2007-10_GO-resources_jblake
... The first column is the gene or gene product symbol and name; clicking on the name will take you to the AmiGO gene product detail page, which shows the information held in the GO database about that gene product, including all its GO annotations and the peptide sequence (if available). By clicking ...
... The first column is the gene or gene product symbol and name; clicking on the name will take you to the AmiGO gene product detail page, which shows the information held in the GO database about that gene product, including all its GO annotations and the peptide sequence (if available). By clicking ...
Mechanisms and constraints shaping the evolution of body plan
... for the study by Ten Tusscher and Hogeweg [33] that used a genome encoding the regulatory network, studies used the GRN directly as the genotype. As a consequence, mutations occur on the network rather than on the genome sequence. Table 1 furthermore shows that studies differ in whether a small but e ...
... for the study by Ten Tusscher and Hogeweg [33] that used a genome encoding the regulatory network, studies used the GRN directly as the genotype. As a consequence, mutations occur on the network rather than on the genome sequence. Table 1 furthermore shows that studies differ in whether a small but e ...
The landscape of microbial phenotypic traits and associated genes
... applied, meaning these provisional annotations could potentially be reassigned. Inferring phenotypes from genomes and metagenomes Prokaryotic genome sequences and gene annotations were from NCBI Entrez Genomes, while COG/NOG gene families were from eggNOG 3 (38). We only considered species with avai ...
... applied, meaning these provisional annotations could potentially be reassigned. Inferring phenotypes from genomes and metagenomes Prokaryotic genome sequences and gene annotations were from NCBI Entrez Genomes, while COG/NOG gene families were from eggNOG 3 (38). We only considered species with avai ...
McGrath, Patrick: Uses of the Singular Value Decompositions in Biology
... SVD analysis has been used to characterize protein dynamics. (Romo et al, 1995) used an SVD to analyze the movement of myoglobin. Using molecular dynamics methods, Romo measured the atomic positions of all atoms sampled during the simulation. According to Romo, the SVD provided a method for decompos ...
... SVD analysis has been used to characterize protein dynamics. (Romo et al, 1995) used an SVD to analyze the movement of myoglobin. Using molecular dynamics methods, Romo measured the atomic positions of all atoms sampled during the simulation. According to Romo, the SVD provided a method for decompos ...
Genetics Understanding Inheritance What controls traits?
... Genotype and Phenotype Geneticists call how a trait appears, or is expressed, the trait’s phenotype (FEE nuh tipe). A person’s eye color is an example of phenotype. The trait of eye color can be expressed as blue, brown, green, or other colors. Mendel concluded that two alleles control the expressi ...
... Genotype and Phenotype Geneticists call how a trait appears, or is expressed, the trait’s phenotype (FEE nuh tipe). A person’s eye color is an example of phenotype. The trait of eye color can be expressed as blue, brown, green, or other colors. Mendel concluded that two alleles control the expressi ...
Social Psychology 320 – week 3 Lecture 2 Gabriela Ilie
... Phylogeny is the study of the evolution of a genetically related group of organisms. ...
... Phylogeny is the study of the evolution of a genetically related group of organisms. ...
Refine Query Set - University of Delaware
... • extend unigrams and bigrams to full length names Using other subsets of Query Set • currently, eGIFT uses the About Set to compute key terms • different kinds of information can be obtained from variants of Extra Set and other subsets ...
... • extend unigrams and bigrams to full length names Using other subsets of Query Set • currently, eGIFT uses the About Set to compute key terms • different kinds of information can be obtained from variants of Extra Set and other subsets ...
Genetic Algorithms - Northwestern University
... • There is a group of organisms in an environment • At some point, each organism dies • Before it dies each organism may reproduce – Sexually: offspring have traits from multiple parents – Asexually: offspring is a clone ...
... • There is a group of organisms in an environment • At some point, each organism dies • Before it dies each organism may reproduce – Sexually: offspring have traits from multiple parents – Asexually: offspring is a clone ...
Photosynthesis
... Both sperm and egg carry one of each of the 22 autosomes The egg always carries the X chromosome as number 23 The sperm may carry either and X or Y If the sperm donates an X in fertilization, the zygote will be female If the sperm donates a Y in fertilization, the zygote will be male Therefore, t ...
