LSAT: learning about alternative transcripts in MEDLINE
... Zavolan et al., 2003). Several instances of these mechanisms are scattered in the literature and it is important to have a curated list of genes that utilizes the above mentioned mechanisms to express alternative transcripts in various tissues and across species to facilitate annotation of transcrip ...
... Zavolan et al., 2003). Several instances of these mechanisms are scattered in the literature and it is important to have a curated list of genes that utilizes the above mentioned mechanisms to express alternative transcripts in various tissues and across species to facilitate annotation of transcrip ...
University of Chicago Department of Human
... provide undergraduate and graduate students with the tool kit required to perform genomic research, I developed a new undergraduate/graduate “Genomics and systems biology” course. In this continuously evolving lecture course, we explore the technologies that enable high-throughput collection of geno ...
... provide undergraduate and graduate students with the tool kit required to perform genomic research, I developed a new undergraduate/graduate “Genomics and systems biology” course. In this continuously evolving lecture course, we explore the technologies that enable high-throughput collection of geno ...
Additional file 5
... only in the Bp22 hybridization. Y-axis : Probe abundance (log2 scale). X-axis : Hybridization ratios of probes. “Common” probes correspond to probes exhibiting true signals (>2 SD) in both strains (purple), while probes exhibiting true signals in one strain and not the other were considered as “stra ...
... only in the Bp22 hybridization. Y-axis : Probe abundance (log2 scale). X-axis : Hybridization ratios of probes. “Common” probes correspond to probes exhibiting true signals (>2 SD) in both strains (purple), while probes exhibiting true signals in one strain and not the other were considered as “stra ...
S1 Text. Supplementary Methods
... within the 30% most repetitive regions were removed. This corresponded to filtering all 50 kb windows with more than ~17% of sites assigned as repeats by RepeatMasker. Finally, we filtered all genomic regions containing a high proportion of heterozygous genotype calls in the C. rubella line Cr1GR1 ...
... within the 30% most repetitive regions were removed. This corresponded to filtering all 50 kb windows with more than ~17% of sites assigned as repeats by RepeatMasker. Finally, we filtered all genomic regions containing a high proportion of heterozygous genotype calls in the C. rubella line Cr1GR1 ...
Assay Standards Working Group Recommendations, November 2012
... In order to ensure that the data are reproducible, experiments should be performed with two or more biological replicates, unless there is a compelling reason indicating that this is impractical or wasteful (e.g. overlapping time points with high temporal resolution). A biological replicate is defin ...
... In order to ensure that the data are reproducible, experiments should be performed with two or more biological replicates, unless there is a compelling reason indicating that this is impractical or wasteful (e.g. overlapping time points with high temporal resolution). A biological replicate is defin ...
Analyzing Genomic Mappings with the GOLAM Framework
... aimed at extracting multidimensional data to feed traditional OLAP systems. In this work we discuss a different use of the GOLAM framework, aimed at multi-resolution analysis of the mappings between regions and samples (i.e., sets of regions and correlated metadata resulting from an experiment). Map ...
... aimed at extracting multidimensional data to feed traditional OLAP systems. In this work we discuss a different use of the GOLAM framework, aimed at multi-resolution analysis of the mappings between regions and samples (i.e., sets of regions and correlated metadata resulting from an experiment). Map ...
Laboratory Analytical Methods
... Ascertainment of FCH Families The 18 extended Dutch FCH families were ascertained through probands that were recruited from the Lipid Clinic of the Utrecht Academic University Hospital, as previously described16. The probands met the following criteria: (1) a primary combined hyperlipidemia with var ...
... Ascertainment of FCH Families The 18 extended Dutch FCH families were ascertained through probands that were recruited from the Lipid Clinic of the Utrecht Academic University Hospital, as previously described16. The probands met the following criteria: (1) a primary combined hyperlipidemia with var ...
OpenCB a next generation big data analytics and visualisation
... Current high-throughput technologies in genomics such as Next-Generation Sequencing (NGS) are generating “omics” data (transcriptomics, pharmacogenomics, etc) at an unprecedented scale with many clinical projects producing hundreds of TB to a few PB now being commonplace. Much of the existing softwa ...
