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The International Tomato Sequencing Project and Related
The International Tomato Sequencing Project and Related

... Groups from 10 countries are partners in the project Our group is sequencing 3 of the chromosomes, the remaining 9 are each being sequenced by a group in a different country. ...
Candidate gene screening using long-read sequencing
Candidate gene screening using long-read sequencing

... PacBio, Menlo Park, CA USA ...
HY asiakirjapohja - Hercules Project
HY asiakirjapohja - Hercules Project

... us when requested. Data need to be stored min. 3 months after the project has been accepted. No bioinformatics needed. Alternative experimental settings can be suggested in the tender in addition / instead. Suggestions to negotiate about technical terms is accepted. The following details in the tend ...
Announces Partnership Program for
Announces Partnership Program for

... the expression profile of large numbers of genes in thousands of single cells with high sensitivity and digital precision. Single-cell analysis is widely acknowledged by leading academic and industry researchers as the next frontier of biological discovery and clinical advancement. Traditionally, sc ...
PCR and Its Applications
PCR and Its Applications

... Department of Molecular Biology and Genetics ...
The impact of next-generation sequencing technology on genetics
The impact of next-generation sequencing technology on genetics

... variation of the PCR-directed approaches is exemplified in recent work that selects regions from the genome by microarray-based capture technology [13,14]. Once the target sequences are reclaimed from the array by denaturation and amplified, they can be directly sequenced for mutation detection. Alt ...
BB30055: Genes and genomes
BB30055: Genes and genomes

... - public funding, free access to all, started earlier - used mapping overlapping clones method (B) Celera Genomics – private funding, pay to view - started in 1998 - used whole genome shotgun strategy ...
Severe loss-of-function variants in the genomes of healthy humans James Harraway, Genetic Pathologist
Severe loss-of-function variants in the genomes of healthy humans James Harraway, Genetic Pathologist

... Mendelian disease (and contribute to complex disease) A number of recent studies have established that even severe LOF variants are relatively common in each human genome, and many are rare/novel This has important implications for clinical diagnostic laboratories as we move toward exome/genome NGS, ...
"The Evolutionary Position of the Unique, Tropical Placazoa in the Animal Tree of Life"
"The Evolutionary Position of the Unique, Tropical Placazoa in the Animal Tree of Life"

... The location of placozoans in the tree of animal life is unknown, but a recent report places the phylum at the base of the extant animal tree of life based on its mitochondrial genome sequence [6]. If this location is correct it would mean that the simple structure and genome of this organism is mor ...
Inquiry into Life Twelfth Edition
Inquiry into Life Twelfth Edition

... • First chromosome completed in the Human Genome Project was chromosome 22 in late 1999 • In February 2001, the Venter group and the public consortium each published their versions of a working draft of the whole human genome ...
Hemophilia B (F9) Sequencing and Deletion/Duplication
Hemophilia B (F9) Sequencing and Deletion/Duplication

... • First-line testing in most individuals is not molecular o Molecular genetic testing may be helpful in predicting clinical phenotype and risk of developing a factor IX inhibitor • Carrier testing cannot be accurately performed by measuring factor IX activity o Molecular genetic studies must be perf ...
Whole-Genome Chromatin IP Sequencing (ChIP-Seq)
Whole-Genome Chromatin IP Sequencing (ChIP-Seq)

... fragments on a solid flow cell substrate to create clusters of approximately 1000 clonal copies each. The resulting high density array of template clusters on the flow cell surface is sequenced by the fully automated Illumina Genome Analyzer. Each template cluster undergoes sequencing by synthesis i ...
Genomic sequencing
Genomic sequencing

... a change in a single nucleotide. ...
Powerpoint for Lecture 12
Powerpoint for Lecture 12

... TIFF (Uncompressed) decompressor are needed to see this picture. ...
Seeking Out Dislipidemia Variants with LipidSeq
Seeking Out Dislipidemia Variants with LipidSeq

