Week 3
... one side, and amine group (containing nitrogen) on another side, a hydrogen in the third bonding position, and finally a variable “side group” which is the only thing that varies from one amino acid to another. Amino acids are strung together into chains via “peptide bonds”. The order of amino acids ...
... one side, and amine group (containing nitrogen) on another side, a hydrogen in the third bonding position, and finally a variable “side group” which is the only thing that varies from one amino acid to another. Amino acids are strung together into chains via “peptide bonds”. The order of amino acids ...
amino acid letter codes
... 3. ALIPHATIC: The hydrophobic and polar amino acids get all the attention, but there is something to be said for the "normal" amino acids, which simply have their first letter as the one letter code. They are "pretty good cats": PG CATS P pro ...
... 3. ALIPHATIC: The hydrophobic and polar amino acids get all the attention, but there is something to be said for the "normal" amino acids, which simply have their first letter as the one letter code. They are "pretty good cats": PG CATS P pro ...
Key concepts_Protein processing and modification
... this requires directed transport across membranes. Transport of proteins across membranes, known as translocation, utilizes multiprotein complexes called translocons. A number of different mechanisms are employed in bacteria and eukaryotes. In particular, proteins can be translocated either directly ...
... this requires directed transport across membranes. Transport of proteins across membranes, known as translocation, utilizes multiprotein complexes called translocons. A number of different mechanisms are employed in bacteria and eukaryotes. In particular, proteins can be translocated either directly ...
Proteins: Primary Structure
... (C,H,O & N) each group needs 16 single bonds, 4 double bonds, 4 Carbon, 2 ...
... (C,H,O & N) each group needs 16 single bonds, 4 double bonds, 4 Carbon, 2 ...
Lecture 6
... Protein structure and domain a. Each amino acid can form different set of bonds ionic, hydrophobic, hydrogen, sulfur b. Order of amino acids is specific to a protein c. First degree to fourth degree orders d. Overall shape of protein derived from first degree order of amino acids e. As a result, s ...
... Protein structure and domain a. Each amino acid can form different set of bonds ionic, hydrophobic, hydrogen, sulfur b. Order of amino acids is specific to a protein c. First degree to fourth degree orders d. Overall shape of protein derived from first degree order of amino acids e. As a result, s ...
The Chemical Building Blocks of Life
... • 1. Nonpolar amino acids have R groups that contain CH2 or CH3 • 2. Polar uncharged AA’s have R goups that contain oxygen or only H • 3. Charged AA’s have R goups that contain acids or bases ex HCL or NAOH • 4. Aromatic AA’s have R groups that contain an organic carbon ring • 5. Special Function AA ...
... • 1. Nonpolar amino acids have R groups that contain CH2 or CH3 • 2. Polar uncharged AA’s have R goups that contain oxygen or only H • 3. Charged AA’s have R goups that contain acids or bases ex HCL or NAOH • 4. Aromatic AA’s have R groups that contain an organic carbon ring • 5. Special Function AA ...
Biomolecule/Chemistry Flashcards- KEY - mvhs
... Unsaturated Fatty Acid- Contains at least one C-C double or triple bond. The bent shape (from these bonds) decreases the number of van der Waal’s forces between fatty acids. ...
... Unsaturated Fatty Acid- Contains at least one C-C double or triple bond. The bent shape (from these bonds) decreases the number of van der Waal’s forces between fatty acids. ...
9 Week
... Complete proteins are proteins that can provide all the essential AA. Animal proteins are usually complete proteins. Incomplete proteins are proteins that are deficient in one essential AA. Plant proteins are usually incomplete. However a complete protein diet can be achieved by combining two differ ...
... Complete proteins are proteins that can provide all the essential AA. Animal proteins are usually complete proteins. Incomplete proteins are proteins that are deficient in one essential AA. Plant proteins are usually incomplete. However a complete protein diet can be achieved by combining two differ ...
Translation (Protein Synthesis)
... • tRNA with the complementary anticodon carries amino acid (a.a.) to bind to the codon ...
... • tRNA with the complementary anticodon carries amino acid (a.a.) to bind to the codon ...
... Brief history of bioinformatics: Databases • The first biological database - Protein Identification Resource was established in 1972 by Margaret Dayhoff • Dayhoff and co-workers organized the proteins into families and superfamilies based on degree of sequence similarity • Idea of sequence alignmen ...
NAME
... 1. Check with the other groups in the class. What other variants of the gene exist? How similar or dissimilar were their DNA sequence? ...
... 1. Check with the other groups in the class. What other variants of the gene exist? How similar or dissimilar were their DNA sequence? ...
