A program for annotating and predicting the effects of single
... We describe a new computer program, SnpEff, for rapidly categorizing the effects of single nucleotide polymorphisms (SNPs) and other variants such as multiple nucleotide polymorphism (MNPs) and insertion-deletions (InDels), in whole genome sequences. Once a genome is sequenced, the SnpEff program ca ...
... We describe a new computer program, SnpEff, for rapidly categorizing the effects of single nucleotide polymorphisms (SNPs) and other variants such as multiple nucleotide polymorphism (MNPs) and insertion-deletions (InDels), in whole genome sequences. Once a genome is sequenced, the SnpEff program ca ...
PDF
... These compounds severely reduced or, in the case of FU, completely prevented further bud initiation. In contrast, the main outgrowth and elongation of the bud was unaffected even by continuous treatments at the above concentrations, so that initiated buds always developed the normal tubular appearan ...
... These compounds severely reduced or, in the case of FU, completely prevented further bud initiation. In contrast, the main outgrowth and elongation of the bud was unaffected even by continuous treatments at the above concentrations, so that initiated buds always developed the normal tubular appearan ...
Heredity Notes
... – Females that have the gene on one chromosome are not colorblind. The normal allele is dominant over the colorblindness allele. They are “carriers.” – Females have two X chromosomes, so they are colorblind only when trait is on both chromosomes. – Males have only one X, so they are colorblind when ...
... – Females that have the gene on one chromosome are not colorblind. The normal allele is dominant over the colorblindness allele. They are “carriers.” – Females have two X chromosomes, so they are colorblind only when trait is on both chromosomes. – Males have only one X, so they are colorblind when ...
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... [5], providing the opportunity to compare the mouse and human genomes. Comparing the human genome with the mouse genome can greatly help our understanding of both genomes. We used the BLASTN program [6] to compare the December 2001 golden path freeze of the human genome, which is also NCBI build 28, ...
... [5], providing the opportunity to compare the mouse and human genomes. Comparing the human genome with the mouse genome can greatly help our understanding of both genomes. We used the BLASTN program [6] to compare the December 2001 golden path freeze of the human genome, which is also NCBI build 28, ...
Lecture 8: Gene Finding by Computational Analysis Outline 1
... TTT) bias in coding vs non-coding regions • Relative freq of a dicodon in coding vs non-coding – Freq of dicodon X (e.g, AAA AAA) in coding region = total number of occurrences of X divided by total number of dicodon occurrences – Freq of dicodon X (e.g, AAA AAA) in noncoding region = total number o ...
... TTT) bias in coding vs non-coding regions • Relative freq of a dicodon in coding vs non-coding – Freq of dicodon X (e.g, AAA AAA) in coding region = total number of occurrences of X divided by total number of dicodon occurrences – Freq of dicodon X (e.g, AAA AAA) in noncoding region = total number o ...
Role of 1-aminocyclopropane-1-carboxylate (ACC) Synthases
... Using either probes or primers developed from Arabidopsis genes involved in signal transduction pathway, several research groups have isolated components of the ethylene signal pathway from a number of ornamental plant species, such as ethylene receptors from roses (Müller 2000a, 2000b, 2002, 2003), ...
... Using either probes or primers developed from Arabidopsis genes involved in signal transduction pathway, several research groups have isolated components of the ethylene signal pathway from a number of ornamental plant species, such as ethylene receptors from roses (Müller 2000a, 2000b, 2002, 2003), ...
to Sample Chapter
... Genetics is the study of heredity and variations. All living organisms inherit characters to next generation. This theory regarding inheritance was given by Gregor Johann Mendel in 1866. Mendel performed experiments on garden pea and made a conclusion that genes come in pairs and inherited as distin ...
... Genetics is the study of heredity and variations. All living organisms inherit characters to next generation. This theory regarding inheritance was given by Gregor Johann Mendel in 1866. Mendel performed experiments on garden pea and made a conclusion that genes come in pairs and inherited as distin ...
Ira Herskowitz: 1946-2003.
... time, a regulatory site in the prophage where the product of the Q gene of the superinfecting phage must act to induce the late genes. Ira found that the site was adjacent to the Q gene, but that deletion of the prophage Q gene (along with the entire left side of the prophage, including the promoter ...
