Reconciling the many faces of lateral gene transfer
... genomes). By considering both factors, the ancestry of equivocal cases, such as those in which ORFs displayed a low level of sequence identity and sporadic phylogenetic distribution, could be resolved. The PipMaker program (http://globin.cse.psu.edu/ enterix), with E. coli MG1655 as the reference ge ...
... genomes). By considering both factors, the ancestry of equivocal cases, such as those in which ORFs displayed a low level of sequence identity and sporadic phylogenetic distribution, could be resolved. The PipMaker program (http://globin.cse.psu.edu/ enterix), with E. coli MG1655 as the reference ge ...
A Flexible Approach to Implement Genomic
... * Select DNA fosmids of approximately 40 kb in length from an online database * Analyze these sequences by using the programs Consed and Phred/Phrap * Look at the gaps present in the fosmid and the overall quality of the sequence (Fig. 3) * Correct high-quality discrepancies between base pairs when ...
... * Select DNA fosmids of approximately 40 kb in length from an online database * Analyze these sequences by using the programs Consed and Phred/Phrap * Look at the gaps present in the fosmid and the overall quality of the sequence (Fig. 3) * Correct high-quality discrepancies between base pairs when ...
Comparison of the NSF45K Array Data with Other Microarray
... light-inducible genes that do not belong to gene families in rice (Figure 1). Therefore, these four are referred to as “unique genes”. With the possible exceptions of steps 4 (4-1 and 4-5) and 6 (6-1 and 6-2) for which two gene family members appeared similarly induced in the light, these results in ...
... light-inducible genes that do not belong to gene families in rice (Figure 1). Therefore, these four are referred to as “unique genes”. With the possible exceptions of steps 4 (4-1 and 4-5) and 6 (6-1 and 6-2) for which two gene family members appeared similarly induced in the light, these results in ...
Cancer-inducing genes
... promoting cancer: p53 mutation affects the expression of group A genes Ras mutation modifies the expression of group B genes both p53 and Ras are mutated in the same cell, they synergistically regulate a subset of genes (AB) known as cooperation response genes (CRGs), which turn out to be cruc ...
... promoting cancer: p53 mutation affects the expression of group A genes Ras mutation modifies the expression of group B genes both p53 and Ras are mutated in the same cell, they synergistically regulate a subset of genes (AB) known as cooperation response genes (CRGs), which turn out to be cruc ...
Sexual and Asexual Reproduction and Variation
... Sexual Reproduction • Sexual Reproduction is the creation of offspring using gametes which causes variation. • Sexual Reproduction involves two organisms. Male and female gametes (sex cells) join together to create a new cell. This develops into a new individual. The joining of gametes is called fe ...
... Sexual Reproduction • Sexual Reproduction is the creation of offspring using gametes which causes variation. • Sexual Reproduction involves two organisms. Male and female gametes (sex cells) join together to create a new cell. This develops into a new individual. The joining of gametes is called fe ...
11-1 The Work of Mendel
... 3. What was the genotype (use letters “T” and “t”) for Mendel’s F1 generation? 4. How did the F2 generation suggest that ...
... 3. What was the genotype (use letters “T” and “t”) for Mendel’s F1 generation? 4. How did the F2 generation suggest that ...
Review: RECOMB Satellite Workshop on Regulatory Genomics
... An Impassioned Speech on the Evolution of the Scientific Journal • “If you publish [your work] in a journal like Science which fewer and fewer people in the world have access to you run a really big risk of being the next Mendel and that your work will languish in obscurity” • Don’t publish in a jo ...
... An Impassioned Speech on the Evolution of the Scientific Journal • “If you publish [your work] in a journal like Science which fewer and fewer people in the world have access to you run a really big risk of being the next Mendel and that your work will languish in obscurity” • Don’t publish in a jo ...
this poster
... RNA-mediated silencing of transposons is an important defence mechanism to suppress the proliferation of transposons in plants and animals. In plants such processes for transposon silencing have been suggested to act in both the female and male gametophytes. Argonaute proteins are key players in RNA ...