... Both sperm and egg carry one of each of the 22 autosomes The egg always carries the X chromosome as number 23 The sperm may carry either and X or Y If the sperm donates an X in fertilization, the zygote will be female If the sperm donates a Y in fertilization, the zygote will be male Therefore, t ...
A powerful test of independent assortment that determines
... After performing a genome-wide inheritance-by-descent (IBD) scan, researchers are often faced with the following dilemma: ‘Should I run a time consuming simulation to get an accurate estimate of the genome-wide corrected (that is, adjusted) P-value, or should I approximate the adjusted P-value, whic ...
... After performing a genome-wide inheritance-by-descent (IBD) scan, researchers are often faced with the following dilemma: ‘Should I run a time consuming simulation to get an accurate estimate of the genome-wide corrected (that is, adjusted) P-value, or should I approximate the adjusted P-value, whic ...
Excel spreadsheet
... test, neg depletion (column BP) < 5.9e-5. 57 tilings, representing 56 genes, passed this query and are shown in change tolerance neg dep data only. 18 of these genes were affected by purification method in that there was a significant interaction effect between method of purification (FACS or negati ...
... test, neg depletion (column BP) < 5.9e-5. 57 tilings, representing 56 genes, passed this query and are shown in change tolerance neg dep data only. 18 of these genes were affected by purification method in that there was a significant interaction effect between method of purification (FACS or negati ...
MODELING GENE EXPRESSION FROM MICROARRAY
... data, and capable of reducing the complexity of the data to make it comprehensible. Substantial effort is being made to build models to analyze it. Non-hierarchical clustering techniques such as k-means clustering are a class of mixture model-based approaches4. They group genes with similar expressi ...
... data, and capable of reducing the complexity of the data to make it comprehensible. Substantial effort is being made to build models to analyze it. Non-hierarchical clustering techniques such as k-means clustering are a class of mixture model-based approaches4. They group genes with similar expressi ...
Investigation of Common Variations of ABCB4, ATP8B1 and
... V444A is a highly prevalent variant of ABCB11 and its allele frequency has been reported in Japanese and Caucasian populations (14). The allele frequency of V444A in the current study was 52.8%. This variation has been previously implicated with higher frequencies in ICP and DIC than normal subjects ...
... V444A is a highly prevalent variant of ABCB11 and its allele frequency has been reported in Japanese and Caucasian populations (14). The allele frequency of V444A in the current study was 52.8%. This variation has been previously implicated with higher frequencies in ICP and DIC than normal subjects ...
7.1 Chromosomes and Phenotype
... • Gene expression is often related to whether a gene is located on an autosome or a sex chromosome – Sex chromosomes: determine gender – Autosomes: all other chromosomes- no relation to gender • All genes that Mendel studied were autosomes • Most traits are the result of autosomal genes ...
... • Gene expression is often related to whether a gene is located on an autosome or a sex chromosome – Sex chromosomes: determine gender – Autosomes: all other chromosomes- no relation to gender • All genes that Mendel studied were autosomes • Most traits are the result of autosomal genes ...
Biotechnology in Livestock Improvement
... for the protein's function. Proteins carry out almost all the functions needed for cells to live. A change to the DNA in a gene can change a protein's amino acids, changing its shape and function: This, however, can have a dramatic effect in the cell and on the organism as a whole. Although genetics ...
... for the protein's function. Proteins carry out almost all the functions needed for cells to live. A change to the DNA in a gene can change a protein's amino acids, changing its shape and function: This, however, can have a dramatic effect in the cell and on the organism as a whole. Although genetics ...
Chapter 6 GENETIC LINKAGE AND MAPPING IN EUKARYOTES
... diagram that describes the order of genes along a chromosome. Newer strategies for gene mapping are described in Chapter 20. However, an understanding of traditional mapping studies, as described in this chapter, will strengthen our appreciation for these newer molecular approaches. More importantly ...
... diagram that describes the order of genes along a chromosome. Newer strategies for gene mapping are described in Chapter 20. However, an understanding of traditional mapping studies, as described in this chapter, will strengthen our appreciation for these newer molecular approaches. More importantly ...
