Connections between mRNA 3( end processing and transcription
... formation to transcription is mediated by the C-terminal domain (CTD) of the RNApII largest subunit. This domain consists of multiple (27–52) repeats of the heptamer sequence YSPTSPS. Serines 2 and 5 of this sequence are the major sites of CTD phosphorylation. The current paradigm is that different ...
... formation to transcription is mediated by the C-terminal domain (CTD) of the RNApII largest subunit. This domain consists of multiple (27–52) repeats of the heptamer sequence YSPTSPS. Serines 2 and 5 of this sequence are the major sites of CTD phosphorylation. The current paradigm is that different ...
Gene Section EXT2 (exostoses (multiple) 2) Atlas of Genetics and Cytogenetics
... Sixteen exons across the EXT2 locus were identified, two of which (1a and 1b) are alternatively spliced; spans approximately 108 kb of genomic DNA. ...
... Sixteen exons across the EXT2 locus were identified, two of which (1a and 1b) are alternatively spliced; spans approximately 108 kb of genomic DNA. ...
Full Text PDF - Mary Ann Liebert, Inc. publishers
... presence of such boundary elements, at either end of a given expression domain, has been recently recognized and identified as one of the most crucial and versatile regulatory elements of a gene (Bell et al., 2001). An alternative and interesting interpretation for these important regulatory sequenc ...
... presence of such boundary elements, at either end of a given expression domain, has been recently recognized and identified as one of the most crucial and versatile regulatory elements of a gene (Bell et al., 2001). An alternative and interesting interpretation for these important regulatory sequenc ...
beckwith-wiedemann syndrome
... (UPD) which occurs when both copies of chromosome 11 are derived from the same parent. Patients with BWS and paternal UPD have two paternally derived copies of 11p15.5 and no maternal contribution for this region. In these patients, there are methylation defects at both KvDMR1 and H19. ...
... (UPD) which occurs when both copies of chromosome 11 are derived from the same parent. Patients with BWS and paternal UPD have two paternally derived copies of 11p15.5 and no maternal contribution for this region. In these patients, there are methylation defects at both KvDMR1 and H19. ...
Compound leaves: equal to the sum of their parts?
... FLO/LFY orthologs in vegetative apices have been summarized recently (Busch and Gleissberg, 2003). In species with compound leaves, such as pea, tomato, grapevine and poppy, FLO/LFY expression is prolonged during leaf development and accompanies organogenesis at the marginal blastozone (Busch and Gl ...
... FLO/LFY orthologs in vegetative apices have been summarized recently (Busch and Gleissberg, 2003). In species with compound leaves, such as pea, tomato, grapevine and poppy, FLO/LFY expression is prolonged during leaf development and accompanies organogenesis at the marginal blastozone (Busch and Gl ...
Control of ribosome traffic by position-dependent
... The translation rate Rx at a position x depends on the codon at this position. We use the codondependent rates determined in ref. [11], as summarized in table 1. To simplify the model, we assign one of the following three rates to each codon; A (∼35 codons/sec), B (∼8 codons/sec), and C-rate (∼4.5 c ...
... The translation rate Rx at a position x depends on the codon at this position. We use the codondependent rates determined in ref. [11], as summarized in table 1. To simplify the model, we assign one of the following three rates to each codon; A (∼35 codons/sec), B (∼8 codons/sec), and C-rate (∼4.5 c ...
Fungal - CBS-KNAW Fungal Biodiversity Centre
... this host (Wang et al., 1998). The unnamed Cercospora sp. reported by Crous et al. (2006) appeared to be morphologically and phylogenetically more similar to isolates in the C. apii complex than to C. zeae-maydis and C. zeina. The description of C. zeina (Crous et al., 2006) has resolved some of the ...
... this host (Wang et al., 1998). The unnamed Cercospora sp. reported by Crous et al. (2006) appeared to be morphologically and phylogenetically more similar to isolates in the C. apii complex than to C. zeae-maydis and C. zeina. The description of C. zeina (Crous et al., 2006) has resolved some of the ...
Chapter 1 - Bioinformatics Research Center
... DNA features that are associated with genes, such as open reading frames (ORFs), transcription start and termination sites, and exon/intron boundaries. Once a gene has been identified, it must be annotated, which entails linking its sequence to genetic data about the function, expression, and mutant ...
... DNA features that are associated with genes, such as open reading frames (ORFs), transcription start and termination sites, and exon/intron boundaries. Once a gene has been identified, it must be annotated, which entails linking its sequence to genetic data about the function, expression, and mutant ...
10p proximal deletions from 10p11 and 10p12
... Each new version of the genome is often referred to as an ‘assembly’ or a ‘build’. Every few years a new assembly is released. The genetic information in this guide is based on the Genome Reference Consortium (GRC) human (h) genome assembly number 37 (GRCh37), which was released in 2009. Confusingly ...
... Each new version of the genome is often referred to as an ‘assembly’ or a ‘build’. Every few years a new assembly is released. The genetic information in this guide is based on the Genome Reference Consortium (GRC) human (h) genome assembly number 37 (GRCh37), which was released in 2009. Confusingly ...
