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ESM 2 - Springer Static Content Server
ESM 2 - Springer Static Content Server

... rate we determined in class), estimate the time of mtDNA divergence between LM3 and extant modern humans. Why is there a discrepancy between the age of the LM3 fossil (60,000 years) and the HVR1 divergence time? If so why would that be? Given that LM3 was a modern human who likely exchanged genes wi ...
Arthur Kornberg - Nobel Lecture
Arthur Kornberg - Nobel Lecture

... years ago the alcoholic fermentation of sugar by a yeast cell was a "vital" process inseparable from the living cell, but through the Buchner discovery of fermentation in extracts and the march of enzymology during the first half of this century, we understand fermentation by yeast as a, now familia ...
general introduction
general introduction

... nuclear antigen (PCNA) and the DNA polymerases  and/or  are necessary. Ligation of the newly synthesised DNA is most likely performed by ligase I or ligase III, since mutations in the corresponding genes can give rise to a UV-sensitive phenotype. Two subpathways of NER Two different subpathways of ...
DNA Replication
DNA Replication

... DNA – deoxyribonucleic acid is the nucleic acid that stores and transmits genetic info. from one generation to the next. •present in all organisms, but different (unique) in each individual, except for identical twins. ...
digital PCR - Bio-Rad
digital PCR - Bio-Rad

... Given the high incidence and clinical impact of CNVs, a precise, rapid, and cost-effective method is needed for high-throughput validation of candidate CNV associations and for subsequent routine deployment in diagnostic settings. The predominant method used to validate CNVs in larger populations is ...
PTC Receptor Project Lab Protocol
PTC Receptor Project Lab Protocol

... PTC strips (make sure the volunteers rinse their mouths out with water if they have just eaten anything). The success of the PCR reactions will be determined by gel electrophoresis on Day 2 of the project, and DNA from successful PCR reactions will be purified and prepared for shipping to the Biotec ...
(FA-SAT) in a Cat Fibrosarcoma Might Be Related to Chromosomal
(FA-SAT) in a Cat Fibrosarcoma Might Be Related to Chromosomal

... All these suppositions, at this stage of the work, are speculative. To attest them, the verification of additional kinetochore formation at these regions is needed. Also important would be the analysis of the marker chromosome’s clonal evolution, besides the concomitant study of the amplified repeti ...
Blaine M. Kern CURRICULUM VITAE
Blaine M. Kern CURRICULUM VITAE

... polymerase chain reaction (PCR) based technologies Expertise includes the following PCR-based DNA typing systems: PM+DQA1 via reverse dot blot (SSO typing), D1S80 via polyacrylamide gel electrophoresis (VNTR typing), Profiler Plus and COfiler via capillary electrophoresis (STR typing). Identify phys ...
Module 14 Nucleic Acids Lecture 36 Nucleic Acids I
Module 14 Nucleic Acids Lecture 36 Nucleic Acids I

... • The synthesis take place in a region where the strands have started to separate, because a nucleic acid can be synthesized only in the 5’ to 3’ direction. • The synthesis is catalyzed by enzyme is known as DNA polymerase, and the fragments are joined together by an enzyme is called DNA ligase. • I ...
Big DNA Unit PPT - Madison County Schools
Big DNA Unit PPT - Madison County Schools

... everything to do with cells and because it was believed DNA’s structure was too simple to encode the secret to life). After the Hershey and Chase experiment in 1952 proved DNA was in fact the hereditary material, the race was on to discover it’s structure to gain a better understanding of it. Watson ...
dna: the indispensible forensic science tool
dna: the indispensible forensic science tool

... DNA strands naturally replicate within a cell. • For the forensic scientist, PCR offers a distinct advantage in that it can amplify minute quantities of DNA many millions of times. • First, the DNA is heated to separate it. • Second, primers (short strands of DNA used to target specific regions of D ...
Vocabulary deletion – inversion – translocation – nondisjunction
Vocabulary deletion – inversion – translocation – nondisjunction

... 6. If a base or group of bases is DELETED, what can this loss cause? _________________ ________________ of the remaining ___________ making all the ___________ __________ downstream ___________. 7. What happens to the codons in a frameshift? Circle the correct answer. stay the same or changes the co ...
emboj7601986-sup
emboj7601986-sup

... DNA from targeted ES cell clones, probed with the flanking genomic probe shown in (A). A 6.3 kb fragment is detected from the untargeted locus, while the 7.7 kb fragment indicates the floxed locus. (C) PCR typing analysis of DNA from Crif1flox/+ (flox/+) and Crif1flox/- (flox/-) MEFs, untreated (-) ...
On the concept of biological function, junk DNA and the
On the concept of biological function, junk DNA and the

