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Annals of Botany 77: 547-553, 1996 BOTANICAL BRIEFING Pattern in the Root Epidermis: An Interplay of Diffusible Signals and Cellular Geometry LIAM DOLAN Department of Cell Biology, John Innes Centre, Norwich NR4 7UH, UK Received: 22 November 1995 Accepted: 14 January 1996 The epidermis of roots is composed of hair and non-hair cells. Patterning of this epidermis results from spatially regulated differentiation of these cell types. Root epidermal development in vascular plants may be divided into three broad groups based on the mode of hair development; Type 1: any cell in the epidermis can form a root hair; Type 2: the smaller product of an asymmetric cell division forms a root hair; Type 3: the epidermis is organized into discrete files of hair and non-hair cells. The Arabidopsis root epidermis is composed of discrete files of hair and non-hair cells (Type 3). Genetic and physiological evidence indicates that ethylene is a positive regulator of hair cell development. Genes with opposite roles in the development of hair cells in the shoot (trichomes) and hair cells in the root have been identified. Plants with presumptive loss of function alleles in the TRANSPARENT TESTA GLABRA (TTG) or GLABRA2 (GL2) genes are devoid of trichomes indicating that these genes are positive regulators of trichome development. The development of supernumerary root hair cells in these mutant backgrounds illustrates that these genes are also negative regulators of root hair cell development. A model that explains the spatial pattern of epidermal cell differentiation implicates ethylene or its precursor 1-amino-l-cyclopropane carboxylate as a diffusible signal. Possible roles for the TTG and GL2 genes in relation to the ethylene signal are discussed. © 1996 Annals of Botany Company Key words: Arabidopsis, root development, ethylene, root hair cell, epidermis. INTRODUCTION Cell patterning in the root epidermis The root epidermis of most vascular plants is composed of a patterned array of two cell types, root hair cells and nonhair cells. The development of hair cells has been described on roots and root-like structures of the most primitive, extant, vascular plants, such as Lycopodium, Selaginella and through to the most advanced groups of angiosperms (Leavitt, 1904). Recently, the genetic analysis of root epidermal pattern in Arabidopsis has led to a mechanistic understanding of the patterning process in this species and sets the stage for its examination in other taxa with different epidermal patterns. In a survey of the organization of cells in the root epidermis of extant members of most groups of vascular plants, Leavitt (1904) distinguished between two basic patterns of epidermal differentiation; Type 1 (Fig. 1A): any cell in the root epidermis may differentiate as a root hair cell, Type 2 (Fig. IB): root hair cells differentiate from the smaller product of an asymmetric cell division in the meristematic zone (Cormack, 1937; Cutter and Feldmann, 1970; Cutter and Hung, 1972). Cormack (1935, 1947) described what might be considered to be a third pattern, Type 3 (Fig. 1C): epidermal cells arranged in files composed of only one cell type, either hair cells or non-hair cells. Species in which hair cells differentiate in any position (Type 1) are characteristic of most ferns (Filopsida), some monocotyledons and almost all dicotyledons. The second 0305-7364/96/060547 + 07 $18.00/0 type of differentiation is characteristic of more primitive land plants such as Lycopodium, Selaginella, Isoetes (Lycopisda), Equisetum (Sphenopsida) and some monocotyledons and a single dicotyledonous family, the I Hi I • I I lilfl I I B I I FIG. 1. Three types of root epidermal patterning in mature roots of vascular plants. Black cells are non-hair cells and hatched cells are root hair cells. The circle represents the position of the root hair base. A, Type 1 differentiation in which any hair can form a root hair. B, Type 2 differentiation in which root hair cells are the smaller product of an asymmetric cell division in the meristem. C, Type 3 differentiation in which there are discrete files of hair cells and files of non-hair cell files. © 1996 Annals of Botany Company 548 Dolan—Pattern in the Root Epidermis Nymphaeaceae. Type 3 differentiation is found among members of the Brassicaceae. PATTERN Cell patterning as a developmental process Pattern is defined as the three-dimensional spatial arrangement of pattern elements. In the root epidermis, a twodimensional system, the elements are individual cells. In other systems the pattern elements may include branches (in establishing the architectural model of the shoot system), leaves (phyllotaxis), floral organs (in a flower), etc. Celltypes in the root epidermis may be located in any position relative to neighbouring cells (Type 1), regularly spaced along all