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BIODIVERSITY-I: NON
BIODIVERSITY-I: NON

... Sterilization and Disinfection: Physical methods of microbial control: heat, low temperature, high pressure, filtration, desiccation, osmotic pressure, radiation, Chemical methods of microbial control: disinfectants, types and mode of action. Reproduction in Bacteria: Asexual methods of reproduction ...
Practical theory (15-20 min) A phylogeny is the representation of the
Practical theory (15-20 min) A phylogeny is the representation of the

... (“Cladogram”) or as a Phylogram (“Real”), depending on the user's needs. When a branch has length = 0, those sequences are exactly the same. The bigger the distance is, the more separate in evolution the sequences are. ...
Clinical genomics - University of Toledo
Clinical genomics - University of Toledo

... • It is therefore not surprising that mistakes often occur in the ordering of complex genetic tests. • Incorrect ordering of genetic tests results in unnecessary costs to the healthcare system, but more importantly adversely affects the care of our patients – Failure or delays in getting the needed ...
Slides - Biomedical Informatics
Slides - Biomedical Informatics

... UniProt is the universal protein database, a central repository of protein data created by combining Swiss-Prot, TrEMBL and PIR. This makes it the world's most comprehensive resource on protein information. The Protein Information Resource (PIR), located at Georgetown University Medical Center (GUMC ...
Intro Bioinform 1-19..
Intro Bioinform 1-19..

... biological databases. In the context of genomics, this means managing massive amounts of sequencing data and providing useful access to and interpretation of the data” -- Weaver, Molecular Biology, 3rd ed. Definition III: “A field that extracts biological information from large datasets such as sequ ...
SNC2D Genes - Malvern Science
SNC2D Genes - Malvern Science

... Did you know? The source of smelly feet, like smelly armpits, is sweat. And people sweat buckets from their feet. A pair of feet have 500,000 sweat glands and can produce more than a pint of sweat a day. ...
DNA Fingerprinting Notes - Hicksville Public Schools
DNA Fingerprinting Notes - Hicksville Public Schools

... ------------------------------------------------------------------------------------------------------------------------------1. Base your answer to the question on the diagram below and on your knowledge of biology. The diagram shows the results of a technique used to analyze DNA. This laboratory t ...
Using CRISPR-Cas9 to eradicate antimicrobial resistance genes
Using CRISPR-Cas9 to eradicate antimicrobial resistance genes

... Main supervisor: Dr William Gaze (University of Exeter) Second supervisor: Dr Ben Ashby (University of Bath) Dr Edze Westra (University of Exeter), Dr Stineke van Houte (University of Exeter), Prof Ed Feil (University of Bath) Host institution: University of Exeter Project description: Antimicrobial ...
Introduction to your genome
Introduction to your genome

... • Hershey-Chase experiment (1952): used radioactive labeling to show DNA, not protein, transfers genetic information • DNA structure identified (1953) by Watson, Crick (using data from Rosalind Franklin) ...
Introduction
Introduction

... metabolic models for microbes and plants (see Figure 2 and http://kbase.us/metabolic-modeling-inkbase/). In KBase, genome-scale metabolic models are primarily reconstructed from functional annotations produced by the KBase annotation apps. When a genome is functionally annotated, its metabolic genes ...
Plant Nuclear Genome Size Variation
Plant Nuclear Genome Size Variation

... Most are likely paleopolyploids Aneuploid variation – gain or less of one or more chromosomes ...
Powerpoint File - Centre for Microbial Diseases and Immunity
Powerpoint File - Centre for Microbial Diseases and Immunity

... As more genomes from bacterial pathogens are sequenced, it is becoming apparent that a significant proportion of virulence factors are encoded in clusters of genes, termed Pathogenicity Islands (reviewed in 1). These islands and other genomic islands, tend to have atypical guanine and cytosine conte ...
Plant DNA Barcoding - Columbia University
Plant DNA Barcoding - Columbia University

