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Pre-Lab: Molecular Biology
Pre-Lab: Molecular Biology

... contain 14 base pairs with half of the molecule unzipped and replicated. Label parental strands and daughter strands, the replication fork, the enzymes DNA polymerase and DNA ligase. Be sure that template bases appropriately match the bases of both new strands. **Use may use a different colored penc ...
Duplication of Small Segments Within the Major
Duplication of Small Segments Within the Major

... Tag Isites. respectively; the Taq I sites indicated include only those that flank the indicated probed sequences. M-bcr exons 2 and 3 are indicated as boxes. Each autoradiogram panel shows lanes from the same blot probed with each of the t w o probes. Lanes 1 through 5 are Taq I,Bg/ll/BamHI. Bg/II/B ...
Genomics for the Rancher: How Does it Work and What
Genomics for the Rancher: How Does it Work and What

... I am continually amazed at the tools we have in today’s world to assist in making better and better decisions. This is true in most aspects of our lives – from communications to computers; from entertainment to eating; from politics to travel; and many, many more components of what we do and how we ...
in Power-Point Format
in Power-Point Format

... • Mutations if cell attempts to replicate without repair – Others change base-pairing properties, so are mutagenic: • Ethyl O6-G mispairs with T -> GC ->AT transition mutation ...
Chapt 20 DNA Replication I: Basic Mechanism and Enyzmology
Chapt 20 DNA Replication I: Basic Mechanism and Enyzmology

... • Mutations if cell attempts to replicate without repair – Others change base-pairing properties, so are mutagenic: • Ethyl O6-G mispairs with T -> GC ->AT transition mutation ...
Extraction of High Molecular Weight Genomic DNA from Soils and
Extraction of High Molecular Weight Genomic DNA from Soils and

... 19.b. Add 40 μl TE to the Amicon filter. Wash both side of filter membranes by pipetting up and down in order to recover any DNA residue on the filter. Add this wash solution to the tube at step 18.b. 20.b. If necessary, the DNA can be further concentrated by Microcon® Ultracel YM-30 Centrifugal Fil ...
Genetic and epigenetic dissection of cis regulatory
Genetic and epigenetic dissection of cis regulatory

... mutations in genes that are responsible for maintenance and de novo DNA methylation both cause a suite of developmental defects [37,38] and global changes in chromatin and gene expression level [6,7]. Microarray-based profiling of cytosine methylation promises to provide an insight into global cyt ...
b. genetic engineering.
b. genetic engineering.

... • 3. DNA molecules, which are negatively charged, move toward the positive end of the gel • 4. Smaller DNA fragments move faster and farther. • 5. Based on size the DNA fragments make a pattern of bands on the gel that can be compared with other samples. ...
Lecture PPT - Carol Lee Lab - University of Wisconsin–Madison
Lecture PPT - Carol Lee Lab - University of Wisconsin–Madison

... genome at each generation to define cell types and patterns of gene expression in the developing embryo. These “marks” define which genes are turned on and off. • Marks from the previous generation are typically removed in the germline, to enable totipotency of cells in early embryos • Occasionally ...
SuperScript™ III Platinum® One-Step Quantitative RT
SuperScript™ III Platinum® One-Step Quantitative RT

... The SuperScript™ III Platinum® One-Step Quantitative RT-PCR System is a one-step, quantitative real-time RT-PCR system for the sensitive and reproducible detection and quantification of RNA using real-time detection instruments. This system combines the high-temperature reverse transcription capabil ...
The use of amplified fragment length polymorphism (AFLP) in the
The use of amplified fragment length polymorphism (AFLP) in the

... using AFLPs is the possible occurrence of null alleles, where the Y chromosome is present but the marker does not amplify. Large numbers of known-sex individuals of the heterogametic sex are needed to achieve acceptable small confidence limits on the occurrence of null alleles (e.g. 100 individuals ...
Isolation of Genomic DNA
Isolation of Genomic DNA

... Incubate for 30 to 60min at 30°C Add 500µl 10% SDS and incubate 10min at RT. Add 2ml of 3M KOAc to precipitate SDS. Incubate for 15min on ice and spin at 10000rpm for 15 min (Sorwall, SA600 rotor). The clear supernatant is transferred to fresh tube. Precipitate RNA and DNA with 1 volume isopropanol. ...
Hb Malmö [ß-97(FG-4)His]Gln] leading to polycythemia in a
Hb Malmö [ß-97(FG-4)His]Gln] leading to polycythemia in a

... polycythemia and complained of persistent weakness, headache, and epistaxis. All family members initially showed a normal Hb-electrophoretic pattern, but on isoelectric focusing, three of them displayed a fast-moving band associated with high packed red cell volumes (PCV) and increased red blood cel ...
DNA Analysis Chapter 11
DNA Analysis Chapter 11

... referred to as tandem repeats – When variation in the number of repeats occurs from one individual to the next, the locus is described as having a variable number of tandem repeats (VNTR) – DNA type is a description of the types of alleles at all of the locations being analyzed on the genome ...
b. genetic engineering.
b. genetic engineering.

