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trigger - Bioconductor
trigger - Bioconductor

(Pan) Salmonella and Salmonella Serotype Typhi–Specific Real
(Pan) Salmonella and Salmonella Serotype Typhi–Specific Real

... (ie, lactose non-fermenting colonies with or without hydrogen sulfide production) are submitted for additional screening or identification, depending on individual laboratory practices.5-7 These practices, although effective, are timeconsuming and costly. The identification of Salmonella directly fr ...
Ingenuity Variant Analysis
Ingenuity Variant Analysis

... HGMD Variant Type: This is the primary focus for finding interesting variants, and most interesting are the disease-causing variants. Predisposing variants tend not to have complete penetrance: one can easily harbour some, without having or ever getting the disease. It means that there is some evide ...
allJoiner
allJoiner

... • The central concept of all.joiner is the identifier, which appears in fields of multiple tables, sometimes even multiple databases. • $gbd is a variable that contains a comma-separated list of genome databases. • An identifier consists of a an identifier line, a required comment in quotes, and a l ...
In Memoriam: Jacques Monod (1910–1976)
In Memoriam: Jacques Monod (1910–1976)

... 1942, while World War II was devastating Europe and France was occupied by the Germans, Monod entered the underground movement. At the beginning of 1943, he joined one of the most active armed resistance groups and later he became Chief of the national staff, a position in which his three predecesso ...
Mapping Polygenes - University of Warwick
Mapping Polygenes - University of Warwick

Rhizobium Nodulation Protein NodC Is an Important Determinant of
Rhizobium Nodulation Protein NodC Is an Important Determinant of

... R. leguminosarum bv. viciae and R. meliloti is due only to the difference between their NodC proteins. The R. leguminosarum bv. viciae nodC deletion mutant complemented with R. loti nodC produced slightly more chitinpentaose-containing LCOs than the strain expressing R. leguminosarum bv. viciae nodC ...
Computational Definition of
Computational Definition of

... We have used a computational approach to identify ESEs and ESSs associated with constitutively spliced exons. We focused on constitutive splicing as opposed to alternative splicing so as to tackle the more fundamental problem represented by the former and to avoid what are likely more complex mechan ...
Affymetrix Software User Manuals
Affymetrix Software User Manuals

... Subject to the Affymetrix terms and conditions that govern your use of Affymetrix products, Affymetrix grants you a nonexclusive, non-transferable, non-sublicensable license to use this Affymetrix product only in accordance with the manual and written instructions provided by Affymetrix. You underst ...
Integrated mapping and characterization of the gene underlying the
Integrated mapping and characterization of the gene underlying the

The landscape of Neandertal ancestry in present
The landscape of Neandertal ancestry in present

... regions that derive from Neandertals in any one human today are usually less than a hundred kilobases in size. However, Neandertal haplotypes are also distinctive enough that several studies have been able to detect Neandertal ancestry at specific loci1,3–8. Here, we have systematically inferred Nea ...
Are sperm-binding proteins among two closely related frog species
Are sperm-binding proteins among two closely related frog species

... addition of sperm in vitro. However, if the cause of infertility is due to the inability of sperm to bind to the egg, IVF will not be able to facilitate fertilization since sperm will never be able to bind and subsequently fuse with the egg. In this case, couples may have to try other artificial rep ...
gsea user guide
gsea user guide

... dataset. For example, before running hierarchical clustering, you might remove genes that have low variance across the dataset. This prevents flat genes from driving the clustering result and improves processing time by focusing on a smaller number of interesting genes. The GSEA algorithm does not f ...
Quantitative analysis of SMN1 and SMN2 genes based on DHPLC
Quantitative analysis of SMN1 and SMN2 genes based on DHPLC

... These two SMN genes are highly homologous and differ in only two nucleotides in the coding region. These nucleotide differences, located in exons 7 and 8, allow the SMN1 gene to be distinguished from the SMN2 gene [Lefebvre et al., 1995]. It has been reported that approximately 94% of SMA patients w ...
"RNA Interference in Caenorhabditis elegans".
"RNA Interference in Caenorhabditis elegans".

... one might detect suppression or enhancement of phenotypes in mutant strains. In C. elegans, RNAi can be induced by delivering dsRNA by microinjection (see Basic Protocol 1 and Alternate Protocol 1), feeding (see Basic Protocols 2, 3, and 4 and Alternate Protocol 2), or soaking (see Basic Protocol 5) ...
Standard PDF - Wiley Online Library
Standard PDF - Wiley Online Library

... mercial rat colonies, and found four distinct karyotype forms. Further analysis raised the number of distinct karyotype forms in rats to eight [15]. Karyotype forms of P. carinii f.sp. carinii have been shown to be stable for at least a year [8]. A particular karyotype form can occur in multiple col ...
Serotype IX, a Proposed New Streptococcus agalactiae
Serotype IX, a Proposed New Streptococcus agalactiae

Evaluation of computational metabolic
Evaluation of computational metabolic

Bacillus subtilis antibiotics: structures, syntheses and specific functions
Bacillus subtilis antibiotics: structures, syntheses and specific functions

... with an amazing variety of structures. The produced anti-microbial active compounds include predominantly peptides that are either ribosomally synthesized and post-translationally modified (lantibiotics and lantibiotic-like peptides) or non-ribosomally generated, as well as a couple of non-peptidic ...
Genomic analysis of the histidine kinase family in bacteria and
Genomic analysis of the histidine kinase family in bacteria and

... phosphotransfer reactions can also occur within a single HK. These so-called hybrid HKs contain additional phosphotransfer modules referred to as the D1 receiver and the HPt phosphotransfer domains that are attached to the C-terminal side of the kinase domain (Appleby et al., 1996). The number of HK ...
From DNA to diversity: molecular genetics and the evolution of
From DNA to diversity: molecular genetics and the evolution of

Metatranscriptome_Pipeline_Tutorial.doc
Metatranscriptome_Pipeline_Tutorial.doc

... This is the step where we attempt to infer the origins of the putative microbial mRNA reads. We use a tiered set of sequence similarity searches of decreasing accuracy - BWA, BLAT and BLASTX. While BWA and BLAT provide high stringency, sequence diversity that occurs at the nucleotide level results ...
Practice Genetic Problems PMB 220 1. In working with a haploid
Practice Genetic Problems PMB 220 1. In working with a haploid

... 3. In a haploid yeast, a cross between a strain requiring arginine (arg-), adenine(ad-), but not nicotinic acid (nic+) or leucine (leu+) and a strain that does not require arginine (arg+) or adenine (ad+), but which does require nicotinamide (nic-) and leucine (leu-) produced sexual spores and 20 of ...
Genome Rearrangements ()
Genome Rearrangements ()

... Sorting By Reversals: A Greedy Algorithm • If sorting permutation p = 1 2 3 6 4 5, the first three elements are already in order so it does not make any sense to break them. • The length of the already sorted prefix of p is denoted prefix(p) • prefix(p) = 3 • This results in an idea for a greedy alg ...
The Influence of Anticodon–Codon Interactions and Modified Bases
The Influence of Anticodon–Codon Interactions and Modified Bases

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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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