Download Assembling Gene Lists Based on Protein Domains

Assembling Gene Lists Based on Protein Domains
1.
Find the InterPro ID (IPRxxxxxx) for domains from Interpro databases
http://www.ebi.ac.uk/interpro/index.html or Pfam
http://pfam.sanger.ac.uk/search?tab=searchKeywordBlock
2.
Use the InterPro ID to find proteins under the protein family in the website
of http://www.ebi.ac.uk/
3. Translate the gene symbols to Gene IDs and Refseq IDs by using batch search
in Panther database http://www.pantherdb.org/genes/batchIdSearch.jsp . For
proteins which don’t have Gene Names, use Accession numbers such as
Q9UBT2 to find gene IDs in NCBI database
http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=
4. For Gene Names not match in Panther database, search them in NCBI
database
http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term= ()