... time, a regulatory site in the prophage where the product of the Q gene of the superinfecting phage must act to induce the late genes. Ira found that the site was adjacent to the Q gene, but that deletion of the prophage Q gene (along with the entire left side of the prophage, including the promoter ...
Chapter 10
... Now recall the results of Mendel’s cross between F 1 tall plants, when the trait of shortness reappeared. To explain this result, Mendel formulated the first of his two laws of heredity. He concluded that each tall plant in the F 1 generation carried one dominant allele for tallness and one unexpres ...
... Now recall the results of Mendel’s cross between F 1 tall plants, when the trait of shortness reappeared. To explain this result, Mendel formulated the first of his two laws of heredity. He concluded that each tall plant in the F 1 generation carried one dominant allele for tallness and one unexpres ...
A natural recessive resistance gene against potato virus
... Other types of genetic resistance include virus resistance genes that are not associated with HR or ER (Fraser, 1990). The two dominant genes RTM1 and RTM2, involved in restriction of long-distance movement of tobacco etch virus (TEV) in Arabidopsis thaliana fall into this class (Chisholm et al., 20 ...
... Other types of genetic resistance include virus resistance genes that are not associated with HR or ER (Fraser, 1990). The two dominant genes RTM1 and RTM2, involved in restriction of long-distance movement of tobacco etch virus (TEV) in Arabidopsis thaliana fall into this class (Chisholm et al., 20 ...
Meiosis in Animals - Exercise 13
... constant within members of a species from generation to generation, there must be a reduction of chromosomes number in each generation to offset the increase at fertilization. In a normal somatic cell of an organism, there are actually two complete sets of chromosomes. For each chromosome, there is ...
... constant within members of a species from generation to generation, there must be a reduction of chromosomes number in each generation to offset the increase at fertilization. In a normal somatic cell of an organism, there are actually two complete sets of chromosomes. For each chromosome, there is ...
BPA leaflet testing and inheritance
... someone with one of these almost certainly has a parent who has the faulty gene (and who is at risk of illness). Each of their children has a 50:50 chance of inheriting it. The gene only makes about 1 in 5 people ill, so many people have no idea that they have it. We don’t yet know the reasons for t ...
... someone with one of these almost certainly has a parent who has the faulty gene (and who is at risk of illness). Each of their children has a 50:50 chance of inheriting it. The gene only makes about 1 in 5 people ill, so many people have no idea that they have it. We don’t yet know the reasons for t ...
Small Nucleolar RNA
... snoRNAs can be used as a biological tool • (1) snoRNA localization elements have been utilized to direct new RNA sequences to the nucleolus • (2) snoRNAs have been used to direct nucleotide modifications to new sites in rRNA via the expression of snoRNAs containing novel guide sequences ...
... snoRNAs can be used as a biological tool • (1) snoRNA localization elements have been utilized to direct new RNA sequences to the nucleolus • (2) snoRNAs have been used to direct nucleotide modifications to new sites in rRNA via the expression of snoRNAs containing novel guide sequences ...
A GENETIC EXPLANATION OF HOW GPRA IS INHERITED
... result of the interaction of many genes. Modifying genes may influence how other genes are expressed. As mentioned above, a trait may be dominant, but with incomplete penetrance so that it is not always expressed. Epitasis occurs when alleles at one locus mask the action of another pair of alleles. ...
... result of the interaction of many genes. Modifying genes may influence how other genes are expressed. As mentioned above, a trait may be dominant, but with incomplete penetrance so that it is not always expressed. Epitasis occurs when alleles at one locus mask the action of another pair of alleles. ...
Bridging the gap between developmental systems theory and
... Many developmental structures are not stable and do not exist before ontogeny, but rather emerge from causal interactions in ontogenetic space and time. Note that there are both strong and weak versions of nonpreformationism: in the strong version, no developmental information whatever is preformed; ...
... Many developmental structures are not stable and do not exist before ontogeny, but rather emerge from causal interactions in ontogenetic space and time. Note that there are both strong and weak versions of nonpreformationism: in the strong version, no developmental information whatever is preformed; ...
Molecular approaches for bacterial azoreductases
... Azo dyes are the dominant types of synthetic dyes, widely used in textiles, foods, leather, printing, tattooing, cosmetics, and pharmaceutical industries. Many microorganisms are able to decolorize azo dyes, and there is increasing interest in biological waste treatment methods. Bacterial azoreducta ...
