genome with molecular physiology. A reconstruction breaks down metabolic pathways (such as glycolysis and the Citric acid cycle) into their respective reactions and enzymes, and analyzes them within the perspective of the entire network. In simplified terms, a reconstruction collects all of the relevant metabolic information of an organism and compiles it in a mathematical model. Validation and analysis of reconstructions can allow identification of key features of metabolism such as growth yield, resource distribution, network robustness, and gene essentiality. This knowledge can then be applied to create novel biotechnology.In general, the process to build a reconstruction is as follows: Draft a reconstruction Refine the model Convert model into a mathematical/computational representation Evaluate and debug model through experimentation↑
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