cell files as a result of regular asymmetric cell divisions (Type 2) or in an array where cells are arranged in files of identical cell types (Type 3) (Leavitt, 1904; Cormack, 1935, 1947). While studying the development of pattern at the level of individual cells may at first glance appear to have little to do with the patterning of other ' big' plant structures such as leaves and flowers, it should be remembered that many of the interactions that occur during the development of these ' big' structures take place over relatively few cell distances at or near the meristem or in developing primordia. Therefore the mechanisms that govern the patterned specification of cell fate in an epidermis may, theoretically at least, be similar to those that are involved in the patterning of larger structures. In a similar vein, both anterior-posterior and dorso-ventral polarity in the Drosophila embryo is established over one cell distance, between the oocyte and the surrounding follicle cells (Gonzalez-Reyes, Elliot and St Johnson, 1995). Cell fate in plants has been shown in numerous studies to be dependent on position and not lineage (Barlow, 1984; Steeves and Sussex, 1989; Irish, 1991; van den Berg et al., 1995). Another way of saying this is that cell fate is determined relatively late in development and is dependent upon cues received by a cell from its environment and neighbours. This is not to say that dividing cells are not TABLE responding to cues, rather it indicates that these cues may be overridden by other signals to which the cells are exposed later in development. The aim of the present research is to identify these developmental signals and characterize their role in the patterning of the root epidermis. Genetic analysis facilitates the identification of molecules that are involved in the development of cell pattern Genetic analysis allows the identification of genes that encode proteins that are involved in a developmental process. A change in the DNA sequence of a gene or its regulatory region is known as a mutation. Genes involved in specific aspects of development may be identified by mutation. For example, if the activity of a particular gene required for hair development (a positive regulatory gene) is lost, by mutation, then the plant carrying the mutation will exhibit a hairless phenotype. Therefore screening populations of mutant seedlings for root-hairless phenotypes would identify genes which are positive regulators of hair development. If on the other hand one were to screen for extra-hairy mutant seedlings then one might expect to identify mutations in negative regulatory genes. Such loss of function mutations are generally recessive to the wild-type gene, i.e. heterozygous plants (carrying one wild-type and one mutant copy of the gene) are wild-type in phenotype. A list of the mutant genes and their proposed roles in root epidermal patterning is presented in Table 1. CELL P A T T E R N I N G IN THE ARABIDOPSIS ROOT E P I D E R M I S The primary root of Arabidopsis is structurally simple and invariant (Dolan et al, 1993). It consists of a stele encircled by an eight-celled endodermis and cortex. The cortex is in turn encircled by an epidermis which is composed of two cell types. Epidermal cells lying over the anticlinal (wall perpendicular to the root surface) cortical cell walls form root hairs (Dolan et al., 1994; Galway et al., 1994). Epidermal cells located over the outer periclinal wall (wall 1. List of genes involved in patterning the root epidermis in Arabidopsis Gene Mutant phenotype CONSTITUTIVE TRIPLE RESPONSE] (CTRI) Root hairs develop in all cell files in root epidermis TRANSPARENT TESTA GLABRA (TTG) GLABRA2 (GL2) Root hairs develop in all root hair files in epidermis ROOT HAIR DEVELOPMENT6 (RHD6) DWARF (DWE) AUXIN RESISTANT2 (AXR2) Proposed wild-type function Reference Negative regulator of root hair development and ethylene signal transduction Negative regulator of root hair development Kieber et al., 1993; Dolan et al., 1994 Root hairs develop in all hair files of epidermis Few root hairs develop Negative regulator of root hair development Positive regulator of root hair development Dolan and Morelli (unpubl. res.) Masucci et al., 1994 No root hairs develop Positive regulator of root hair development Mirza et al., 1984 No root hairs develop Galway et al, 1994 Wilson et al., 1990 549 Dolan—Pattern in the Root Epidermis parallel to the root surface) of a single cortical cell form non-hair cells. Cell fate in the root epidermis is therefore defined by the relative position of epidermal cells and their neighbours. Histological and clonal analysis has indicated that the root epidermis is derived from a ring of approximately 16 initials located below the quiescent centre at the root tip (Dolan et al, 1993, 1994). Clonal analysis allows the fates of cells to be determined since it involves