Biomolecules
... Biomolecules • Tertiary structure is determined by interactions between R groups; these interactions include hydrogen bonds, ionic bonds, hydrophobic interactions, and van der Waals interactions. ...
... Biomolecules • Tertiary structure is determined by interactions between R groups; these interactions include hydrogen bonds, ionic bonds, hydrophobic interactions, and van der Waals interactions. ...
THE RDOA-DEPENDENT PHOSPHOPROTEOME PROFILE OF Salmonella enterica
... and E1 subunit of the pyruvate dehydrogenase complex), and in protein synthesis (elongation factor-Tu). These proteins may be phosphorylated in an RdoA-dependent manner to allow normal cell functioning under envelope stress. Several proteins unlikely to be phosphoproteins were also RdoA-dependent. S ...
... and E1 subunit of the pyruvate dehydrogenase complex), and in protein synthesis (elongation factor-Tu). These proteins may be phosphorylated in an RdoA-dependent manner to allow normal cell functioning under envelope stress. Several proteins unlikely to be phosphoproteins were also RdoA-dependent. S ...
Autophagy in Plasmodium, a multifunctional pathway?
... is also missing from PfAtg1. It contains several potential Atg8interacting motifs, which mediate Atg1 binding to Atg8 in an Atg13independent manner in yeast and humans [32]. PfVps34 exists in P. falciparum and is one of the better-characterized proteins. Vps15 and Atg14, also members of the PI3K com ...
... is also missing from PfAtg1. It contains several potential Atg8interacting motifs, which mediate Atg1 binding to Atg8 in an Atg13independent manner in yeast and humans [32]. PfVps34 exists in P. falciparum and is one of the better-characterized proteins. Vps15 and Atg14, also members of the PI3K com ...
Standard PDF - Wiley Online Library
... sented by glutamic acid (Glu), undergo significant isotopic fractionation during transamination/deamination, which often provide greater sensitivity for defining trophic position than bulk SIA (McClelland and Montoya 2002; Chikaraishi et al. 2007, 2009). Conversely, the canonical source AA, phenylal ...
... sented by glutamic acid (Glu), undergo significant isotopic fractionation during transamination/deamination, which often provide greater sensitivity for defining trophic position than bulk SIA (McClelland and Montoya 2002; Chikaraishi et al. 2007, 2009). Conversely, the canonical source AA, phenylal ...
Amino Acid Phylogeny
... is determined by the sequence of nucleotides in a gene. A change in the DNA nucleotide sequence (mutation) of a gene that codes for a protein may result in a change in the amino-acid sequence of the protein. Biochemical evidence of evolution compares favorably with structural evidence of evolution. ...
... is determined by the sequence of nucleotides in a gene. A change in the DNA nucleotide sequence (mutation) of a gene that codes for a protein may result in a change in the amino-acid sequence of the protein. Biochemical evidence of evolution compares favorably with structural evidence of evolution. ...
EMBL-EBI Powerpoint Presentation
... Examine the histograms Use programs such as prss3 to confirm the E-values Searching with shuffled sequences (use MLE/Shuffle in FASTA) which should have an E-value ~1.0 ...
... Examine the histograms Use programs such as prss3 to confirm the E-values Searching with shuffled sequences (use MLE/Shuffle in FASTA) which should have an E-value ~1.0 ...
Processing Synthesis of Cellulase from Ripening
... Gel Electrophoresis, Protein Blotting, and Immunodetection. Proteins were analyzed by SDS-PAGE using 16 cm 10% polyacrylamide gels and the buffer system of Laemmli (24). For immunodetection of cellulase, proteins were electroblotted to nitrocellulose (Bio-Rad) essentially as described by Burnette (7 ...
... Gel Electrophoresis, Protein Blotting, and Immunodetection. Proteins were analyzed by SDS-PAGE using 16 cm 10% polyacrylamide gels and the buffer system of Laemmli (24). For immunodetection of cellulase, proteins were electroblotted to nitrocellulose (Bio-Rad) essentially as described by Burnette (7 ...
ref. #28 of the TIBS article
... were obtained by determining the number of residues between a given reference residue at the lumenal end of the TMH and the glycosylation acceptor Asn needed to get half-maximal glycosylation. Calibration: the phage M13 coat protein We have shown that the N-terminal TMH from the H-subunit of the pho ...
... were obtained by determining the number of residues between a given reference residue at the lumenal end of the TMH and the glycosylation acceptor Asn needed to get half-maximal glycosylation. Calibration: the phage M13 coat protein We have shown that the N-terminal TMH from the H-subunit of the pho ...
