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Protein Data Condensation for Effective Quaternary Structure
Protein Data Condensation for Effective Quaternary Structure

... The main contribution of the work [5] is the exploitation of a pseudo amino acid composition to express a protein in terms of a set of discrete numbers, which is more powerful than the standard amino acid composition. In fact, it is able to take into account a considerable amount of sequence-order e ...
Making worms that glow in the dark
Making worms that glow in the dark

... beginning for what was to become one of the most widely used and useful tools available to cell biologists. The molecule – which was dubbed Green Fluorescent Protein, or GFP – remained little more than a scientific curiosity for thirty years. That changed in the 1990’s, however, when scientists sequ ...
B1 - BBS Biology Revision
B1 - BBS Biology Revision

... a) Protein molecules are made up of long chains of amino acids. These long chains are folded to produce a specific shape that enables other molecules to fit into the protein. Proteins act as: ■ structural components of tissues such as muscles ■ hormones, ■ antibodies ■ catalysts. b) Catalysts increa ...
Tree nomenclature
Tree nomenclature

... Charles Darwin’s 1859 book (On the Origin of Species By Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life) introduced the theory of evolution. To Darwin, the struggle for existence induces a natural selection. Offspring are dissimilar from their parents (that ...
Mechanism Of Hormonal Action:3
Mechanism Of Hormonal Action:3

... from ATP to serine or threonine amino acid residues of a specific protein causing its phosphorylation. The phosphorylated protein e.g. enzyme, mediates the ...
Molecule-Metabolism ppt
Molecule-Metabolism ppt

... The approach of a molecular Biologist is a reductionist one – they identify the steps in a metabolic pathway and breakdown each one into it’s component parts. This approach has been a very productive one. Our understanding of respiration (2.8) and photosynthesis (2.9) are good examples of the succes ...
MSDA tutorial: How to read output Excel files obtained from GO
MSDA tutorial: How to read output Excel files obtained from GO

... MSDA tutorial: How to read output Excel files obtained from GO ontologies extractions. In the output Excel file you get after GO ontologies extraction, multiple columns will have been added to the initial input Excel file. These columns include general information about genes/proteins, and specific ...
LA-SiGMA Molecular Dynamics Course 2012-2013
LA-SiGMA Molecular Dynamics Course 2012-2013

... will conduct a molecular simulation project. Students who take this course will learn how to configure a computer cluster (ideally a Little Fe but any two computers and a network switch can be used), install and utilize freely available molecular visualization, analysis and dynamics software tools, ...
PALI—a database of Phylogeny and ALIgnment of homologous
PALI—a database of Phylogeny and ALIgnment of homologous

... common fold may or may not have similar function. However, 3-D structures of homologous proteins with clear sequence similarity have highly similar structures and often have similar biological roles in the living systems (for examples see 4–6). Variation in the amino acid sequences of homologous pro ...
biological molecules of life
biological molecules of life

... When Nucleic Acids hydrogen bond to each other they always pair up C to G, and A to T in DNA. For RNA , they pair up C to G and A to U. The Academic Support Center @ Daytona State College (Science 115, Page 28 of 29) ...
Infrared spectroscopy: a tool for protein characterization Chenge Li
Infrared spectroscopy: a tool for protein characterization Chenge Li

... The contractile force of a muscle is generated through the interaction of two proteins, myosin and actin. In muscle cells, molecules of myosin arrange and form structures called thick filaments. Molecules of globular actin, together with two regulatory proteins, troponin and tropomyosin form the th ...
Protein and Minerals in the Athlete`s Diet
Protein and Minerals in the Athlete`s Diet

... either micellar casein or native whey protein in one dose and the [13C]leucine was followed through the blood and into tissues for 7 hours after consumption. Results of the study showed that ingestion of native whey proteins induced “a dramatic but short increase of plasma amino acids,” while ingest ...
CHEMISTRY SEMESTER ONE LAB 1 Lab 1: Stoichiometry and
CHEMISTRY SEMESTER ONE LAB 1 Lab 1: Stoichiometry and

... 4. Slowly add the hot CuSO4 solution to the beaker containing the iron powder. 5. Swirl the flask to insure the reaction goes to completion. When the reaction is completed, allow the copper product to settle. Then carefully decant the liquid from the copper (pour off the liquid and leave the solid b ...
supplementary figures
supplementary figures