... RNA-mediated silencing of transposons is an important defence mechanism to suppress the proliferation of transposons in plants and animals. In plants such processes for transposon silencing have been suggested to act in both the female and male gametophytes. Argonaute proteins are key players in RNA ...
Topic guide 7.2: Regulation of gene expression
... Some transcription factors are general and bind with RNA polymerase. Some differentially regulate the expression of genes by binding to enhancer regions of DNA. •• Many are involved in development and can switch genes on or off as needed to direct the differentiation of cells. •• The Hox transcripti ...
... Some transcription factors are general and bind with RNA polymerase. Some differentially regulate the expression of genes by binding to enhancer regions of DNA. •• Many are involved in development and can switch genes on or off as needed to direct the differentiation of cells. •• The Hox transcripti ...
No Slide Title
... • Highly acetylated histones are associated with actively transcribed chromatin – Increasing histone acetylation can turn on some genes. – Immunoprecipitation of DNA cross-linked to chromatin with antibodies against Ac-histones enriches for actively transcribed genes. ...
... • Highly acetylated histones are associated with actively transcribed chromatin – Increasing histone acetylation can turn on some genes. – Immunoprecipitation of DNA cross-linked to chromatin with antibodies against Ac-histones enriches for actively transcribed genes. ...
Humans: Nature and Nuture
... • Gene expression depends on internal and external factors • Society’s responsibility to establish an equal foundation where biology and genetics are balanced when comparing ...
... • Gene expression depends on internal and external factors • Society’s responsibility to establish an equal foundation where biology and genetics are balanced when comparing ...
Journal of Advanced Computing (2012) 1
... 2) A file containing a node knowledge vector. This is an n dimensional vector where n is the number of genes, and an entry represents the node weight for a gene. An example of a node weight is the number of GO terms or PubMed articles associated with a gene. 3) A file containing gene identifiers. Th ...
... 2) A file containing a node knowledge vector. This is an n dimensional vector where n is the number of genes, and an entry represents the node weight for a gene. An example of a node weight is the number of GO terms or PubMed articles associated with a gene. 3) A file containing gene identifiers. Th ...
Dominant-Recessive Inheritance
... • Ss = sickle-cell trait (both aberrant and normal Hb are made); can suffer a sickle-cell crisis under prolonged reduction in blood O2) • ss = sickle-cell anemia (only aberrant Hb is made; more susceptible to sickle-cell crisis) ...
... • Ss = sickle-cell trait (both aberrant and normal Hb are made); can suffer a sickle-cell crisis under prolonged reduction in blood O2) • ss = sickle-cell anemia (only aberrant Hb is made; more susceptible to sickle-cell crisis) ...
Recombination Frequencies - Western Washington University
... • Female is homozygous recessive X-linked gene, – what percentage of male offspring will express? ...
... • Female is homozygous recessive X-linked gene, – what percentage of male offspring will express? ...
Chapter 29 DNA as the Genetic Material Recombination of DNA
... • Creates diploid condition for some genes. • Recombination exchanges portions of the diploid genes. • Can be used for mapping position of genes on chromosome. (Fig 29.7) ...
... • Creates diploid condition for some genes. • Recombination exchanges portions of the diploid genes. • Can be used for mapping position of genes on chromosome. (Fig 29.7) ...
File
... 10.3.2 Polygenic inheritance contribution to continuous variation. a) Is the genotypic variation in the population. The more genes involved with the characteristic the greater the number of phenotypic classes. (b) Phenotypic variation = genotypic variation + environmental variation. The environmenta ...
... 10.3.2 Polygenic inheritance contribution to continuous variation. a) Is the genotypic variation in the population. The more genes involved with the characteristic the greater the number of phenotypic classes. (b) Phenotypic variation = genotypic variation + environmental variation. The environmenta ...
Introducing the Chromosome Yr 12 Biology
... The Sutton-Boveri theory, otherwise known as the ‘chromosome theory of inheritance’, stated that chromosomes carried the units of inheritance and occurred in distinct pairs. The two scientists worked separately but came to the same conclusions. As there were more inheritable traits than there were c ...
