Status and plans, human vs. mouse alignments
... Genome-wide local alignment chains Human: 2.9 Gb assembly. Mask interspersed repeats, break into 300 segments of 10 Mb. ...
... Genome-wide local alignment chains Human: 2.9 Gb assembly. Mask interspersed repeats, break into 300 segments of 10 Mb. ...
Bioteh_Klonesana un in vivo inhenierija_2015
... a | Nuclease-induced double-strand breaks (DSBs) can lead to sequence insertion, nucleotide correction or change (red box) through homology-directed repair (HDR) in the presence of a donor DNA or a single-strand oligodeoxynucleotide (ssODN), both of which contain homology arms. DSBs can also be repa ...
... a | Nuclease-induced double-strand breaks (DSBs) can lead to sequence insertion, nucleotide correction or change (red box) through homology-directed repair (HDR) in the presence of a donor DNA or a single-strand oligodeoxynucleotide (ssODN), both of which contain homology arms. DSBs can also be repa ...
Complementary DNA Sequencing: Expressed Sequence Tags and
... • Found 230 ESTs, representing new genes • Random selection approach yields a high amount of highly represented clones in the cDNA libraries used ~ NOT GOOD!! • EST and physical mapping → high resolution map of the location of genes on chromosomes ~ more efficient and cheaper than genomic sequencing ...
... • Found 230 ESTs, representing new genes • Random selection approach yields a high amount of highly represented clones in the cDNA libraries used ~ NOT GOOD!! • EST and physical mapping → high resolution map of the location of genes on chromosomes ~ more efficient and cheaper than genomic sequencing ...
Aliens? - Johns Hopkins Bloomberg School of Public Health
... – RepeatMasker (Smit & Jurka) – Problem: each element is at least in part unique, and RepeatMasker will mask that too ...
... – RepeatMasker (Smit & Jurka) – Problem: each element is at least in part unique, and RepeatMasker will mask that too ...
幻灯片 1 - TUST
... data has already accumulated and genomes are being sequenced at an everincreasing pace. The only way to organize and analyze all these data is through the use of computers, and this has led to the development of a new interdisciplinary field that combines biology, mathematics, and computer science. ...
... data has already accumulated and genomes are being sequenced at an everincreasing pace. The only way to organize and analyze all these data is through the use of computers, and this has led to the development of a new interdisciplinary field that combines biology, mathematics, and computer science. ...
BIOL 433 Plant Genetics Term 1, 2005
... http://www.nature.com/nmeth/journal/v5/n1/full/nmeth1156.html ...
... http://www.nature.com/nmeth/journal/v5/n1/full/nmeth1156.html ...
Molecular Genetics Outcome Checklist
... _____ I can explain how, in general, restriction enzymes cut DNA molecules into smaller fragments based on a specific nucleotide sequence, leaving “sticky ends”. _____ I understand the purpose and function of ligases. _____ I can explain how restriction enzymes, ligases, and other DNA technology ca ...
... _____ I can explain how, in general, restriction enzymes cut DNA molecules into smaller fragments based on a specific nucleotide sequence, leaving “sticky ends”. _____ I understand the purpose and function of ligases. _____ I can explain how restriction enzymes, ligases, and other DNA technology ca ...
BIOL 433 Plant Genetics Term 1, 2005
... http://www.nature.com/nmeth/journal/v5/n1/full/nmeth1156.html ...
... http://www.nature.com/nmeth/journal/v5/n1/full/nmeth1156.html ...
Public data and tool repositories Section 2 Survey of
... 1. The Entrez Map Viewer 2. The EBI/Ensembl browser 3. The UCSC genome browser ...
... 1. The Entrez Map Viewer 2. The EBI/Ensembl browser 3. The UCSC genome browser ...
For SNP microarray analysis processed before Oct. 15, 2012
... with the Illumina HD HumanOmni1-quad BeadChip platform. This chip contains approximately 1,140,419 probes including both single nucleotide polymorphisms (SNP) and non-SNP alleles. The test is used to identify chromosomal imbalances throughout the human genome. These imbalances include deletions, dup ...
... with the Illumina HD HumanOmni1-quad BeadChip platform. This chip contains approximately 1,140,419 probes including both single nucleotide polymorphisms (SNP) and non-SNP alleles. The test is used to identify chromosomal imbalances throughout the human genome. These imbalances include deletions, dup ...
Chapter 4
... • Polypeptides are generally coded by sequences in nonrepetitive DNA. • Larger genomes within a taxon do not contain more genes, but have large amounts of repetitive DNA. • A large part of moderately repetitive DNA may be made up of transposons. ...
... • Polypeptides are generally coded by sequences in nonrepetitive DNA. • Larger genomes within a taxon do not contain more genes, but have large amounts of repetitive DNA. • A large part of moderately repetitive DNA may be made up of transposons. ...
Manipulating DNA - Lemon Bay High School
... How are changes made to DNA? • Scientists use their knowledge of the structure of DNA and its chemical properties to study and change DNA molecules. • Making changes in the DNA code of a living organism ...