... Current high-throughput technologies in genomics such as Next-Generation Sequencing (NGS) are generating “omics” data (transcriptomics, pharmacogenomics, etc) at an unprecedented scale with many clinical projects producing hundreds of TB to a few PB now being commonplace. Much of the existing softwa ...
RNA sequencing - Bioinformatics.ca
... – Junction database needs to be tailored to read length • Or you can use a standard junction database for all read lengths and an aligner that allows substring alignments for the junctions only (e.g. BLAST … slow). ...
... – Junction database needs to be tailored to read length • Or you can use a standard junction database for all read lengths and an aligner that allows substring alignments for the junctions only (e.g. BLAST … slow). ...
L12_RNAseq
... hundred nucleotides long, and then converted to a complementary DNA (cDNA) library (Wilhelm & Landry, 2009). • Sequencing adaptors are ligated to both ends of each fragment, and the products are sequenced using any highthroughput method such as 454, SOLiD, or Ion Torrent. ...
... hundred nucleotides long, and then converted to a complementary DNA (cDNA) library (Wilhelm & Landry, 2009). • Sequencing adaptors are ligated to both ends of each fragment, and the products are sequenced using any highthroughput method such as 454, SOLiD, or Ion Torrent. ...
2008 BSHG newesletter 01
... The three platforms briefly discussed above are just the beginning of a revolution in the way in which DNA investigations will be carried out in the future. Several technologies are already in the pipeline, which have capacities several orders of magnitude greater than the market forerunners and cos ...
... The three platforms briefly discussed above are just the beginning of a revolution in the way in which DNA investigations will be carried out in the future. Several technologies are already in the pipeline, which have capacities several orders of magnitude greater than the market forerunners and cos ...
14–3 Human Molecular Genetics
... All the hereditary information of an organism makes up its genome. ...
... All the hereditary information of an organism makes up its genome. ...
Non-directed Modification of Genome Cont.. - PMAS
... • Usual transfection methods are not efficient for mammal oocytes and embryos as they are exclusively for somatic cells • Carbon nanotubes have emerged as a new method for gene delivery, and they can be an alternative for embryos transfection ...
... • Usual transfection methods are not efficient for mammal oocytes and embryos as they are exclusively for somatic cells • Carbon nanotubes have emerged as a new method for gene delivery, and they can be an alternative for embryos transfection ...
European Molecular Biology Institute European Bioinformatics Institute
... (EMBL) is supported by sixteen countries. Consists of the main Laboratory in Heidelberg (Germany), Outstations in Hamburg (Germany), Grenoble (France) and Hinxton (U. K.), and an external Research Programme in Monterotondo ...
... (EMBL) is supported by sixteen countries. Consists of the main Laboratory in Heidelberg (Germany), Outstations in Hamburg (Germany), Grenoble (France) and Hinxton (U. K.), and an external Research Programme in Monterotondo ...
technion - israel institute of technology - Technion
... EXPANDER is an integrative package for the analysis of gene expression data, designed as a 'onestop shop' tool that implements various data analysis algorithms ranging from the initial steps of normalization and filtering, through clustering and biclustering, to high-level functional enrichment anal ...
... EXPANDER is an integrative package for the analysis of gene expression data, designed as a 'onestop shop' tool that implements various data analysis algorithms ranging from the initial steps of normalization and filtering, through clustering and biclustering, to high-level functional enrichment anal ...
Part 1: Developmental Genetics
... 1. Explain the purpose of the Human Genome Project (HGP). 2. Compare the approaches to genome sequencing taken by the public human genome project, and Craig Venter’s private initiative. 3. Explain why the HGP finished sequencing four years ahead of schedule. 4. What is bioinformatics and why is it a ...
... 1. Explain the purpose of the Human Genome Project (HGP). 2. Compare the approaches to genome sequencing taken by the public human genome project, and Craig Venter’s private initiative. 3. Explain why the HGP finished sequencing four years ahead of schedule. 4. What is bioinformatics and why is it a ...