3-23_Genetics
... “We are in an economic recession. The economy is bad, so everybody has to cut back on the amount of money they spend.” “Since he turned 50, his hairline has started to ...
... “We are in an economic recession. The economy is bad, so everybody has to cut back on the amount of money they spend.” “Since he turned 50, his hairline has started to ...
SUPPLEMENTARY INFORMATION TABLE OF CONTENTS: 1
... brucei. Still, based on mapping data and estimates on other organisms, the total number is likely to be close to 200. The results of an initial scan of the HART1 and EM1 genomes allowed us to identify quite a reduced number of snoRNAs (Table S8). The HART1 and EM1 Phytomonas genomes show higher simi ...
... brucei. Still, based on mapping data and estimates on other organisms, the total number is likely to be close to 200. The results of an initial scan of the HART1 and EM1 genomes allowed us to identify quite a reduced number of snoRNAs (Table S8). The HART1 and EM1 Phytomonas genomes show higher simi ...
Mary Ann Osley*, Alastair Fleming, and Cheng
... promoters{Henry, 2003 #170}. As discussed below (III.2.1), the antagonistic activities of Rad6-Bre1 and Ubp8 during transcription promote transient accumulation of ub-H2B at the promoters of the GAL1 and PHO5 genes, which in turn is posited to control the balance between H3K4 and H3K36 methylation, ...
... promoters{Henry, 2003 #170}. As discussed below (III.2.1), the antagonistic activities of Rad6-Bre1 and Ubp8 during transcription promote transient accumulation of ub-H2B at the promoters of the GAL1 and PHO5 genes, which in turn is posited to control the balance between H3K4 and H3K36 methylation, ...
E. coli
... performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways. [more...] ...
... performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways. [more...] ...
Genetics Review
... Alleles • A dominant allele is one whose trait always shows up in an organism when the allele is present. - capital letter (AA, Aa) • A recessive allele is covered up when the dominant allele is present. - lower case letter (aa) ...
... Alleles • A dominant allele is one whose trait always shows up in an organism when the allele is present. - capital letter (AA, Aa) • A recessive allele is covered up when the dominant allele is present. - lower case letter (aa) ...
Translational selection is operative for synonymous codon usage in
... horizontal transfer of DNA between species differing in their genomic G+C contents (Garcia-Vallve et al., 2000; Karlin, ...
... horizontal transfer of DNA between species differing in their genomic G+C contents (Garcia-Vallve et al., 2000; Karlin, ...
Supplementary Data File Supplementary Figures Figure S1
... Table S1. Number of significant pathways obtained for the three stem cell data sets in the one-group case (adjusted P-value < 0.01). Number of significant pathways obtained for A. KEGG and B. REACTOME in the onegroup case when using pathVar based on either the variability statistic, or average gene ...
... Table S1. Number of significant pathways obtained for the three stem cell data sets in the one-group case (adjusted P-value < 0.01). Number of significant pathways obtained for A. KEGG and B. REACTOME in the onegroup case when using pathVar based on either the variability statistic, or average gene ...
Transcriptome analysis of Sacha Inchi (Plukenetia volubilis L
... Generally, two main pathways are involved in storage lipid accumulation: FA biosynthesis and triacylglycerol (TAG) assembly. In all plants studied, acyl carrier protein (ACP)-dependent de novo FA synthesis occurs almost exclusively in plastids [11,12]. FAs are synthesized from acetyl-CoA in a three- ...
... Generally, two main pathways are involved in storage lipid accumulation: FA biosynthesis and triacylglycerol (TAG) assembly. In all plants studied, acyl carrier protein (ACP)-dependent de novo FA synthesis occurs almost exclusively in plastids [11,12]. FAs are synthesized from acetyl-CoA in a three- ...
CHARACTER CHANGES CAUSED BY MUTATION OF AN ENTIRE
... important fact. The notch, flies heterozygous for an allelomorph of white had a lighter eye color than the flies in the corresponding stocks. This exaggerating effect of deficiency was especially striking in notch flies heterozygous for the darker allelomorphs of white, such as cherry, coral or bloo ...
... important fact. The notch, flies heterozygous for an allelomorph of white had a lighter eye color than the flies in the corresponding stocks. This exaggerating effect of deficiency was especially striking in notch flies heterozygous for the darker allelomorphs of white, such as cherry, coral or bloo ...
Benefits of being biased! - Indian Academy of Sciences
... Carlini and Stephan (2003) derived three different Adh constructs in which 1,6 and 10 codons coding for leucine had been mutated to the unpreferred leucine codon CTA. It is known from prior work that normally the frequency of CTA in Adh alleles of D. melanogaster is 0 (Nakamura et al. 2000). These t ...
... Carlini and Stephan (2003) derived three different Adh constructs in which 1,6 and 10 codons coding for leucine had been mutated to the unpreferred leucine codon CTA. It is known from prior work that normally the frequency of CTA in Adh alleles of D. melanogaster is 0 (Nakamura et al. 2000). These t ...