Definition of gene sets - Weizmann Institute of Science
... Inparanoid (2) was used to identify the orthologues of each species with S. cerevisiae and the genomic sequences were used to retrieve the 600bp upstream of each gene. Only one-to-one orthologues were used in this analysis. Data processing for Signature Algorithm Expression data were normalized as d ...
... Inparanoid (2) was used to identify the orthologues of each species with S. cerevisiae and the genomic sequences were used to retrieve the 600bp upstream of each gene. Only one-to-one orthologues were used in this analysis. Data processing for Signature Algorithm Expression data were normalized as d ...
The role of testis-specific gene expression in sex
... In light of these findings, we have re-examined the relationship between Anopheles retrogene duplications and male-related gene expression (Suppl. File 1 for methods). Using recent orthology assignments (VILLELLA et al., 2009), and in agreement with Toups and Hahn (2010), we observe an excess of ret ...
... In light of these findings, we have re-examined the relationship between Anopheles retrogene duplications and male-related gene expression (Suppl. File 1 for methods). Using recent orthology assignments (VILLELLA et al., 2009), and in agreement with Toups and Hahn (2010), we observe an excess of ret ...
chapter 9 lifespan development
... relationships and getting married later than before early 1800s, women were expected to marry by 16 or 17, if not they were called a spinster if they were not married by 19 considered old by then and parents worried if they would ever find someone who would marry someone so old the men who married t ...
... relationships and getting married later than before early 1800s, women were expected to marry by 16 or 17, if not they were called a spinster if they were not married by 19 considered old by then and parents worried if they would ever find someone who would marry someone so old the men who married t ...
aidong - Data Systems Group
... as a cluster, and organizes the cluster structure of a data set into a hierarchical tree. caculate the density of each data object based on its neighboring data distribution. construct the "attraction" relationship between data objects according to object density. organize the attraction relation ...
... as a cluster, and organizes the cluster structure of a data set into a hierarchical tree. caculate the density of each data object based on its neighboring data distribution. construct the "attraction" relationship between data objects according to object density. organize the attraction relation ...
Sex Linked Traits
... Sex Linked Traits • When X and Y chromosomes meet at fertilization, each sex-linked gene on the X chromosome (whether recessive or dominant) becomes expressed in the phenotype. • This is because the Y chromosome does not possess alleles of any of these genes and cannot offer dominance to them. ...
... Sex Linked Traits • When X and Y chromosomes meet at fertilization, each sex-linked gene on the X chromosome (whether recessive or dominant) becomes expressed in the phenotype. • This is because the Y chromosome does not possess alleles of any of these genes and cannot offer dominance to them. ...
genes vs environment
... • However Tienari et al (1994) provide evidence of the diathesis stress model which encompasses both genes and environment. ...
... • However Tienari et al (1994) provide evidence of the diathesis stress model which encompasses both genes and environment. ...
Tri-I Bioinformatics Workshop: Public data and tool
... Records pulled and displayed by user preference ...
... Records pulled and displayed by user preference ...
1471-2164-12-165
... However, the gene model predicted by RGP track (P0030G11.20.spp) is different from others. (h) In indica chr10:13537529-13541502 area, the genes predicted by RAP (Os11t0237700-01), RGP (OSJNBb0023E20.8), BGF (BGIOSIBCE032114.1) and FgeneSH (BGIOSIFCE032530.1) are similar, and they are supported by E ...
... However, the gene model predicted by RGP track (P0030G11.20.spp) is different from others. (h) In indica chr10:13537529-13541502 area, the genes predicted by RAP (Os11t0237700-01), RGP (OSJNBb0023E20.8), BGF (BGIOSIBCE032114.1) and FgeneSH (BGIOSIFCE032530.1) are similar, and they are supported by E ...
Drosophila
... development, and so some genotypes may not appear among the progeny. • The example from the intro of this chapter the yellow coat and the allele for it • Yellow is dominant Y • Viable in heterozygous Yy ...
... development, and so some genotypes may not appear among the progeny. • The example from the intro of this chapter the yellow coat and the allele for it • Yellow is dominant Y • Viable in heterozygous Yy ...
Removing Unwanted Variation from High-Throughput Omic Data
... factors if its effect on gene expression is stronger than the subgroup effect. Note that similar problems arise when the objective is to combine several smaller studies. A very important objective is therefore to remove these UV factors without losing the factors of interest. The problem can be more ...
... factors if its effect on gene expression is stronger than the subgroup effect. Note that similar problems arise when the objective is to combine several smaller studies. A very important objective is therefore to remove these UV factors without losing the factors of interest. The problem can be more ...
Two trait Crosses
... Summary of Mendel’s Principles • Principle of Segregation – In most sexually reproducing organisms, each adult has two copies of each gene- one from each parent. These genes are segregated from each other when gametes are formed. • Principle of Independent Assortment – The alleles for different gen ...
... Summary of Mendel’s Principles • Principle of Segregation – In most sexually reproducing organisms, each adult has two copies of each gene- one from each parent. These genes are segregated from each other when gametes are formed. • Principle of Independent Assortment – The alleles for different gen ...
Genetics On a separate quiz fill in the blanks from the text below:
... which stated that all traits blend with each other, with the _________________ theory: 1. Inherited characters are determined by particular factors (today called _________________, which are located on DNA). 2. The particulate factors (genes) occur in _________________ (on maternal and paternal homo ...
... which stated that all traits blend with each other, with the _________________ theory: 1. Inherited characters are determined by particular factors (today called _________________, which are located on DNA). 2. The particulate factors (genes) occur in _________________ (on maternal and paternal homo ...