Background Selection in Single Genes May Explain
... The basis for this can be understood as follows. Published data on autosomal DNA sequence polymorphisms in regions with normal recombination rates in African populations of Drosophila melanogaster yield a mean nonsynonymous nucleotide site diversity of 0.3% (B. Vicoso, personal communication). With ...
... The basis for this can be understood as follows. Published data on autosomal DNA sequence polymorphisms in regions with normal recombination rates in African populations of Drosophila melanogaster yield a mean nonsynonymous nucleotide site diversity of 0.3% (B. Vicoso, personal communication). With ...
The viriosphere, diversity, and genetic exchange within phage
... genomic approaches for interrogating viral communities are becoming routine [18]. Pulse field gel electrophoresis is a culture-independent approach that has been used to examine how diverse the genome sizes of the dominant members of virioplankton communities are. The studies have shown substantial ...
... genomic approaches for interrogating viral communities are becoming routine [18]. Pulse field gel electrophoresis is a culture-independent approach that has been used to examine how diverse the genome sizes of the dominant members of virioplankton communities are. The studies have shown substantial ...
a2 - Molecular and Cell Biology
... or of the genes in item 2, but active. Whichever genes are contained in copy #3 determines the mating type. ...
... or of the genes in item 2, but active. Whichever genes are contained in copy #3 determines the mating type. ...
Obesity - PHG Foundation
... a greatly increased drive to eat and consume far more energy than individuals without these mutations. To date, eight genes and one large deletion have been implicated in monogenic disorders in which obesity is the primary feature. These gene discoveries have contributed to our understanding of the ...
... a greatly increased drive to eat and consume far more energy than individuals without these mutations. To date, eight genes and one large deletion have been implicated in monogenic disorders in which obesity is the primary feature. These gene discoveries have contributed to our understanding of the ...
Unit 3
... If crossing over occurs randomly then probability of crossing over directly proportional to distance between genes 3. Describe sex determination in humans. The 23rd pair of chromosome determines the sex of the offspring. The father usually determines the sex of the baby. The mother is X X while the ...
... If crossing over occurs randomly then probability of crossing over directly proportional to distance between genes 3. Describe sex determination in humans. The 23rd pair of chromosome determines the sex of the offspring. The father usually determines the sex of the baby. The mother is X X while the ...
Interacting Gene Clusters and the Evolution of the Vertebrate
... Interacting Gene Clusters and the Evolution of the Vertebrate Immune System Takashi Makino and Aoife McLysaght Smurfit Institute of Genetics, University of Dublin, Trinity College, Dublin, Ireland Unraveling the ‘‘code’’ of genome structure is an important goal of genomics research. Colocalization o ...
... Interacting Gene Clusters and the Evolution of the Vertebrate Immune System Takashi Makino and Aoife McLysaght Smurfit Institute of Genetics, University of Dublin, Trinity College, Dublin, Ireland Unraveling the ‘‘code’’ of genome structure is an important goal of genomics research. Colocalization o ...
Human Pedigrees
... – Include at least 3 generations of family members – Although “marriage lines” typically are only used for couples that have had children, you may use them to show any married or unmarried couples that are part of the family, regardless if they have had children together or not. Hint: When you dra ...
... – Include at least 3 generations of family members – Although “marriage lines” typically are only used for couples that have had children, you may use them to show any married or unmarried couples that are part of the family, regardless if they have had children together or not. Hint: When you dra ...
Dermatoglyphic changes during the population admixture between
... Dermatoglyphics, highly heritable (Zhang, 2007) and derived from the hypodermal neural system (Albers and Davis, 2007), is a pattern of skin ridges that enhances tactile sensation, especially prevalent in primates (Li et al., 2001). Due to the complex appearances of the dermatoglyphic traits, e.g. a ...
... Dermatoglyphics, highly heritable (Zhang, 2007) and derived from the hypodermal neural system (Albers and Davis, 2007), is a pattern of skin ridges that enhances tactile sensation, especially prevalent in primates (Li et al., 2001). Due to the complex appearances of the dermatoglyphic traits, e.g. a ...