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Statistical analysis of DNA microarray data
Statistical analysis of DNA microarray data

... Which genes to use for normalization  Housekeeping genes  Genes involved in essential activities of cell maintenance and survival, but not in cell function and proliferation  These genes will be similarly expressed in all samples.  Difficult to identify – need to be confirmed  Affymetrix GeneC ...
EXECUTIVE SUMMARY of THE RISK ASSESSMENT AND RISK
EXECUTIVE SUMMARY of THE RISK ASSESSMENT AND RISK

... proteins such as the Bacillus thuringiensis (Bt) crystal toxin (Cry) and vegetative insecticidal protein (VIP), present in other GM cottons released previously. Briefly, both Cry and VIP are activated in the Lepidopteran gut and bind to various proteins that act as receptors on the gut lining, subse ...
M-protein and other intrinsic virulence factors of Streptococcus
M-protein and other intrinsic virulence factors of Streptococcus

... metabolic features [7-9]. Objective criteria have been established to detect them, especially pathogenicity island: presence of virulence-related genes, location on the chromosome, different G+C content, direct repeats on the flanks, association with a tRNA, presence of mobility genes (integrases, t ...
A phage library and two cosmid libraries were
A phage library and two cosmid libraries were

... Two cosmid libraries were prepared according to different experimental protocols (Materials and Methods). For the construction of both libraries (I and II) Mspl partial digests of the same human placenta DNA were used. The insert of the M13 subclone 1-1 was used to screen both cosmid libraries. A to ...
BMC Genomics
BMC Genomics

... metabolic features [7-9]. Objective criteria have been established to detect them, especially pathogenicity island: presence of virulence-related genes, location on the chromosome, different G+C content, direct repeats on the flanks, association with a tRNA, presence of mobility genes (integrases, t ...
Mining medical data using multiple corpora
Mining medical data using multiple corpora

... biomedicine arise because there are many databases in this field (records, news) and most of the time, every database has its own vocabulary, which distorts the query even though the concept behind the term is well known. "The Metathesaurus is a database of information on concepts that appear in one ...
PDF
PDF

Trachemys scripta elegans Red-Eared Turtle ( Fc)
Trachemys scripta elegans Red-Eared Turtle ( Fc)

... IgY is a low m.w. serum Ab encoded by the y gene in nonmammalian tetrapods, including birds (6–8), reptiles (9, 10), and amphibians (11–14). The gene is thought to have developed from m by a duplication event (2, 15) because of their sequence homology and similar gene structures. It is also thought ...
Pr-P-105
Pr-P-105

... Expressions of TBG and TBP genes were promoted by UV-B treatment and the highest expression of the two genes were observed at 5 min of UV-B treatment and then decreased, especially for TBG. Many studies confirmed that enhanced UV-B radiation exerted an influence on physiological and biochemical proc ...
Basic genetics: Directed-study File
Basic genetics: Directed-study File

... you. Therefore, you should read the chapters on genetics in Atkinson & McHanwell or Tortora • Some of the slides have notes attached, so you might like to print off as ‘notes pages’ to assist you ...
Genome-Wide Analysis of In Vivo Binding of the Master Regulator
Genome-Wide Analysis of In Vivo Binding of the Master Regulator

... To allow activation and screening of cryptic antibiotic biosynthetic clusters, detailed insight is required into the linkages between environmental (nutritional) signals and secondary metabolite production. Carbon source utilization is a major determining factor in the metabolic control of antibioti ...
Analysis of Biological Networks: Genetic Interaction Networks
Analysis of Biological Networks: Genetic Interaction Networks

Ascidian embryogenesis and the origins of the chordate body plan
Ascidian embryogenesis and the origins of the chordate body plan

... embryos possess well-&find cell lineages that arc similar in detail to those &scribed in 6’. &u~.c. Klectroporation and ...
Chapter 5 - Online Open Genetics
Chapter 5 - Online Open Genetics

... How can genes, which are inherited (in the case of a Thus, quantitative traits are sometimes called polygenic diploid) as at most two variants each, explain the wide traits, because it is assumed that their phenotypes are range of continuous variation observed for many traits? controlled by the comb ...
The Chloroplast trnT–trnF Region in the Seed Plant
The Chloroplast trnT–trnF Region in the Seed Plant

... gymnosperm lineage Gnetales (Gnetum, Welwitschia, and Ephedra), with especially dense sampling in Gnetum for which we sequenced 41 accessions, representing most of the 25–35 species. The trnL intron has a conserved secondary structure and contains elements that are homologous across land plants, whi ...
The use of Minimum spanning Trees in microarray expression data
The use of Minimum spanning Trees in microarray expression data

... Feature selection counts the gene’s support to a partition Feature selection used here is t-statistic with pooled variance. T-statistic is heuristic measure Genes with absolute t-statistic greater than a threshold are selected University of Crete ...
Complete genome sequence of Roseophage vB_DshP
Complete genome sequence of Roseophage vB_DshP

... transcriptional stage [25], while this polymerase shared only <46% amino acid identity with its N4 homologs (Additional file 2: Table S2). In addition, this polymerase is an evolutionarily highly diverged enzyme [25] and can be used as a hypervariable region to distinguish different isolates [42]. F ...
Linkage Introduction
Linkage Introduction

... If the genes are closely linked, a gamete is much more likely to contain (A1,B1) or (A2,B2), which are ”non-recombinants.” If there is recombination, a gamete will contain (A1, B2) or (A2,B1), but this is less likely if the loci are linked. ...
Genet Mol Res, 13 - Funpec-RP
Genet Mol Res, 13 - Funpec-RP

... (Terayama, 1989). Nonetheless, the mode of inheritance of OPLL remains unclear (Terayama, 1989; Hamanishi et al., 1995). Unfortunately, because we did not determine the complete pedigree of each enrolled family, we cannot further speculate about the mode of inheritance. The present study is the firs ...
Table 3S
Table 3S

Overview of Conjugation
Overview of Conjugation

... Hfr Strain1 = MZXWC 2 = LANCW 3 = ALBRU 4 = ZMURB ...
Overview of Conjugation
Overview of Conjugation

... Do 1. Three point crosses. 2. Reciprocal crosses. Both use recombination frequencies to determine gene order. Lets look more closely at what happens in the Fcell (the exconjugant). ...
Document
Document

... A child who inherits the genes bb will have blue eyes In the F2 generation the ratio of brown eyed children to blue eyes will be 3 to 1 ...
Bayesian recursive mixed linear model for gene expression
Bayesian recursive mixed linear model for gene expression

Community Genome Annotation Training
Community Genome Annotation Training

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Ridge (biology)

Ridges (regions of increased gene expression) are domains of the genome with a high gene expression; the opposite of ridges are antiridges. The term was first used by Caron et al. in 2001. Characteristics of ridges are:Gene denseContain many C and G nucleobasesGenes have short intronshigh SINE repeat densitylow LINE repeat density↑ 1.0 1.1
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