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Binding Protein HU has a Regulatory Role in the Acid Stress
Binding Protein HU has a Regulatory Role in the Acid Stress

Agarose Gel Electrophoresis
Agarose Gel Electrophoresis

... commonly incorporated into the gel and running buffer. The dye reduces the mobility of linear duplexes (Fig. 10.4.2D) and has a particularly pronounced effect on the mobility of closed circular DNA. Ethidium bromide changes the superhelical density of closed circular molecules by inducing positive s ...
A MULTI-STAGE MODEL FOR QUANTITATIVE PCR Emily Stone
A MULTI-STAGE MODEL FOR QUANTITATIVE PCR Emily Stone

Study Notes
Study Notes

Lecture 27
Lecture 27

... In mammals, found in the liver and small intestine mucosa XO is a homodimer with FAD, two [2Fe-2S] clusters and a molybdopterin complex (Mo-pt) that cycles between Mol (VI) and Mol (IV) oxidation states. Final electron acceptor is O2 which is converted to H2O2 XO is cleaved into 3 segments. The uncl ...
DNA Analysis is our Ally
DNA Analysis is our Ally

...  ABO-compatible mother and brother are expected to be suitable donors  DNA sequencing revealed compatible donors that would have been considered unsuitable based only on RBC testing with anti-Jka/Jkb ...
Lec 15: Nitrogen in biochemistry
Lec 15: Nitrogen in biochemistry

... • Production of additional cell walls • Glycolipid to form hydrophobic barrier • Degradation of photosystem II • Formation of leghemoglobin in Rhizobium • A protein to bind O2 and bring it to respiration chain • Increased respiratory activity around cell membrane • This facilitates utilization/reduc ...
IOSR Journal of Pharmacy and Biological Sciences (IOSR-JPBS) e-ISSN: 2278-3008.
IOSR Journal of Pharmacy and Biological Sciences (IOSR-JPBS) e-ISSN: 2278-3008.

... hydrolases whereas most of the plant chitinases and some bacterial chitinases belong to family 19 glycosyl hydrolases [1, 2]. It is interesting to note that the family 19 chitinases have no sequence similarity to family 18 chitinases and are not inhibited by allosamidin. Recently, chitinases have re ...
Full-Length 16S Amplification, SMRTbell™ Library Preparation and
Full-Length 16S Amplification, SMRTbell™ Library Preparation and

Exam 2, Fall 2006
Exam 2, Fall 2006

... A.) the two strands of the DNA are arranged in opposite orientation from one another B.) the distance between the strands of the helix is uniform C.) nucleotides within one strand can be arranged in any order D.) the two strands of the helix are held together by covalent bonds E.) the purines form h ...
Ch 6 Powerpoint
Ch 6 Powerpoint

...  Males are more likely to express recessive X-linked traits than females due to carrying only 1 X.  Females are less likely to express X-linked traits since they have to have 2 copies of the bad X’s. © 2013 Pearson Education, Inc. ...
Fluoroquinolones
Fluoroquinolones

... Fluoroquinolones • Mechanism of action – Block bacterial DNA synthesis by inhibiting bacterial topoisomerase II (DNA gyrase) and topoisomerase IV • Inhibition of DNA gyrase prevents the relaxation of positively supercoiled DNA that is required for normal transcription and replication • Inhibition ...
How Enzymes Work Enzymes
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... change ...
RNA PCR Kit (AMV)
RNA PCR Kit (AMV)

... amplify RNA. However, synthesis of cDNA from RNA using reverse transcriptase enables to apply PCR process to the RNA analysis. Many reports of various fields have been made by applying this method, such as of structual analysis of RNA, efficient cDNA cloning, analysis of gene expression at the RNA l ...
Gene discovery within the planctomycete division of the domain
Gene discovery within the planctomycete division of the domain

... comparison of individual clone nucleotide sequence translated in all reading frames against protein-sequence databases using the BLASTX algorithm (Tables 1,2). Only sequence matches with expected (e) values below E-4 (as determined by BLASTX) were considered to be significant [33] and are presented ...
Chapter 17
Chapter 17

... In 1941, American geneticists Beadle and Tatum proposed the “one gene, one enzyme” hypothesis, which states that each gene codes for an enzyme ...
lecture 06 - loss of Hg, founder events
lecture 06 - loss of Hg, founder events

... zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae zuleicae ...
Chromosomes - WordPress.com
Chromosomes - WordPress.com