A Novel Interacting Protein With The DNA Mismatch Repair Gene
... We hypothesize that the clone construct interacts with and is inhibited by DN-mutated PMS2 resulting in increased levels of MSI and loss of DNA MMR function. We cloned Clone PMS2Interactor 1 through its interaction in the yeast two hybrid cloning assay with the N-terminus of PMS2, and it is known to ...
... We hypothesize that the clone construct interacts with and is inhibited by DN-mutated PMS2 resulting in increased levels of MSI and loss of DNA MMR function. We cloned Clone PMS2Interactor 1 through its interaction in the yeast two hybrid cloning assay with the N-terminus of PMS2, and it is known to ...
Integration of experimental evidence
... information posed the problem of identifying the proper function of a DNA methyltransferase encoded by the genome of a cyanobacterial phage. DNA methyltransferases are often associated with restriction endonucleases. Do phage also have endonucleases as well as methyltransferases? It’s just a passing ...
... information posed the problem of identifying the proper function of a DNA methyltransferase encoded by the genome of a cyanobacterial phage. DNA methyltransferases are often associated with restriction endonucleases. Do phage also have endonucleases as well as methyltransferases? It’s just a passing ...
Genes and Hearing Loss
... heterozygous parent has two types of the same gene (in this case, one mutated and the other normal) and can produce two types of gametes (reproductive cells). One gamete will carry the mutant form of the gene of interest, and the other the normal form. Each of these gametes then has an equal chance ...
... heterozygous parent has two types of the same gene (in this case, one mutated and the other normal) and can produce two types of gametes (reproductive cells). One gamete will carry the mutant form of the gene of interest, and the other the normal form. Each of these gametes then has an equal chance ...
Genomes 3/e
... Identify functional domain is another alternative Genes become different (low similarity) but contain conserved functional domain An example (left): tudor domain is conserved between fruit fly & human (RNA metabolism) Figure 5.19 Genomes 3 (© Garland Science 2007) ...
... Identify functional domain is another alternative Genes become different (low similarity) but contain conserved functional domain An example (left): tudor domain is conserved between fruit fly & human (RNA metabolism) Figure 5.19 Genomes 3 (© Garland Science 2007) ...
Expert meeting: David Clayton
... 2/ Gene expression part (presented by Koen Herten and Sofie Derycke): - We have performed RNAseq analysis (Quantseq 3’ from Lexogen) on 60 samples from control females of O. nasuta and O. ventralis. - reads: 50-55% of the reads map to the tilapia genome, only 12-17% maps in gene regions => for each ...
... 2/ Gene expression part (presented by Koen Herten and Sofie Derycke): - We have performed RNAseq analysis (Quantseq 3’ from Lexogen) on 60 samples from control females of O. nasuta and O. ventralis. - reads: 50-55% of the reads map to the tilapia genome, only 12-17% maps in gene regions => for each ...
DNA Methylation
... DNA Methylation • DNA methylation, the addition of methyl groups to certain bases in DNA, is associated with reduced transcription in some species • DNA methylation can cause long-term inactivation of genes in cellular differentiation • In genomic imprinting, methylation regulates expression of eit ...
... DNA Methylation • DNA methylation, the addition of methyl groups to certain bases in DNA, is associated with reduced transcription in some species • DNA methylation can cause long-term inactivation of genes in cellular differentiation • In genomic imprinting, methylation regulates expression of eit ...
Q: What does “DNA” stand for? A: Deoxyribonucleic Acid Q: If an
... Q: What does a DNA molecule look like? A: DNA is made of two long strands of bases twisted around each other. It looks like a twisted ladder (a double helix). ...
... Q: What does a DNA molecule look like? A: DNA is made of two long strands of bases twisted around each other. It looks like a twisted ladder (a double helix). ...
TASSEL
... Recombination is the main force of elimination of linkage. Recombination events occur over many generations. Eliminated linkage between a mutated gene. Only very close markers are in LD with the mutated gene. ...
... Recombination is the main force of elimination of linkage. Recombination events occur over many generations. Eliminated linkage between a mutated gene. Only very close markers are in LD with the mutated gene. ...
Genetics ppt
... 3. Sometimes you can see “it” and sometimes you can’t see “it”. 4. If you can see it- it is dominant. 1. If it’s there and you can’t see itit’s recessive. ...
... 3. Sometimes you can see “it” and sometimes you can’t see “it”. 4. If you can see it- it is dominant. 1. If it’s there and you can’t see itit’s recessive. ...
Download paper (PDF format)
... how these affect transcript levels. Our ultimate goal is to estimate and understand the structure of this distribution. Most standard methods for analyzing gene expression focus on pairwise relations between genes, such as correlation. However, biological interaction is seldom this simple, and often ...
... how these affect transcript levels. Our ultimate goal is to estimate and understand the structure of this distribution. Most standard methods for analyzing gene expression focus on pairwise relations between genes, such as correlation. However, biological interaction is seldom this simple, and often ...
Gene expression profiling
In the field of molecular biology, gene expression profiling is the measurement of the activity (the expression) of thousands of genes at once, to create a global picture of cellular function. These profiles can, for example, distinguish between cells that are actively dividing, or show how the cells react to a particular treatment. Many experiments of this sort measure an entire genome simultaneously, that is, every gene present in a particular cell.DNA microarray technology measures the relative activity of previously identified target genes. Sequence based techniques, like serial analysis of gene expression (SAGE, SuperSAGE) are also used for gene expression profiling. SuperSAGE is especially accurate and can measure any active gene, not just a predefined set. The advent of next-generation sequencing has made sequence based expression analysis an increasingly popular, ""digital"" alternative to microarrays called RNA-Seq. However, microarrays are far more common, accounting for 17,000 PubMed articles by 2006.