Rice Krispie Treats
... 1. Check with the other groups in the class. What other variants of the gene exist? How similar or dissimilar were their DNA sequence? ...
... 1. Check with the other groups in the class. What other variants of the gene exist? How similar or dissimilar were their DNA sequence? ...
Classwork - Biomonsters
... • Label A, T, C, and Gs • Label the 5’ and 3’ ends of each DNA strand ...
... • Label A, T, C, and Gs • Label the 5’ and 3’ ends of each DNA strand ...
Survey of Protein Structure Prediction Methods
... Compile a profile for the sequence, compare this profile to other known profiles Allows for prediction of structures, even when sequence is not close Use of metaservers to find consensus structures between CASP4 and CASP5 has led to improved accuracy ...
... Compile a profile for the sequence, compare this profile to other known profiles Allows for prediction of structures, even when sequence is not close Use of metaservers to find consensus structures between CASP4 and CASP5 has led to improved accuracy ...
Amino Acids
... Organic compounds with amino and carboxylate functional groups Each AA has unique side chain (R) attached to alpha (α) carbon Crystalline solids with high MP’s Highly-soluble in water Exist as dipolar, charged zwitterions (ionic form) Exist as either L- or D- enantiomers Almost without exception, bi ...
... Organic compounds with amino and carboxylate functional groups Each AA has unique side chain (R) attached to alpha (α) carbon Crystalline solids with high MP’s Highly-soluble in water Exist as dipolar, charged zwitterions (ionic form) Exist as either L- or D- enantiomers Almost without exception, bi ...
Polypeptides and Proteins
... tissue, bones). Globular: soluble or colloidal in water, eg, hemoglobin, enzymes, antibodies, some hormones. ...
... tissue, bones). Globular: soluble or colloidal in water, eg, hemoglobin, enzymes, antibodies, some hormones. ...
Organic Biomolecules Fill in Notes 2016
... • Only contain the elements carbon, hydrogen, and oxygen in a specific ratio of 1:2:1 Example: formula for glucose is C6H12O6 ...
... • Only contain the elements carbon, hydrogen, and oxygen in a specific ratio of 1:2:1 Example: formula for glucose is C6H12O6 ...
An Introduction to Protein Structure Databases
... and orientation (no connectivities between the secondary structures) Topology (FOLD family): overall shape and connectivities. Homologous superfamily: proteins are thought to share common ancestor. Similarities by sequence alignment and then by structure comparison using the SSAP structural align ...
... and orientation (no connectivities between the secondary structures) Topology (FOLD family): overall shape and connectivities. Homologous superfamily: proteins are thought to share common ancestor. Similarities by sequence alignment and then by structure comparison using the SSAP structural align ...
Mountain Glacier Melt to Contribute 12 Centimeters to World Sea
... mountain glaciers and ice caps will contribute about 12 centimetres to world sea-level increases by 2100, according to UBC research published this week in Nature Geoscience. ...
... mountain glaciers and ice caps will contribute about 12 centimetres to world sea-level increases by 2100, according to UBC research published this week in Nature Geoscience. ...
Chapter 5 - Richsingiser.com
... anticancer activity. Determine the sequence of the peptide from the following information. 1. One cycle fo Edman degradation of intact FP yields 2 mole of PTH-aspartate per mole of FP. 2. Treatment of a solution of FP with 2-ME followed by the addition of trypsin yields three peptides ...
... anticancer activity. Determine the sequence of the peptide from the following information. 1. One cycle fo Edman degradation of intact FP yields 2 mole of PTH-aspartate per mole of FP. 2. Treatment of a solution of FP with 2-ME followed by the addition of trypsin yields three peptides ...
Bioinformatics for biomedicine Protein domains and 3D structure
... • Sequencebased domain definitions • Pfam http://www.sanger.ac.uk/Software/Pfam/ – Based on Hidden Markov Models (HMMs) • Statistical method to detect patterns • Sensitive ...
... • Sequencebased domain definitions • Pfam http://www.sanger.ac.uk/Software/Pfam/ – Based on Hidden Markov Models (HMMs) • Statistical method to detect patterns • Sensitive ...
Protein structure prediction
Protein structure prediction is the prediction of the three-dimensional structure of a protein from its amino acid sequence — that is, the prediction of its folding and its secondary, tertiary, and quaternary structure from its primary structure. Structure prediction is fundamentally different from the inverse problem of protein design. Protein structure prediction is one of the most important goals pursued by bioinformatics and theoretical chemistry; it is highly important in medicine (for example, in drug design) and biotechnology (for example, in the design of novel enzymes). Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). A continuous evaluation of protein structure prediction web servers is performed by the community project CAMEO3D.