SSE – secondary structure element (ex. helices, sheets)
... max(match(a,b)^PdbIdb=P)( WArea(a,b) X WARatio(a,b) X WOrdinal(a,b) ) ] WFMCount is to compensate the effect that the large proteins being matched and scored more frequently than the small ones. WTerm is to add more weight to the query index terms that rarely occur in the database. ...
... max(match(a,b)^PdbIdb=P)( WArea(a,b) X WARatio(a,b) X WOrdinal(a,b) ) ] WFMCount is to compensate the effect that the large proteins being matched and scored more frequently than the small ones. WTerm is to add more weight to the query index terms that rarely occur in the database. ...
3D STRUCTURE VALIDATION
... not too many unusual side-chain conformations, or buried charges, residues are happy in their environment ...
... not too many unusual side-chain conformations, or buried charges, residues are happy in their environment ...
Whole Food Protein Preventing Muscle Loss
... age, and by 80s, only half the amount of muscles in 20s are left. As the muscle mass shrink, your strength diminishes, and the quality of life decreases. Also, fat replaces muscle and cause lifestyle disease. In order to prevent muscle loss, consuming protein everyday is important. ...
... age, and by 80s, only half the amount of muscles in 20s are left. As the muscle mass shrink, your strength diminishes, and the quality of life decreases. Also, fat replaces muscle and cause lifestyle disease. In order to prevent muscle loss, consuming protein everyday is important. ...
Periodic Table - personals.okan.edu.tr
... elements are more readily oxidized than hydrogen(Exception: Cu) • High catalytic activitity(ability to adsorb gaseous species, some important catalysts: Ni,Fe,Pt,Rh,V2O5,Cr2O3,MnO2,TiCl4 ...
... elements are more readily oxidized than hydrogen(Exception: Cu) • High catalytic activitity(ability to adsorb gaseous species, some important catalysts: Ni,Fe,Pt,Rh,V2O5,Cr2O3,MnO2,TiCl4 ...
A Thumbnail Review of Regents Chemistry
... Equilibrium SHIFTS AWAY FROM an increase in concentration or temperature (heat) Equilbrium SHIFTS TOWARDS a decrease in concentration or temperature (heat) When PRESSURE increases, equilibrium SHIFTS TOWARDS the side with fewer gas molecules ACIDS, BASES & SALTS Electrolytes (Acids, Bases and Salts) ...
... Equilibrium SHIFTS AWAY FROM an increase in concentration or temperature (heat) Equilbrium SHIFTS TOWARDS a decrease in concentration or temperature (heat) When PRESSURE increases, equilibrium SHIFTS TOWARDS the side with fewer gas molecules ACIDS, BASES & SALTS Electrolytes (Acids, Bases and Salts) ...
(1) Identify the secondary structure described in each of the
... the protein groups and water. What then accounts for the greater stability of the native conformation? (10) The sweet taste of freshly picked corn (maize) is due to the high level of sugar in the kernels. Store-bought corn (several days after picking) is not as sweet, because about 50% of the free s ...
... the protein groups and water. What then accounts for the greater stability of the native conformation? (10) The sweet taste of freshly picked corn (maize) is due to the high level of sugar in the kernels. Store-bought corn (several days after picking) is not as sweet, because about 50% of the free s ...
Bonding Objectives
... Introduction/Ionic Compounds I can explain the two reasons that atoms or molecules tend to form bonds. I can differentiate between ionic, polar covalent, and nonpolar covalent bonds and explain the location of electrons in each case. I can use electronegativity values to determine the type of ...
... Introduction/Ionic Compounds I can explain the two reasons that atoms or molecules tend to form bonds. I can differentiate between ionic, polar covalent, and nonpolar covalent bonds and explain the location of electrons in each case. I can use electronegativity values to determine the type of ...
CARBOXYL GROUPS The δ- and ε-carboxyl
... principal anionic groups in proteins. They are acidic groups with pK values usually between pH 4.5 and 5.0. They can be esterified under relatively mild conditions by reaction with one of several diazoacetate derivatives (see Section 7-1). However, only a relatively small number of the most reactive ...
... principal anionic groups in proteins. They are acidic groups with pK values usually between pH 4.5 and 5.0. They can be esterified under relatively mild conditions by reaction with one of several diazoacetate derivatives (see Section 7-1). However, only a relatively small number of the most reactive ...
Chapter 1 Structure and Bonding
... c) Coordination weakens C=C bond (137.5 pm, 1516 cm-1) compared to free ethylene (133.7 pm, 1623 cm-1) ...
... c) Coordination weakens C=C bond (137.5 pm, 1516 cm-1) compared to free ethylene (133.7 pm, 1623 cm-1) ...
Cell Biology
... Water, however, plays a particularly important role in delivering energy to the target molecule, thereby contributing to radiation effects. In addition to water and the macromolecules, some trace elements and inorganic salts are essential for proper metabolism. ...
... Water, however, plays a particularly important role in delivering energy to the target molecule, thereby contributing to radiation effects. In addition to water and the macromolecules, some trace elements and inorganic salts are essential for proper metabolism. ...
Cell Biology
... Water, however, plays a particularly important role in delivering energy to the target molecule, thereby contributing to radiation effects. In addition to water and the macromolecules, some trace elements and inorganic salts are essential for proper metabolism. ...
... Water, however, plays a particularly important role in delivering energy to the target molecule, thereby contributing to radiation effects. In addition to water and the macromolecules, some trace elements and inorganic salts are essential for proper metabolism. ...
Chapter 1 - TeacherWeb
... process, general understanding of each process, number of ATP & product at each stage produced by 1 glucose molecule Role of NAD+, FAD, Coenzyme A Similarities and differences between aerobic cellular respiration, anaerobic lactic acid (lactate) production, anaerobic alcohol production, general reac ...