... • 3. DNA molecules, which are negatively charged, move toward the positive end of the gel • 4. Smaller DNA fragments move faster and farther. • 5. Based on size the DNA fragments make a pattern of bands on the gel that can be compared with other samples. ...
DNA Analysis
DNA Analysis

... • This is important for 2 reasons: – It is a standard or control (i.e. important for Daubert challenges) – one needs to argue that the same amount of DNA is used in each lab, by each lab technician and every time sample is processed – The amount has been optimized for subsequent reactions – so it en ...
Designer Genes - Heredity
Designer Genes - Heredity

... Identifying desired DNA Cutting DNA with Restriction Enzymes Inserting DNA into Vector as Plasmid Connecting DNA pieces with Ligase Inserting Vector into Host Cell as bacterium Cloning desired DNA and Vectors Storing clones in DNA Libraries Identifying cloned genes with Radioactive Probes Analyzing ...
Bchem 4200 Part13 - U of L Class Index
Bchem 4200 Part13 - U of L Class Index

... → Leaving the target side might also involve sliding etc. Sliding accelerates target site location: → under optimum conditions it allows for scanning of ~106 bases per binding event. → but it’s a random walk →the effective sliding distance is much shorter ~ 1000 bp → ionic conditions, in particular ...
Chapter 3
Chapter 3

... and used in gene therapy to treat cystic fibrosis, cancer, and potentially other diseases. allele - One of two or more alternative forms of a gene located at the corresponding site (locus) on homologous chromosomes. Different alleles produce variation in inherited characteristics such as hair color ...
Genome Mapping Reading Assignment and Study Questions
Genome Mapping Reading Assignment and Study Questions

... 2. Distinguish between 'genetic mapping' and 'physical mapping'. What are the strengths and weaknesses of the two techniques? 3. Why are genes not ideal markers for construction of a genetic map? 4. Describe the various types of DNA marker that are used in genetic mapping. How is each type of marker ...
A-10484A SNPs. Mutations and DNA Sequence
A-10484A SNPs. Mutations and DNA Sequence

... 100 bp. PCR products larger than 1000 bps may need an additional denaturation step (94˚C for 1 min) immediately prior to primer extension cycling. Smaller PCR products are desired because they will have a less likelihood of nonspecific binding of other products. For a multiplex PCR situation, design ...
wg: Use primers wg550F and wgABRZ with cycler profile ST
wg: Use primers wg550F and wgABRZ with cycler profile ST

... Alignment was not difficult for COI since there were no insertions or deletions. ArgK did not have any indels except for a 49-base intron in Praeteus fuscus and a 55-base intron in Rhypasma sp., which we excluded from phylogenetic analyses. CAD and wg exhibited numerous indels, including a 33-base i ...
Variable regions of a human anti-DNA antibody 0
Variable regions of a human anti-DNA antibody 0

... (3,4). The paratopes of O-81 were responsible for the idiotypic expression of 0-81 (unpublished data). These findings suggested that the sequence analysis of 0-81 may contribute to understanding the origin of pathogenic autoantibodies in humans. Poly(A+)RNA was prepared from cells of O-81 clone by u ...
Document
Document

Answer Key to Chapter 10 Reading
Answer Key to Chapter 10 Reading

... Answer the following questions as you read modules 10.4–10.5: 1. True or false: DNA replication is fully conservative in that you have the original molecule of DNA intact at the end and a brand-new synthesized piece of DNA. If false, make it a c­ orrect statement. False, DNA replication is sem ...
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Bisulfite sequencing



Bisulphite sequencing (also known as bisulfite sequencing) is the use of bisulphite treatment of DNA to determine its pattern of methylation. DNA methylation was the first discovered epigenetic mark, and remains the most studied. In animals it predominantly involves the addition of a methyl group to the carbon-5 position of cytosine residues of the dinucleotide CpG, and is implicated in repression of transcriptional activity.Treatment of DNA with bisulphite converts cytosine residues to uracil, but leaves 5-methylcytosine residues unaffected. Thus, bisulphite treatment introduces specific changes in the DNA sequence that depend on the methylation status of individual cytosine residues, yielding single- nucleotide resolution information about the methylation status of a segment of DNA. Various analyses can be performed on the altered sequence to retrieve this information. The objective of this analysis is therefore reduced to differentiating between single nucleotide polymorphisms (cytosines and thymidine) resulting from bisulphite conversion (Figure 1).
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