An ontology-based GIS for genomic data management of rumen
... 1- ArcGIS is commercial software which is available on http://www.esri.com/software/arcgis/arcgisfor-desktop. 2- Protégé is a free and open-source platform which is available on http://protege.stanford.edu/. 3- Navicat is a powerful solution for MySQL administration which is available on http://navi ...
... 1- ArcGIS is commercial software which is available on http://www.esri.com/software/arcgis/arcgisfor-desktop. 2- Protégé is a free and open-source platform which is available on http://protege.stanford.edu/. 3- Navicat is a powerful solution for MySQL administration which is available on http://navi ...
DNA Technology
... The Human Genome Project (HGP) was an international research effort to map out and sequence all of the genes in our species, Homo Sapiens. Thanks to this project, all of the genes in our bodies –together known as the genome- are now able to be identified and categorized. The Human Genome Project was ...
... The Human Genome Project (HGP) was an international research effort to map out and sequence all of the genes in our species, Homo Sapiens. Thanks to this project, all of the genes in our bodies –together known as the genome- are now able to be identified and categorized. The Human Genome Project was ...
Biotechnology Notes - Mrs. Kievit Science
... o Takes a DNA sample and ___________________ it apart o Human Genome Project Mapping the human ___________________ o Used to screen for diseases Breast ____________________ is an example o Gene Therapy o Utilizes _______________ or bacteria to enter a cell and replace defective genes o Believed ...
... o Takes a DNA sample and ___________________ it apart o Human Genome Project Mapping the human ___________________ o Used to screen for diseases Breast ____________________ is an example o Gene Therapy o Utilizes _______________ or bacteria to enter a cell and replace defective genes o Believed ...
- ClickGene
... Gene therapy is expected to play a key role in next-generation medicine by correcting the underlying genetic causes of disease, thereby facilitating personalised medicine. As this technology can address a wide range of medical conditions, along with finding substantive application within plant genet ...
... Gene therapy is expected to play a key role in next-generation medicine by correcting the underlying genetic causes of disease, thereby facilitating personalised medicine. As this technology can address a wide range of medical conditions, along with finding substantive application within plant genet ...
Finding Patterns in Protein Sequence and Structure
... same color. Genes were assumed to be located in a single operon when they were transcribed in the same direction and the stretches of non-coding DNA separating them were less than 50 nucleotides in length. M. A. Huynen, T. Dandekar and P. Bork ``Variation and evolution of the citric acid cycle: a ge ...
... same color. Genes were assumed to be located in a single operon when they were transcribed in the same direction and the stretches of non-coding DNA separating them were less than 50 nucleotides in length. M. A. Huynen, T. Dandekar and P. Bork ``Variation and evolution of the citric acid cycle: a ge ...
Genomics for Librarians
... How do Genomics and Bioinformatics overlap or interact with Library Science? 1. The NCBI (Natl. Center for Biotechnology Information), the home of GenBank, is part of the National Library of Medicine 2. We store and organize genes like Journal articles accession number, annotation, etc. 3. A big par ...
... How do Genomics and Bioinformatics overlap or interact with Library Science? 1. The NCBI (Natl. Center for Biotechnology Information), the home of GenBank, is part of the National Library of Medicine 2. We store and organize genes like Journal articles accession number, annotation, etc. 3. A big par ...
GENCODE
GENCODE is a scientific project in genome research and part of the ENCODE (ENCyclopedia Of DNA Elements) scale-up project.The GENCODE consortium was initially formed as part of the pilot phase of the ENCODE project to identify and map all protein-coding genes within the ENCODE regions (approx. 1% of Human genome). Given the initial success of the project, GENCODE now aims to build an “Encyclopedia of genes and genes variants” by identifying all gene features in the human and mouse genome using a combination of computational analysis, manual annotation, and experimental validation, and annotating all evidence-based gene features in the entire human genome at a high accuracy.The result will be a set of annotations including all protein-coding loci with alternatively transcribed variants, non-coding loci with transcript evidence, and pseudogenes.