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Recombinant Ebola virus VP40 matrix protein
Recombinant Ebola virus VP40 matrix protein

... (A) SDS-PAGE and stain demonstrating 1 g and 5 g (lanes 1-2) of EBOV VP40 protein under denaturing and reducing conditions. MW denotes Novex® Sharp pre-stained protein markers. (B) Western blot detection of EBOV VP40 at 50 ng and 100 ng (lanes 1-2). EBOV VP40 was detected using IBT’s polyclonal an ...
Repetitive Patterns in Proteins
Repetitive Patterns in Proteins

... Modular re-use in different contexts Therefore, classification schemes are based on domains not entire proteins Domains themselves are formed by a set of recurring super-secondary structure elements ...
Day 6 Carlow Bioinformatics
Day 6 Carlow Bioinformatics

... • May be more than 1 motif defining a family • A great first attempt and still useful but too crude ...
Beta sheets are twisted
Beta sheets are twisted

... Once it has formed, an amyloid fibril is virtually indestructible (interchain H- bonds). It seems likely that protein folding pathways have evolved not only to allow polypeptides to assume stable native structures but also to avoid forming interchain H-bonds that would lead to fibril formation . ...
Macromolecules - Lisle CUSD 202
Macromolecules - Lisle CUSD 202

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view

... Edgetic perturbations seem to confer distinct functional consequences from node removal because a large fraction of cases in which a single gene is linked to multiple disorders can be modeled by distinguishing edgetic network perturbations. ...
Proteins
Proteins

... • . essential life substance of all living matter . • act as structural unit to build our bodies . • specific structural chemical units amino acids • amino [alkaline substance carbon, hydrogen ,o2& NH2. ...
“Building” proteins!!
“Building” proteins!!

Chemistry Test Study Guide
Chemistry Test Study Guide

... 22. _____________ and ______________ are the two types of nucleic acids. 23. Name the function of nucleic acids. _________________________________________ 24. Describe/Draw the structure of DNA. ( What does it look like?) ____________________________ Energy and Enzymes 25. ______________________ are ...
Mining complex Drug/Gene/Disease relations in pubmed.
Mining complex Drug/Gene/Disease relations in pubmed.

... the sentence connecting the candidate interactants, are used as indicators of relevance. Global information, such as frequency of mentions of the interactants in the paper, is further used for weighting purposes. As in the case of the BioCreative setup, not all relationships mentioned in a paper are ...
Lecture 12
Lecture 12

... been reduced and carboxymethylated. ...
The Folding and Assembly of Proteins
The Folding and Assembly of Proteins

Lecture slides
Lecture slides

... Bioinformatics is conceptualizing biology in terms of molecules (in the sense of physicalchemistry) and then applying “informatics” techniques (derived from disciplines such as applied math, CS, and statistics) to understand and organize the information associated with these molecules, on a large-sc ...
SSE – secondary structure element (ex. helices, sheets)
SSE – secondary structure element (ex. helices, sheets)

Protein Structure
Protein Structure

... as C-term AA Eg. Chymotrypsin: cleave to leave Tyr or Trp or Phe as C-term AA Eg. Cyanogen bromide cleaves at internal Met leaving Met as C-term ...
Sticky end in protein synthesis - The School of Molecular and
Sticky end in protein synthesis - The School of Molecular and

... that this mutation increases the frequency of errors during translation, leading to the gradual accumulation of inaccurately synthesized proteins that eventually form aggregates. As well as discovering another cause of cellular protein aggregation, Lee et al. demonstrate the importance of quality co ...
Learning Objectives handouts
Learning Objectives handouts

... 1. List the four major classes of macromolecules. 2. Distinguish between monomers and polymers. 3. Draw diagrams to illustrate condensation and hydrolysis reactions. Carbohydrates Serve as Fuel and Building Material 4. Distinguish between monosaccharides, disaccharides, and polysaccharides. 5. Descr ...
Amino acids
Amino acids

... Chemistry of Life Biology – S1 ...
Lecture8
Lecture8

... Solutions to problems caused by rare codons • exchange the rare codon/s for a more ...
MicroScale Thermophoresis Measurements on in vitro Synthesized
MicroScale Thermophoresis Measurements on in vitro Synthesized

... vast amounts of material that can be a challenge to produce at sufficient high quality. The present study was designed to show that the novel and powerful technology MST used in combination with cell-free protein biosynthesis is a very efficient and smart shortcut to this classical approach to obtai ...
Protein concentration measurement by UV
Protein concentration measurement by UV

... protein on their absorbance, but at the same time it will also hide any problems with aggregation of the material as all protein will be denatured and solubilised. Depending on the method, the absorption coefficient should be calculated using either values from Pace et al (1995, native conditions) o ...
Translation and Protiens
Translation and Protiens

... Amino acids are linked together by peptide bonds to form one or more macromolecule subunits called polypeptides. Long chains of polypeptides result in the formation of proteins. The primary amimo acid sequence of a protein determines its secondary, tertiary, and quaternary structure, which then in t ...
Dr. Bryan Ballif identifies phosphorylation sites on key proteins regulating cell  growth and proliferation.
Dr. Bryan Ballif identifies phosphorylation sites on key proteins regulating cell  growth and proliferation.

... Genetics Network Proteomics Facility, which he co‐directs.  ...
Proteins2[1]
Proteins2[1]

... • β α β motif: a helix connects two β sheets • β hairpin: reverse turns connect antiparallel β sheets • α α motif: two α helices together • β barrels: rolls of β sheets ...
Ubiquitin-proteosome protein degradation ppt
Ubiquitin-proteosome protein degradation ppt

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Interactome



In molecular biology, an interactome is the whole set of molecular interactions in a particular cell. The term specifically refers to physical interactions among molecules (such as those among proteins, also known as protein-protein interactions) but can also describe sets of indirect interactions among genes (genetic interactions). Mathematically, interactomes are generally displayed as graphs.The word ""interactome"" was originally coined in 1999 by a group of French scientists headed by Bernard Jacq. Though interactomes may be described as biological networks, they should not be confused with other networks such as neural networks or food webs.
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