... workflows was performed exon by exon and 1000 bp at a time. Some of the genes were extremely large, 40–50 exons. It could take up to a month to Sanger sequence each individual DNA sample before we found the causative variant. In addition to research time, there were the costs and the labor to perfor ...
DNA Sequencing - ILRI Research Computing
DNA Sequencing - ILRI Research Computing

... Getting rid of vector sequences is easy once you recognize the problem: just check for them. Repeat sequence DNA is very common in eukaryotes, and sequencing highly repeated regions (such as centromeres) remains difficult even now. High quality sequencing helps a lot: small variants can be reliably ...
Supplementary Information (docx 2885K)
Supplementary Information (docx 2885K)

... EPI template. Then, all images were linearly detrended and bandpass filtered (0.01–0.08 Hz) to eliminate the high-frequency physiological noise. Finally, and smoothed with a Gaussian kernel (full-width half maximum = 6mm). Hippocampus functional connectivity analyses: seed-to-voxel analysis Left and ...
NCIMB Bacterial and Fungal Identification Services
NCIMB Bacterial and Fungal Identification Services

... Identification of bacteria to strain level can be valuable when tracing the source of objectionable organisms in manufacturing environments and comparing them to previous contaminants. It can also be very important with respect to the use of bacteria in patented industrial processes and for the prod ...
File
File

... 3. The human genome contains 3.2 billion nucleotide base pairs .The average gene consists of 3,000 base pairs, but sizes vary greatly, with the largest known human gene has 2.4 million base pairs which is responsible for expressing the dystrophin protein. 4. Functions are still unknown for more tha ...
Next generation sequencing
Next generation sequencing

... and capillary electrophoresis). Massively parallel sequencing generates 100 Mb to 1 Gb of short sequence reads in a single experiment at a cost of ~ $15,000. Third generation sequencing methods are now approaching 3 Gb for $1000. Applications can be divided into deep sequencing (measuring the amount ...
The big blueprint
The big blueprint

... and how genetic diversity has changed over tens of thousands of years. Humans started out in Africa, but migrants took along only a portion of the genetic diversity — today, Africans harbour a more diverse gene pool than other populations. Another section asks what we can glean from the genomes of o ...
File
File

... HSW 7b Outline how gene sequencing allows for genome-wide comparisons between individuals and species. HSW 3 Outline how DNA fragments can be separated by size using electrophoresis. HSW 3 & 4 Outline how genetic disease can be diagnosed and carriers identified by using DNA probes on a DNA micro arr ...
GUEST SPEAKER, Dr Sarah Elsea, Baylor College of Medicine and
GUEST SPEAKER, Dr Sarah Elsea, Baylor College of Medicine and

... not yet associated with a biochemical phenotype. In our clinical experience, the integration of whole exome sequencing data with the metabolomics profile has improved the interpretation of genetic variants, including ruling out the diagnosis of IEMs, as well as supporting a specific diagnosis, and f ...
PCR and Its Applications
PCR and Its Applications

... What is PCR? : The “Reaction” Components 1) Target DNA - contains the sequence to be amplified. 2) Pair of Primers - oligonucleotides that define the sequence to be amplified. 3) dNTPs - deoxynucleotidetriphosphates: DNA building blocks. 4) Thermostable DNA Polymerase - enzyme that catalyzes the re ...
DNA submission instructions - Eurofins Genomics India Pvt Ltd
DNA submission instructions - Eurofins Genomics India Pvt Ltd

... Add no more than 1% end concentration of DMSO or Tetramethylammonium chloride (50mM end concentration) when protocol requires their use. Use only ultra pure chemicals (SIGMA, Molecular Biology grade). ...
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Exome sequencing



Exome sequencing is a technique for sequencing all the protein-coding genes in a genome (known as the exome). It consists of first selecting only the subset of DNA that encodes proteins (known as exons), and then sequencing that DNA using any high throughput DNA sequencing technology. There are 180,000 exons, which constitute about 1% of the human genome, or approximately 30 million base pairs, but mutations in these sequences are much more likely to have severe consequences than in the remaining 99%. The goal of this approach is to identify genetic variation that is responsible for both mendelian and common diseases such as Miller syndrome and Alzheimer's disease without the high costs associated with whole-genome sequencing.
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