the uncovering of a genetic marker in cells that is inherited in all descendent cells. The uncovering of a histochemical GUS (glucuronidase) marker (introduced on a transgene) in epidermal initial cells results in a clone of cells in the lateral root cap and adjacent epidermis being labelled with GUS activity. This provides unequivocal evidence that the epidermis and lateral root cap are derived from a common set of initials in Arabidopsis (Dolan et al., 1994). Differences between the two epidermal cell types are evident early in their development in the Arabidopsis root epidermis (Dolan et al., 1994; Galway et al., 1994). Hair cells are shorter than their neighbouring non-hair cells by the time they undergo elongation so that the root hair cell is generally shorter than the non-hair cell at maturity. Cytoplasmic vacuolation of the non-hair cells is evident before it occurs in the hair cells giving them the relatively dense cytoplasmic appearance (Dolan et al., 1994; Galway et al., 1994). Bulges appear at the end of the root hair cell nearest the meristem by the end of the elongation stage (Dolan et al, 1994; Masucci et al., 1994). The growth of the bulge is initially slow (< 1 /an h"1) but gradually increases to about 1 fim min"1 once the hair attains a length of approximately 20 [im. (Dolan et al., 1994). Consequently, the hair cell is actively growing at this stage of development, while the non-hair cells of the epidermis have ceased growth. The uncoupling of growth in these cell types is accompanied by the loss of symplastic continuity between the two cell types (Duckett et al, 1994). It is therefore possible that cell signalling events involving plasmodesmatal movement of symplastic signals may play a role in the specification of cell fate in this tissue. Ethylene is a positive regulator of root hair development in Arabidopsis Ethylene is involved in a large number of developmental and stress related processes in plants (reviewed in Abeles, 1973; Yang and Hoffman, 1984; Kieber and Ecker, 1993; Zarembinski and Theologis, 1994; Ecker, 1995). Its biosynthetic pathway has been characterized in great detail and permits experimental manipulation of ethylene biosynthesis and perception (Yang and Hoffman, 1984). Methionine adenosyl transferase converts methionine to S-adenosyl methionine which is converted to 1-aminocyclopropane-lcarboxylate (ACC) by ACC synthase which is inhibited by aminoethoxyvinylglycine (AVG) (Adams and Yang, 1979; Liang et al, 1992; Rodrigues-Pousada et al, 1993). ACC is in turn converted to ethylene by ACC oxidase (Hamilton, Bouzayen and Grierson, 1991). The perception of ethylene is blocked by Ag+ which is thought to inhibit the binding of ethylene to its receptor (Beyer, 1976). The ethylene signal ACC ACC FIG. 2. Changes in the pattern of epidermal cell differentiation in different roots. A, Wild-type root in which root hair cells (hatched) are located in the cleft over the anticlinal walls of underlying cortical cells (white) and non-hair cells (black) are located over the outer periclinal walls of cortical cells. B, The phenotype of Ctrl roots in which hair cells (hatched) differentiate in the position normally occupied by non-hair cells. C, Epidermal pattern in roots treated with the positive regulator of root hair development, ACC, showing hair cells (hatched) in the locations normally occupied by non-hair cells. D, The epidermis of roots treated with the inhibitor of ethylene biosynthesis AVG is composed entirely of non-hair cells. transduction pathway has been characterized genetically and provides a number of mutant backgrounds in which to examine the role of ethylene in epidermal development (Bleecker et al, 1988; Guzman and Ecker, 1990; Harpham et al, 1991; van der Straeten et al, 1993; Roman et al, 1995). Plants carrying recessive mutations of the CONSTITUTIVE TRIPLE RESPONSE1 gene of Arabidopsis have short hairy roots indicating that the wildtype gene is a negative regulator of root hair cell development (Fig. 2B) (Kieber et al, 1993). Ctrl plants behave as though they constitutively respond to ethylene in so far as they have an exaggerated hypocotyl hook, short hypocotyl and root when grown in the darkness. Sectioning of these Ctrl roots reveals that these roots appear hairy not only because the epidermal cells are short resulting in the development of a larger number of root hairs per unit length of root, but also because a large portion of the hair cells develop in ectopic locations (over the periclinal walls of underlying cortical cells) (Dolan et al, 1994). Since the CTR1 gene is a negative regulator of the ethylene response it follows that ethylene is probably a positive regulator of root hair cell development. The CTR1 gene encodes a kinase of the Raf family (Kieber et al, 1993). Such proteins may be involved in signalling through a number of distinct signalling cascades within