Free fatty acids regulate the uncoupling protein and alternative
... respiration (taking into account both the absolute values and the percent of total respiration) was observed in the presence of D T T and Pyr, similar in both states 3 and 4. On the other hand, the addition of 3.9 ~tM LA instead of G T P and BSA, dramatically decreased CN-resistant respiration. In t ...
... respiration (taking into account both the absolute values and the percent of total respiration) was observed in the presence of D T T and Pyr, similar in both states 3 and 4. On the other hand, the addition of 3.9 ~tM LA instead of G T P and BSA, dramatically decreased CN-resistant respiration. In t ...
List of abbreviations
... period of 48 hours, not having been present at the time of patient hospitalization admission, or within 48 hours after discharge, and the result of medical intervention [1,2]. Nowadays, HAIs are, by far, one of the most common complications among hospitalized patients. The World Health Organization ...
... period of 48 hours, not having been present at the time of patient hospitalization admission, or within 48 hours after discharge, and the result of medical intervention [1,2]. Nowadays, HAIs are, by far, one of the most common complications among hospitalized patients. The World Health Organization ...
Protein-protein interactions: mechanisms and
... core, exhibiting limited sets of protein folding patterns. The distribution of secondary structures in the interface of nonobligate complexes shows larger variability and resembles exterior protein surfaces with the exception of a higher ratio of helices (Tsai et al., 1997a). Usually contact area re ...
... core, exhibiting limited sets of protein folding patterns. The distribution of secondary structures in the interface of nonobligate complexes shows larger variability and resembles exterior protein surfaces with the exception of a higher ratio of helices (Tsai et al., 1997a). Usually contact area re ...
Helical capsids of plant viruses
... the disassembly of TMV virions, with the most pronounced effect being observed for Glu50 involved in axial contacts (Lu et al., 1996). Therefore, the carboxylate interactions are thought to serve as a virion structural element involved in a structural transition required for virion translational act ...
... the disassembly of TMV virions, with the most pronounced effect being observed for Glu50 involved in axial contacts (Lu et al., 1996). Therefore, the carboxylate interactions are thought to serve as a virion structural element involved in a structural transition required for virion translational act ...
Nutritional Aspects of Inborn Errors of Metabolism
... hand, the disease itself can impair normal nutrition. During the end of the fetal growth period and the first two years of life, the human brain grows at an impressive rate. This brain growth spurt period (1) is associated with a very high rate of protein synthesis that makes the central nervous sys ...
... hand, the disease itself can impair normal nutrition. During the end of the fetal growth period and the first two years of life, the human brain grows at an impressive rate. This brain growth spurt period (1) is associated with a very high rate of protein synthesis that makes the central nervous sys ...
Isotope Fractionation: Why Aren`t We What We Eat?
... he light elements of major biological importance including hydrogen, carbon, nitrogen, and oxygen all possess naturally occurring stable isotopes. For three of the elements, the minor isotopes are one mass unit heavier than the major or most abundant isotope. The fourth, oxygen, has two minor isotop ...
... he light elements of major biological importance including hydrogen, carbon, nitrogen, and oxygen all possess naturally occurring stable isotopes. For three of the elements, the minor isotopes are one mass unit heavier than the major or most abundant isotope. The fourth, oxygen, has two minor isotop ...
Correlating ribosome function with high
... Figure 1. The ribosome functional centers. (a) The two ribosomal subunits. Left: the small ribosomal subunit (T30S) [4]. The approximate positions of codon–anticodon interactions of A-, P- and E-tRNAs are shown and the main functional domains are indicated: H, head; L, latch; P, platform; S, shoulde ...
... Figure 1. The ribosome functional centers. (a) The two ribosomal subunits. Left: the small ribosomal subunit (T30S) [4]. The approximate positions of codon–anticodon interactions of A-, P- and E-tRNAs are shown and the main functional domains are indicated: H, head; L, latch; P, platform; S, shoulde ...
Protein structure prediction
Protein structure prediction is the prediction of the three-dimensional structure of a protein from its amino acid sequence — that is, the prediction of its folding and its secondary, tertiary, and quaternary structure from its primary structure. Structure prediction is fundamentally different from the inverse problem of protein design. Protein structure prediction is one of the most important goals pursued by bioinformatics and theoretical chemistry; it is highly important in medicine (for example, in drug design) and biotechnology (for example, in the design of novel enzymes). Every two years, the performance of current methods is assessed in the CASP experiment (Critical Assessment of Techniques for Protein Structure Prediction). A continuous evaluation of protein structure prediction web servers is performed by the community project CAMEO3D.