... The body form ranges from hemispherical (e.g., Cleidostethus) to elongate oval (e.g., Clypastraea) to latridiid-like (e.g., Foadia). Corylophids are typically dull brown, but some species have contrasting yellowish-brown patches on the pronotum or elytra. The integument is often densely punctured an ...
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... DNA sites to trap the replisome at the end. 7. Eukaryotic chromosomes are linear, and the chromosome ends cannot be replicated by the replisome. 8. Telomerase extends the leading strand at the end. 9. Telomerase is a ribonucleoprotein (RNP) with RNA (template) and reverse-transcriptase subunits. ...
UNIVERSITI MALAYSIA PERLIS UJIAN 2 Semester Kedua Sidang
UNIVERSITI MALAYSIA PERLIS UJIAN 2 Semester Kedua Sidang

... classification you would choose for the microbial taxonomy stating its advantages. ANSWER Natural classification: Arrange organisms into groups whose members share many characteristics. First such classification in 18th century developed by Linnaeus - based on anatomical characteristics This approac ...
microbe mission test
microbe mission test

... 30. Choose which of the following are plausible symptoms of legionellosis. You may circle ...
Branchiootorenal (BOR/BOS) Spectrum Disorder Panel
Branchiootorenal (BOR/BOS) Spectrum Disorder Panel

... of individuals with BOR/BOS have an identified mutation in EYA1. Approximately 10% of individuals with BOR/BOS will have a chromosomal rearrangement in the region of the EYA1 gene, which will not be detected by our test methodology. FISH and deletion duplication analysis may be indicated in the pres ...
Eukaryotic and Prokaryotic Cells
Eukaryotic and Prokaryotic Cells

... Transposon is cut out of its location by an enzyme Transposase is encoded within the transposon ...
Green Genomes - Columbia Blogs
Green Genomes - Columbia Blogs

... with just two copies of each chromosome, whereas maize seemed to come from a polyploid; its extra chromosomes might have made piecing together sequenced DNA an even more daunting task. But the Arabidopsis DNA revealed that at least twice, the plant had somehow duplicated its entire genome and surviv ...
ASviewer: Visualizing the transcript structure and functional
ASviewer: Visualizing the transcript structure and functional

... Summary: Alternative splicing (AS) produces diverse transcript structures by differential use of splice sites. Comparing the gene structure and functional domains of splice variants is an essential but nontrivial task with numerous gene predictions available publicly. We developed a novel viewer (AS ...
Promoter sequence analysis
Promoter sequence analysis

...  Signal search analysis has played an instrumental role in the characterization of eukaryotic promoter elements  The method has originally been developed for the analysis of eukaryotic promoters but has a much broader application potential (e.g. Shine-Dalgarno signal analysis)  Rapidly growing co ...
No Slide Title
No Slide Title

... Regulatory regions=300 Mbp? •Only 5-10% of human genome codes for genes - function of other DNA (mostly repetitive sequences) unknown but it might serve structural or regulatory roles ...
Unit 1: History and Scope of Microbiology
Unit 1: History and Scope of Microbiology

... usually less than 1mm in diameter which requires some form of magnification to be seen clearly ...
Sir Alec Jeffreys minisatellites
Sir Alec Jeffreys minisatellites

... 5-300 bp depending on species. 105 - 106 times. Generally heterochromatic. Centromeric DNA, telomeric DNA. There are at least 10 distinct human types of satellite DNA. A single type may be more than 1% of the genome (equivalent to 3 entire E. coli genomes). ...
Dr. X and the Quest for Food Safety: Understanding
Dr. X and the Quest for Food Safety: Understanding

... ...
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Metagenomics



Metagenomics is the study of genetic material recovered directly from environmental samples. The broad field may also be referred to as environmental genomics, ecogenomics or community genomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Recent studies use either ""shotgun"" or PCR directed sequencing to get largely unbiased samples of all genes from all the members of the sampled communities. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale and detail than before.
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