an individual cell (Neiman, 1993). It was therefore necessary to show that ethylene is a positive regulator of hair cell development and that the CTR1 phenotype is not the result of abnormal signalling in some other signalling cascade which also includes CTRL 550 Dolan—Pattern in the Root Epidermis Since the synthesis of ACC is considered to be the rate limiting step in ethylene biosynthesis the growth of roots in the presence of ACC mimics treatment with ethylene (Yang and Hoffman, 1984; Guzman and Ecker, 1990). Roots grown in the presence of ACC developed hair cells in ectopic locations, over the periclinal cell walls of cortical cells (Fig. 2C) (Tanimoto, Roberts and Dolan, 1995). If ethylene were a positive regulator of root hair cell development then it might be expected that the inhibition of ethylene biosynthesis by AVG, and its perception of Ag+ would result in the development of fewer root hair cells (Fig. 2D). Both treatments result in the development of fewer root hair cells in a concentration dependent fashion (Tanimoto et al., 1995). Recessive mutations in the ROOT HAIR DEVELOPMENTS (RHD6) gene decrease the number of root hair cells that develop (Masucci and Schiefelbein, 1994). This phenotype closely resembles the morphology of roots treated with AVG and can be partially rescued by ACC. It remains to be seen if the RHD6 gene is involved at the level of ethylene biosynthesis or perception. Nevertheless it clearly plays an important role in the development of hair cells. These results are consistent with ethylene being a positive regulator of root hair development. An important feature of these results is that upon external application of ethylene any cell in the epidermis can develop as a root hair cell. This suggests that during normal development certain cells in the epidermis are exposed to the inductive ethylene signal while others are not. Those cells that are exposed to ethylene develop as hair cells and those that are not develop as nonhair cells. The non-hair cell state might then be considered the default pathway. Since those cells that respond to ethylene and consequently form root hairs lie over the cleft between two underlying cortical cells it is tempting to think that the differential exposure to the positive inductive signal results purely from the position of these cells (due to the cellular geometry) relative to a signal originating from within the root. Reciprocal regulation of hair development in roots and shoots A number of genes involved in the development of hair cells of the shoot—trichomes—have been identified by mutation (Hiilskamp, Misera and Jiirgens, 1994). Two positive regulators of trichome development, GLABRA1 (GL1) and GLABRA2 (GL2) have been cloned (Oppenheimer et al., 1991; Rerie, Feldman and Marks, 1994). They encode transcriptional regulators of the myb and homoedomain families, respectively. TRANSPARENT TESTA GLABRA (TTG) is a further positive regulator of trichome development, that as yet remains uncharacterized at the molecular level (Koornneef, 1981). Since the role of these genes in the development of hairs in the shoot epidermis has been well characterized it was an obvious place to start looking for potential regulators of hair development in the root. Recessive alleles at the GL2 and TTG loci produce root hair cells in ectopic locations (Dolan, unpubl. res.; Galway et al., 1994). In addition, the cellular organization of ttg root tip is abnormal, resembling roots in which the quiescent centre is absent (Galway et al., 1994; Dolan unpubl. res.). Nevertheless ttg plants go on to form roots with normal cellular architecture. It is not clear if the abnormal cellular organization is causally related to the ectopic root hair phenotype or whether it is simply an unrelated pleiotropic effect since ttg is known to have a number of such effects in other parts of the plant (ttg plants lack trichomes, anthocyanin and seed mucilage) (Koornneef, 1981). Constitutive expression of the maize R-Lc gene using the Cauliflower mosaic virus 35S promoter in Arabidopsis has been shown to complement the ttg defect in trichome development (Lloyd, Walbot and Davies, 1992). 