... Azo dyes are the dominant types of synthetic dyes, widely used in textiles, foods, leather, printing, tattooing, cosmetics, and pharmaceutical industries. Many microorganisms are able to decolorize azo dyes, and there is increasing interest in biological waste treatment methods. Bacterial azoreducta ...
DNA Methylation Analysis
... resolution focused on 144 established cancer genes that have shown differential methylation patterns. To ensure the most important loci were represented, Illumina designed markers to cover nearly 1,000 cancer-related genes described in published literature. Of all genes represented on the HumanMethy ...
... resolution focused on 144 established cancer genes that have shown differential methylation patterns. To ensure the most important loci were represented, Illumina designed markers to cover nearly 1,000 cancer-related genes described in published literature. Of all genes represented on the HumanMethy ...
Anhydrobiosis without trehalose in bdelloid rotifers
... state of suspended animation known as anhydrobiosis, which is thought to require accumulation of the non-reducing disaccharides trehalose (animals, fungi) and sucrose (plants), acting as water replacement molecules and vitrifying agents. We now show that clonal populations of bdelloid rotifers Philo ...
... state of suspended animation known as anhydrobiosis, which is thought to require accumulation of the non-reducing disaccharides trehalose (animals, fungi) and sucrose (plants), acting as water replacement molecules and vitrifying agents. We now show that clonal populations of bdelloid rotifers Philo ...
Pom-Pom_Genetics
... Yes, eye color is complicated. Not only are there three main colors, but there are many shades of those colors and some eyes have rings around the pupil while others have rays coming out from the iris (the black part). Much of this genetics has not been worked out. However, this much is known: eye c ...
... Yes, eye color is complicated. Not only are there three main colors, but there are many shades of those colors and some eyes have rings around the pupil while others have rays coming out from the iris (the black part). Much of this genetics has not been worked out. However, this much is known: eye c ...
Article PDF
... portions of the main histone proteins, protrude from the nucleosome particle and mediate interactions between proximal nucleosomes.12 Post-translational modifications of these tails, which alter their electrostatics, are among the primary mechanisms regulating chromatin folding.12,13 It was recently ...
... portions of the main histone proteins, protrude from the nucleosome particle and mediate interactions between proximal nucleosomes.12 Post-translational modifications of these tails, which alter their electrostatics, are among the primary mechanisms regulating chromatin folding.12,13 It was recently ...
Inheritance of White Colour in Alpacas
... This report describes the research conducted as part of the alpaca colour genetics project called “Inheritance of White colour in Alpacas: identifying the genes involved”. Three approaches were used (Mendelian, physical and genetic) in an attempt to unravel the mystery surrounding colour inheritance ...
... This report describes the research conducted as part of the alpaca colour genetics project called “Inheritance of White colour in Alpacas: identifying the genes involved”. Three approaches were used (Mendelian, physical and genetic) in an attempt to unravel the mystery surrounding colour inheritance ...
Gro and Eve co-regulate early boundaries - Development
... Fig. 1. A conserved Eve motif interacts with Gro. (A) Eve: the homeodomain (HD), transient assay-defined repression domain (TARD), which is Gro-independent, and the Gro interaction domain (GID, LFKPY) are shown, with corresponding amino acid numbers. The LFKPY region is conserved between Eve HD prot ...
... Fig. 1. A conserved Eve motif interacts with Gro. (A) Eve: the homeodomain (HD), transient assay-defined repression domain (TARD), which is Gro-independent, and the Gro interaction domain (GID, LFKPY) are shown, with corresponding amino acid numbers. The LFKPY region is conserved between Eve HD prot ...
HOM-C/Hox genes and four interacting loci
... interactions be established following precise cell recognition events. In such morphogenetic interactions, cells of a single overt cell type may not all act the same. Pattern forming mechanisms that generate non-equivalent cell properties thus play a crucial role in establishment of the form of the ...
... interactions be established following precise cell recognition events. In such morphogenetic interactions, cells of a single overt cell type may not all act the same. Pattern forming mechanisms that generate non-equivalent cell properties thus play a crucial role in establishment of the form of the ...