... puffs and DNase I sensitivity? In both cases, the chromatin relaxes; histones loosen their grip on the DNA. One process that appears to be implicated in changing chromatin structure is acetylation, a reaction that adds chemical groups called acetyls to the histone proteins. Enzymes called acetyltran ...
Malignant Hyperthermia: Investigation for the Uninitiated
Malignant Hyperthermia: Investigation for the Uninitiated

... known or occult neuromuscular diseases other than MH. IVCT for this subgroup of patients is considered to be non-specific.13. The problem with MHE The single biggest “thorn in the side” of the IVCT is the MHE result. It remains uncertain what this result means in terms of real clinical risk. While e ...
Doc-Help - MB DNA Analysis
Doc-Help - MB DNA Analysis

... 2. Possibility. You can add DNA sequence first and then use “Sequence Translator” from “Extras” Menu to get amino acid sequence in MB format (*.ami file) 3. Possibility. Add sequence file manually (supply it with *.ami file extension, because in that case it can be detected by the program). The file ...
120103Total2ndSemester
120103Total2ndSemester

... in landfills to fossils? What can each tell us about the past? 8. Explain the geological principle of faunal succession. 9. Give an example from Chapter 2 that illustrates how mutations can and have benefitted an organism and increased its likelihood for survival. 10. Evolutionary theory has invoked ...
Structural Basis of Perturbed pKa Values of Catalytic Groups in
Structural Basis of Perturbed pKa Values of Catalytic Groups in

... their state of protonation, and the state of protonation is determined, at first approximation, by the intrinsic pK a of the given group. Table 1 lists the intrinsic pK a values of the catalytic groups found in either protein or RNA enzymes. For these groups to be activated as nucleophiles, the ioni ...
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... involved into formation of the whole organism body. •Motor proteins. These proteins can convert chemical energy into mechanical energy. actin and myosin are responsible for muscular motion. •Receptors These proteins are responsible for signal detection and translation into other type of signal. •Sig ...
unit3_lesson10_translation1_markscheme
unit3_lesson10_translation1_markscheme

The Nobel Prize in Chemistry 2006 I
The Nobel Prize in Chemistry 2006 I

... within this group of organisms. All the cells of the body contain the same genetic information, but there is great variation between organs in the information that is actually transcribed, and thereby translated into protein production. Knowledge about the transcription process is also fundamental f ...
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Deoxyribozyme



Deoxyribozymes, also called DNA enzymes, DNAzymes, or catalytic DNA, are DNA oligonucleotides that are capable of catalyzing specific chemical reactions, similar to the action of other biological enzymes, such as proteins or ribozymes (enzymes composed of RNA).However, in contrast to the abundance of protein enzymes in biological systems and the discovery of biological ribozymes in the 1980s,there are no known naturally occurring deoxyribozymes.Deoxyribozymes should not be confused with DNA aptamers which are oligonucleotides that selectively bind a target ligand, but do not catalyze a subsequent chemical reaction.With the exception of ribozymes, nucleic acid molecules within cells primarily serve as storage of genetic information due to its ability to form complementary base pairs, which allows for high-fidelity copying and transfer of genetic information. In contrast, nucleic acid molecules are more limited in their catalytic ability, in comparison to protein enzymes, to just three types of interactions: hydrogen bonding, pi stacking, and metal-ion coordination. This is due to the limited number of functional groups of the nucleic acid monomers: while proteins are built from up to twenty different amino acids with various functional groups, nucleic acids are built from just four chemically similar nucleobases. In addition, DNA lacks the 2'-hydroxyl group found in RNA which limits the catalytic competency of deoxyribozymes even in comparison to ribozymes.In addition to the inherent inferiority of DNA catalytic activity, the apparent lack of naturally occurring deoxyribozymes may also be due to the primarily double-stranded conformation of DNA in biological systems which would limit its physical flexibility and ability to form tertiary structures, and so would drastically limit the ability of double-stranded DNA to act as a catalyst; though there are a few known instances of biological single-stranded DNA such as multicopy single-stranded DNA (msDNA), certain viral genomes, and the replication fork formed during DNA replication. Further structural differences between DNA and RNA may also play a role in the lack of biological deoxyribozymes, such as the additional methyl group of the DNA base thymidine compared to the RNA base uracil or the tendency of DNA to adopt the B-form helix while RNA tends to adopt the A-form helix. However, it has also been shown that DNA can form structures that RNA cannot, which suggests that, though there are differences in structures that each can form, neither is inherently more or less catalytic due to their possible structural motifs.
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