... How are changes made to DNA? • Scientists use their knowledge of the structure of DNA and its chemical properties to study and change DNA molecules. • Making changes in the DNA code of a living organism ...
Protein-coding genes in eukaryotic DNA
... colleagues (2006) suggest that there are ~19,000 pseudogenes in the human genome, slightly fewer than the number of functional protein-coding genes. (11,000 non-processed, 8,000 processed [lack introns].) ...
... colleagues (2006) suggest that there are ~19,000 pseudogenes in the human genome, slightly fewer than the number of functional protein-coding genes. (11,000 non-processed, 8,000 processed [lack introns].) ...
Study Guide – Unit 6 Test: Genetics and DNA Name: Per: 1 2 3 4 5 6
... How many codons are needed to specify three amino acids? ...
... How many codons are needed to specify three amino acids? ...
MEDICAL GENETICS - University of Michigan Health System
... • We are a young species--~100,000 humans came out of Africa <150,000 years ago ...
... • We are a young species--~100,000 humans came out of Africa <150,000 years ago ...
Lecture
... Homolog– genes sharing a common origin note: two genes are homologs or they or not no such thing as %homology or “more homologous” ...
... Homolog– genes sharing a common origin note: two genes are homologs or they or not no such thing as %homology or “more homologous” ...
Slide 1
... Human Genome: Diploid (2 copies of genetic material) 46 Chromosomes (total) Gender-specific Chromosomes: XX = Female XY = Male Not all cells/organisms are diploid gametes = haploid (1 copy) wheat, corn = hexaploid (6 copies) ...
... Human Genome: Diploid (2 copies of genetic material) 46 Chromosomes (total) Gender-specific Chromosomes: XX = Female XY = Male Not all cells/organisms are diploid gametes = haploid (1 copy) wheat, corn = hexaploid (6 copies) ...
Genomics
... • OK you have a sequence. What does the gene do? What is the function of the protein? – Search the databases for similar sequences – Is the sequence similar to sequences for proteins of known function? – Use computer to search for functional motifs. • Various proteins that do the same thing have sim ...
... • OK you have a sequence. What does the gene do? What is the function of the protein? – Search the databases for similar sequences – Is the sequence similar to sequences for proteins of known function? – Use computer to search for functional motifs. • Various proteins that do the same thing have sim ...
Ch 11 homework
... B) fact that individuals of the same species have different phenotypes. C) process by which genetic information flows from genes to proteins. D) fact that certain genes are visible as dark stripes on a chromosome. E) flow of information from parent to offspring. 2. Outline the function of the lac op ...
... B) fact that individuals of the same species have different phenotypes. C) process by which genetic information flows from genes to proteins. D) fact that certain genes are visible as dark stripes on a chromosome. E) flow of information from parent to offspring. 2. Outline the function of the lac op ...
Human genome
The human genome is the complete set of nucleic acid sequence for humans (Homo sapiens), encoded as DNA within the 23 chromosome pairs in cell nuclei and in a small DNA molecule found within individual mitochondria. Human genomes include both protein-coding DNA genes and noncoding DNA. Haploid human genomes, which are contained in germ cells (the egg and sperm gamete cells created in the meiosis phase of sexual reproduction before fertilization creates a zygote) consist of three billion DNA base pairs, while diploid genomes (found in somatic cells) have twice the DNA content. While there are significant differences among the genomes of human individuals (on the order of 0.1%), these are considerably smaller than the differences between humans and their closest living relatives, the chimpanzees (approximately 4%) and bonobos. Humans share 50% of their DNA with bananas.The Human Genome Project produced the first complete sequences of individual human genomes, with the first draft sequence and initial analysis being published on February 12, 2001. The human genome was the first of all vertebrates to be completely sequenced. As of 2012, thousands of human genomes have been completely sequenced, and many more have been mapped at lower levels of resolution. The resulting data are used worldwide in biomedical science, anthropology, forensics and other branches of science. There is a widely held expectation that genomic studies will lead to advances in the diagnosis and treatment of diseases, and to new insights in many fields of biology, including human evolution.Although the sequence of the human genome has been (almost) completely determined by DNA sequencing, it is not yet fully understood. Most (though probably not all) genes have been identified by a combination of high throughput experimental and bioinformatics approaches, yet much work still needs to be done to further elucidate the biological functions of their protein and RNA products. Recent results suggest that most of the vast quantities of noncoding DNA within the genome have associated biochemical activities, including regulation of gene expression, organization of chromosome architecture, and signals controlling epigenetic inheritance.There are an estimated 20,000-25,000 human protein-coding genes. The estimate of the number of human genes has been repeatedly revised down from initial predictions of 100,000 or more as genome sequence quality and gene finding methods have improved, and could continue to drop further. Protein-coding sequences account for only a very small fraction of the genome (approximately 1.5%), and the rest is associated with non-coding RNA molecules, regulatory DNA sequences, LINEs, SINEs, introns, and sequences for which as yet no function has been elucidated.