... Graur et al.’ and others to define biological functions. (ii) Evolutionary constraints on the location and the amount of genomic jDNA Key to exploring the hosts’ evolutionary constraints on the location and the amount of genomic jDNA, as well as it’s putative protective function, is the evolution of ...
On the concept of biological function, junk DNA and the
On the concept of biological function, junk DNA and the

... Graur et al.’ and others to define biological functions. (ii) Evolutionary constraints on the location and the amount of genomic jDNA Key to exploring the hosts’ evolutionary constraints on the location and the amount of genomic jDNA, as well as it’s putative protective function, is the evolution of ...
Unit 5, pt 1: Chapter Objectives: from C Massengale – Biology
Unit 5, pt 1: Chapter Objectives: from C Massengale – Biology

... 19. Describe the process of translation (including initiation, elongation, and termination) and explain which enzymes, protein factors, and energy sources are needed for each stage. 20. Explain what determines the primary structure of a protein and describe how a polypeptide must be modified before ...
DNA extraction from cheek cells protocol I mailed to you
DNA extraction from cheek cells protocol I mailed to you

... the new strand of DNA. DNA polymerase can “proofread” each new double helix DNA strand for mistakes and backtrack to fix any mistakes it finds. To fix a mistake it finds, DNA polymerase removes the incorrectly paired nucleotide and replaces it with the correct one. If a mistake is made and not found ...
Extracting DNA from Your Cells
Extracting DNA from Your Cells

... the new strand of DNA. DNA polymerase can “proofread” each new double helix DNA strand for mistakes and backtrack to fix any mistakes it finds. To fix a mistake it finds, DNA polymerase removes the incorrectly paired nucleotide and replaces it with the correct one. If a mistake is made and not found ...
Chapter 10
Chapter 10

... 10.3 DNA is a double-stranded helix • James Watson and Francis Crick worked out the three-dimensional structure of DNA, based on X-ray crystallography by Rosalind Franklin • DNA consists of two polynucleotide strands wrapped around each other in a double helix – Sugar-phosphate backbones are on the ...
Second Strand cDNA Synthesis Kit
Second Strand cDNA Synthesis Kit

... 2. Collect all components by a brief centrifugation. Incubate the reaction at 16°C for 2.5 hours. 3. Chill on ice. The newly generated double-stranded cDNA is ready for immediate downstream applications, or for long-term storage at -20oC. 4. The quantity and size distribution of the synthesized prod ...
PDF sample
PDF sample

... Most of us would like to think we are special and amazing because of our essential, mysterious self-iness, but it’s really because of our DNA. Experiences of course matter too, but much of who we are and who we become is written inside of us. While it’s romantic to think that our identities can’t be ...
REVIEW ARTICLE
REVIEW ARTICLE

... DNA, a term which is more of a misnomer since their functions are still unknown rather than useless. A part of this non-coding DNA is comprised of repetitive sequences. Highly polymorphic spots in these non-coding regions are referred to as mini- or micro-satellites characterized by repeated blocks ...
Mitochondrial DNA SNP Detection: Design Issues and the Use of the
Mitochondrial DNA SNP Detection: Design Issues and the Use of the

... volume; by reducing salt concentration in the sample before capillary electrophoresis; by use of a formamide with a lower conductivity; by adding more amplified product to the denaturant formamide; and/or by increasing injection time (10). However, at these low levels of template DNA (usually less t ...
Exonic and Intronic Sequence Variation in the Human Leptin
Exonic and Intronic Sequence Variation in the Human Leptin

... Lys656Asn result in changes in charge (neutral to positive and positive to neutral, respectively) and are, therefore, the mostly likely to have functional consequences. In addition, all three amino acids (Lys 109, Gln223, and Lys656) are conserved among rat, mouse, and human species (6,16). It will ...
Summary
Summary

... Assuming a stable mutation rate through time for a group of organisms, mutations can be used like a ‘molecular clock’ to estimate the time of divergence between evolutionary lineages. The molecular clock will be introduced later, but note at this points that we can only observe a small number of mut ...
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Microsatellite



A microsatellite is a tract of repetitive DNA in which certain DNA motifs (ranging in length from 2–5 base pairs) are repeated, typically 5-50 times. Microsatellites occur at thousands of locations in the human genome and they are notable for their high mutation rate and high diversity in the population. Microsatellites and their longer cousins, the minisatellites, together are classified as VNTR (variable number of tandem repeats) DNA. The name ""satellite"" refers to the early observation that centrifugation of genomic DNA in a test tube separates a prominent layer of bulk DNA from accompanying ""satellite"" layers of repetitive DNA. Microsatellites are often referred to as short tandem repeats (STRs) by forensic geneticists, or as simple sequence repeats (SSRs) by plant geneticists.They are widely used for DNA profiling in kinship analysis and in forensic identification. They are also used in genetic linkage analysis/marker assisted selection to locate a gene or a mutation responsible for a given trait or disease.
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