... process, general understanding of each process, number of ATP & product at each stage produced by 1 glucose molecule Role of NAD+, FAD, Coenzyme A Similarities and differences between aerobic cellular respiration, anaerobic lactic acid (lactate) production, anaerobic alcohol production, general reac ...
View/Open - Oregon State University
... 1. Proteins that bind to DNA often have common structural features. (Common structural features shared between proteins are called domains) Many of them have a feature known as a 'zinc finger,' A zinc finger arises from zinc interacting with cysteine and histidine, causing a portion of the polypepti ...
... 1. Proteins that bind to DNA often have common structural features. (Common structural features shared between proteins are called domains) Many of them have a feature known as a 'zinc finger,' A zinc finger arises from zinc interacting with cysteine and histidine, causing a portion of the polypepti ...
chem1b_ch23 lect - Santa Rosa Junior College
... nature of the ligands. If there are different ligands that can be placed in different positions relative to each other, geometric (cis-trans) isomerism occurs. Then we see whether the mirror image of an isomer is superimposable on the original. If it is not, optical isomerism also occurs. ...
... nature of the ligands. If there are different ligands that can be placed in different positions relative to each other, geometric (cis-trans) isomerism occurs. Then we see whether the mirror image of an isomer is superimposable on the original. If it is not, optical isomerism also occurs. ...
Transition metal chemistry
... Transition metal ions have variable oxidation state Electron configurations ...
... Transition metal ions have variable oxidation state Electron configurations ...
Chemistry - Target Publications
... of the same cell when filled with 0.02 M KCl solution is 520 ohms, calculate the conductivity and molar conductivity of 0.02 M KCl solution. [Given: Conductivity of 0.1 M KCl solution is 1.29 S m−1.] iv. Ammonia and oxygen react at high temperature as: 4NH3(g) + 5O2(g) → 4NO(g) + 6H2O(g) In an expe ...
... of the same cell when filled with 0.02 M KCl solution is 520 ohms, calculate the conductivity and molar conductivity of 0.02 M KCl solution. [Given: Conductivity of 0.1 M KCl solution is 1.29 S m−1.] iv. Ammonia and oxygen react at high temperature as: 4NH3(g) + 5O2(g) → 4NO(g) + 6H2O(g) In an expe ...
AP CHEMISTRY. We`re Bonding! page 1 of 5 1. A central atom
... AP CHEMISTRY. We’re Bonding! page 1 of 5 1. A central atom bonded to two other atoms and having no lone electron pairs would be expected to have a bond angle of a) 90o b) 120o c) 109o d) 180o e) 60o 2. Which set consists entirely of molecules that would exhibit no hydrogen bonding? a) PH3 , HCl, N2H ...
... AP CHEMISTRY. We’re Bonding! page 1 of 5 1. A central atom bonded to two other atoms and having no lone electron pairs would be expected to have a bond angle of a) 90o b) 120o c) 109o d) 180o e) 60o 2. Which set consists entirely of molecules that would exhibit no hydrogen bonding? a) PH3 , HCl, N2H ...
Say It With DNA - District 196 e
... symbol that corresponds to the amino acid in the protein synthesis chart. ! Step 6:! Write the "secret message". Definitions: ! DNA triplet-! Sequence of three nucleotides that codes for the synthesis of a specific ...
... symbol that corresponds to the amino acid in the protein synthesis chart. ! Step 6:! Write the "secret message". Definitions: ! DNA triplet-! Sequence of three nucleotides that codes for the synthesis of a specific ...
2016-2017 Summer Assignment AP Chem 2017 Summer
... Write the balanced chemical equation for this reaction. How many liters of sulfur dioxide would be produced from 4.0 l of Oxygen? Assume 100% yield and that all gases are measured at the same temperature and pressure. ...
... Write the balanced chemical equation for this reaction. How many liters of sulfur dioxide would be produced from 4.0 l of Oxygen? Assume 100% yield and that all gases are measured at the same temperature and pressure. ...
Protein structure prediction Haixu Tang School of Informatics
... are based on neural networks. The overall idea is that neural networks can be trained to recognize amino acid patterns in known secondary structure units, and to use these patterns to distinguish between the different types of secondary structure. Neural networks classify “input vectors” or “example ...
... are based on neural networks. The overall idea is that neural networks can be trained to recognize amino acid patterns in known secondary structure units, and to use these patterns to distinguish between the different types of secondary structure. Neural networks classify “input vectors” or “example ...
Types of Protein Hydrolysis
... mixture of min of 3 similar proteins (-, - & casein) 80% of protein present in milk contains the essential amino acids (V P H MATILL) isolated at isoelectric pH (pI), least soluble (isoelectric precipitation) accomplished by addition of dilute acid net charge at pI=0 ...
... mixture of min of 3 similar proteins (-, - & casein) 80% of protein present in milk contains the essential amino acids (V P H MATILL) isolated at isoelectric pH (pI), least soluble (isoelectric precipitation) accomplished by addition of dilute acid net charge at pI=0 ...
Enzymes - Solon City Schools
... a. SALT: The salt ions interfere with some of the chemical bonds that maintain protein structure b. pH: The same is true of the extra hydrogen ions at very low pH 1. Optimal pH for most enzymes near neutral ...
... a. SALT: The salt ions interfere with some of the chemical bonds that maintain protein structure b. pH: The same is true of the extra hydrogen ions at very low pH 1. Optimal pH for most enzymes near neutral ...
Metalloprotein
Metalloprotein is a generic term for a protein that contains a metal ion cofactor. A large number of all proteins are part of this category.