... the mRNA was purified, reverse transcribed and then qPCR was performed. The expression levels of MMP1 were normalised to GAPDH. qPCR was performed in triplicate for each cDNA template, error bars indicate means +/− SEM, and asterisks significance (p < 0.05; t-test). d. Comparative expression of MMP1 ...
Transient intracellular expression of chicken UCH-L3 and
Transient intracellular expression of chicken UCH-L3 and

... S2 Fig. Inhibition of UCH-L5 activity in HD11 cells. (A). HD11 macrophage cells were treated with two different amounts of b-AP15 inhibitor (as indicated in the figure) for 18 hours, followed by cell lysis, Ub-VS-HA probe reaction, SDS-PAGE and anti-HA western blotting to show general profile of DUB ...
PowerPoint Learning Quest
PowerPoint Learning Quest

... two DNA strands bonded together by strand bases. These bonds are hydrogen bonds and are therefore individually weak. However these bonds zip the two strands together with a strength to give the double helix stability. ...
How to study proteins by circular dichroism
How to study proteins by circular dichroism

... aspects of instrument calibration or sample characterisation. In this article, we summarise the basis of the CD approach and its application to the study of proteins, and then present clear guidelines on how reliable data can be obtained and analysed. D 2005 Elsevier B.V. All rights reserved. Keywor ...
How to study proteins by circular dichroism
How to study proteins by circular dichroism

... aspects of instrument calibration or sample characterisation. In this article, we summarise the basis of the CD approach and its application to the study of proteins, and then present clear guidelines on how reliable data can be obtained and analysed. D 2005 Elsevier B.V. All rights reserved. Keywor ...
2.1 Molecules to metabolim
2.1 Molecules to metabolim

... The approach of a molecular Biologist is a reductionist one – they identify the steps in a metabolic pathway and breakdown each one into it’s component parts. This approach has been a very productive one. Our understanding of respiration (2.8) and photosynthesis (2.9) are good examples of the succes ...
Protein digestion in poultry – the value of an
Protein digestion in poultry – the value of an

... • Though ProAct currently delivers substantial value through the CP/AA matrices and/or DIF values and the focus of use is feed cost saving there may be additional advantages in performance in the future • Work is ongoing to further explore the mechanisms responsible for the effect of ProAct on gut h ...
The Purification and Characterization of the Highly Labeled
The Purification and Characterization of the Highly Labeled

... unit. After dialysis and lyophilization the material was passed through a column of A-5 M agarose, which is capable of fractionating molecules in the molecular weight range of 5 x 105 to 5 x 10G, the smaller components requiring a larger volume for elution. From the elution profile (Fig. 2) it is ap ...
BiotoolTM Plant Leaf Direct PCR Kit (B4003)
BiotoolTM Plant Leaf Direct PCR Kit (B4003)

... BiotoolTM Plant Leaf Direct PCR Kit (B4003) Introduction The BiotoolTM Plant Leaf Direct PCR Kit provides a fast one-step preparation and PCR amplification that is specifically designed for multiple plants excluding the polysaccharide and polyphenols plants. Biotool’s trademarked Buffers rapidly dig ...
Monte Carlo Simulations of HIV Capsid Protein
Monte Carlo Simulations of HIV Capsid Protein

... μM, is in reasonable agreement with experimental measurement. A wide range of binding interfaces, primarily between the NTDs, are identified in the simulations. Although some observed bound structures here closely resemble the major binding interfaces in the capsid assembly, they are statistically in ...
Protein Sequence Analysis in SeqWEB
Protein Sequence Analysis in SeqWEB

... SWISS-PROT excels in annotation, exhibits very little redundancy and is thoroughly integrated with other databases. The extensive annotation and exhaustive to reduce redundancy mean that entries can take time before they are made available, but when they are, they are a complete and thorough resourc ...
The Process Whereby Your Genes Make Your Proteins
The Process Whereby Your Genes Make Your Proteins

... components: the sugar deoxyribose (shown as a pentagon), a phosphate group (shown as a circle with the letter “P” inside) and a base. There are four different types of nucleotides in DNA; each one contains a different base. Some nucleotides contain the base adenine (A), some contain the base cytosin ...
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QPNC-PAGE

QPNC-PAGE, or quantitative preparative native continuous polyacrylamide gel electrophoresis, is a high-resolution technique applied in biochemistry and bioinorganic chemistry to separate proteins by isoelectric point. This standardized variant of native gel electrophoresis is used by biologists to isolate active or native metalloproteins in biological samples and to resolve properly and improperly folded metal cofactor-containing proteins or protein isoforms in complex protein mixtures.
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