... The Sutton-Boveri theory, otherwise known as the ‘chromosome theory of inheritance’, stated that chromosomes carried the units of inheritance and occurred in distinct pairs. The two scientists worked separately but came to the same conclusions. As there were more inheritable traits than there were c ...
REGULATING GENE EXPRESSION
... particular protein, the gene is activated and transcription and translation occurs. When a cell no longer needs the protein, the gene is inactivated and transcription and translation can’t occur Some genes are active in some cells but not in others. ...
... particular protein, the gene is activated and transcription and translation occurs. When a cell no longer needs the protein, the gene is inactivated and transcription and translation can’t occur Some genes are active in some cells but not in others. ...
Differential Expression II
... taking inverses to avoid dividing by numbers close to zero. So, we might replace Sx2 by Sx2+s where s is some small number. What number should be chosen? Usually s is based on the histogram of within gene variances, so this method is similar to empirical Bayes But: there are no d.f. associated with ...
... taking inverses to avoid dividing by numbers close to zero. So, we might replace Sx2 by Sx2+s where s is some small number. What number should be chosen? Usually s is based on the histogram of within gene variances, so this method is similar to empirical Bayes But: there are no d.f. associated with ...
Presentation
... Cluster The relation between histone deacetylase and apoptosis is now well known It was demonstrated that caspase-2 and -3, which are part of the superfamily of caspases, the major group of protein responsible for apoptosis triggering (Cryns and Yuan, 1998), are able to interact and cleave the a ...
... Cluster The relation between histone deacetylase and apoptosis is now well known It was demonstrated that caspase-2 and -3, which are part of the superfamily of caspases, the major group of protein responsible for apoptosis triggering (Cryns and Yuan, 1998), are able to interact and cleave the a ...
Supplemental Figure Legends Figure S1. Normal beta
... P-value<0.01. Error bars indicate ±STDV. (B) A luciferase reporter gene under the regulation of Hypoxia-Responsive Elements (HRE) was co-transfected with empty vector, WWOX, HA-HIF1α with empty vector, and HA-HIF1α with WWOX plasmids into 293T cells and subjected to normoxia (20% O2) (green) or Hypo ...
... P-value<0.01. Error bars indicate ±STDV. (B) A luciferase reporter gene under the regulation of Hypoxia-Responsive Elements (HRE) was co-transfected with empty vector, WWOX, HA-HIF1α with empty vector, and HA-HIF1α with WWOX plasmids into 293T cells and subjected to normoxia (20% O2) (green) or Hypo ...
Heredity Inherited Traits
... • Phenotype – An individual’s observable traits (expression of the genotype) • What people can SEE when they look at you • Photograph = picture (what you see) like the Phenotype is the observable trait (what you see) ...
... • Phenotype – An individual’s observable traits (expression of the genotype) • What people can SEE when they look at you • Photograph = picture (what you see) like the Phenotype is the observable trait (what you see) ...
Genetics
... • Gene- The set of information that controls a trait; a part of DNA that codes for a specific trait. • Traits- A characteristic that an organism can pass on to its offspring through genes. ...
... • Gene- The set of information that controls a trait; a part of DNA that codes for a specific trait. • Traits- A characteristic that an organism can pass on to its offspring through genes. ...
pptx formatted for Benson Hill Biosystems
... Project Objectives: Demonstrate improvements in photosynthesis, plant growth, and yield by overexpression of photosynthesis-associated transcription factors identified through developmental transcriptomics and bioinformatic analyses. Background/Rationale: • Benson Hill Biosystem’s PSKbase™ is a prop ...
... Project Objectives: Demonstrate improvements in photosynthesis, plant growth, and yield by overexpression of photosynthesis-associated transcription factors identified through developmental transcriptomics and bioinformatic analyses. Background/Rationale: • Benson Hill Biosystem’s PSKbase™ is a prop ...