35S-R-Lc expressing plants form many more trichomes than wild-type and in locations that are usually devoid of trichomes. This suggests that this gene acts at or after ttg in the developmental pathway leading to the development of trichomes. As might be expected, constitutive expression of the 35S-R-Lc gene in roots results in the development of fewer root hair cells (Galway et al., 1994). Roots of ttg plants, expressing 35S-R-Lc are hairless again indicating that the R-Lc effect occurs at or later than ttg in the developmental pathway (Galway et al., 1994). A M O D E L FOR E P I D E R M A L P A T T E R N I N G IN THE ARABIDOPSIS ROOT The mechanism of cell patterning in the root epidermis involves ethylene, its biosynthetic genes and genes involved in ethylene signal transduction. In addition, there are negative regulatory genes of hair cell development that are also involved in the development of shoot trichomes. Many genes remain to be identified since mutant screens are still far from saturated. The arrangement of these genes in a meaningful pathway requires their epistatic interactions to be determined. Unfortunately the results of these studies are not yet available. In the absence of such data we must piece together the available information as best we can to provide an explanation for the development of pattern in Arabidopsis root epidermis. All cells in the epidermis of Ctrl roots lack or have reduced levels of CTR1 activity. Since cells in any location in the epidermis of such roots develop as hair cells it suggests that CTR1 is inactive in root hair cells and active in the non-hair cells during wild-type development. The formation of hairs in the epidermal cells overlying the cleft between underlying cortical cells suggests that CTR1 is inactivated in cells in this location. Genetic analysis of the ethylene signal transduction cascade indicates that ethylene signalling involves the ETR1 mediated inactivation of negative regulator CTR1 (Bleecker et al., 1988; Chang et al., 1993; Chang and Meyerowitz, 1995). Since we predict that CTR1 is active in cells over cortical periclinal walls it suggests that these cells are not exposed to inactivating effects of ethylene during wild type development. Cells in the cleft between underlying anticlinal cortical cell walls on the other hand appear to be exposed to ethylene which thereby inactivates CTR1 resulting in the production of a root hair cell during normal development. Consistent with this interpretation is the observation that cells that normally fail to make hairs do so upon exposure Dolan—Pattern in the Root Epidermis ACC/Ethylene FIG. 3. Model of epidermal differentiation in Arabidopsis. Differential stimulation of epidermal cells by ethylene as a result of differential sensitivity or differential exposure result in the inactivation of CTR1 in the cell lying in the cleft, resulting in the development of a hair cell in this position. GL2 and TTG are not included in this figure since their site of action is unknown. to ethylene. In addition, blocking either the synthesis or perception of ethylene with either AVG or silver inhibits the development of hair cells in any location. The pattern of hairs in the Arabidopsis root epidermis may be in part explained by differential exposure of epidermal cells to ethylene (Fig. 3). This differential exposure may be a consequence of the cellular architecture of the root since cells lying over the space between underlying cell files are exposed to the signal. Analysing the pattern of expression of ethylene biosynthetic genes will be instructive in this respect. It also remains to be seen what the putative diffusible signal is. Is the signal ACC or ethylene? Our model predicts that whichever it is, it may move through the intercellular space between underlying cortical cells. ACC has been shown to move over large distances in the apoplast and ACC oxidase activity has been localized to the intercellular space (Bradford and Yang, 1980; Latche et al, 1992). The synthesis of ACC in the procambium, in response to an auxin flux signal for example, and its subsequent radial diffusion through the intercellular space would result in the exposure of epidermal cells lying over the cleft to relatively high ACC levels which may then be converted by ACC oxidase to ethylene which may act locally. While a genetic and physiological role of ethylene suggests that potentially mobile signals, such as ACC or ethylene, may be involved in regulating pattern in the root epidermis, the analysis of ttg and gl2 mutations suggests that these genes regulate such signalling events, act downstream of such signalling events or are involved in parallel. For example if they act upstream, they may regulate the pattern of ethylene biosynthesis in the root or the sensitivity of different epidermal cells to ethylene. If they act downstream, they may be transcriptional regulators that are inactivated or transcriptionally repressed by ethylene in developing hair cells. They may also act in parallel, with both signalling pathways playing independent roles in the establishment of pattern. Since GL2, a positive regulator of trichome development, is highly expressed in trichomes and is a negative regulator of root hair development we predict that it and perhaps TTG are expressed in the non-hair files. Ongoing studies will provide an insight as to how these genes interact with ethylene. Surgical experiments in which the developing epidermis 551 of Sinapis alba (Brassicaceae) was removed from underlying cells resulted in the development of extranumerary hair cells on the epidermis (Bunning, 1951; Barlow, 1984). These observations suggest that during normal development, hair cells are isolated from surrounding cells and thereby fail to receive the signal that induces the development of non-hair cells. Bunning (1951) concluded that the hair cell fate is the default state. An alternative explanation might be that more cells are exposed to the positive regulator of hair differentiation in surgically removed epidermis and that the nonhair cell fate is the default state. Such a model would be in agreement with our model. In addition it is possible that the production of ethylene in response to injury might be expected to induce the development of ectopic root hair cells. Ethylene is a positive regulator of hair development in many species Our genetic and physiological studies clearly implicate ethylene as playing a central role in the development of pattern in the root epidermis of Arabidopsis. Since Arabidopsis exhibits Type 3 hairs so characteristic of the Brassicaceae it seems likely that it plays a positive regulatory role in root epidermal development of other members of this family. It is important to determine if the same signals are involved in the establishment of epidermal pattern in species that exhibit different modes of epidermal development. Cormack (1937) identified ethylene as a potent inducer of root hair cell development of a Elodea canadensis (Type 2). In addition we have shown that blocking the ethylene synthesis or perception inhibits the development of hairs in the barley (Hordeum vulgare) (Type 2) (A. Barrett and L. Dolan, unpubl. res.). Ethylene has been shown to be a possible positive regulator of root hair cell development in a number of dicotyledonous species exhibiting Type 1 development (Abeles, 1973). It remains to be seen if ethylene is a positive regulator of root hair cell development among members of the Lycopsida (clubmosses), Sphenopsida (horsetails) and the Filopsida (ferns). Insight into the role of ethylene in the development of root hair cells in these systems will provide important insights into evolution of the role of ethylene in epidermal patterning in plants. If ethylene is a positive regulator of root hair cell development in a wide range of species, how then can we account for the differences in epidermal pattern observed in these diverse groups of plants? Our model suggests that the Arabidopsis pattern may emerge from restricted exposure of epidermal cells to endogenously produced ethylene or by the exposure of cells with different sensitivity to the ethylene/ACC signal. Hair cells in the tomato root epidermis undergo Type 1 development, i.e. any cell can form a root hair. Root epidermal pattern might be explained in tomato if the pattern of ethylene biosynthesis is less restricted in this species than that proposed above for Arabidopsis. Consequently cells, irrespective of their position relative to underlying cells, receive the inductive signal. It may be that ethylene is only part of the story, as indeed it may be in Arabidopsis, since it is possible that ethylene and TTG/GL2 interact to specify epidermal pattern. Cellular geometry 552 Dolan—Pattern in the Root Epidermis may also be involved since the arrangement of cortical/ endodermal cells is irregular in tomato, unlike Arabidopsis, where anticlinal cell walls in the cortex and endodermis are arranged opposite each other and therefore form a direct conduit between the stele and the epidermis (Cormack, 1947). CONCLUSIONS Leavitt (1904) described the differences in the patterns of cell differentiation in the root epidermis of vascular plants. Recently we have made steps towards a mechanistic understanding of how patterning is established in Arabidopsis. Genes encoding transcription factors and elements of the ethylene signal transduction cascade have indicated that ethylene or its precursor may be a diffusible signal involved in the generation of the spatial pattern. The examination of the role played by homologous genes from other species with different patterns of epidermal cells will elucidate the mechanism underpinning these other patterns and how the mechanism has been modified during evolution. ACKNOWLEDGEMENTS I would like to thank my co-workers in the Root Development Group for their invaluable help. In addition I would like to thank Joe Ecker, Joe Kieber, Keith Roberts and John Schiefelbein for invaluable discussions. I am also most grateful for the critical comments of two anonymous referees. LITERATURE CITED Abeles FB. 1973. Ethylene in plant biology. New York: Academic Press. Adams DO, Yang SF. 1979. Ethylene biosynthesis: identification of 1aminocyclopropane-1-carboxylic acid as an intermediate in the conversion of methionine to ethylene. Proceedings of the National Academy of Sciences USA 76: 170-174. Barlow PW. 1984. Positional controls in plant development. In: Barlow PW, Carr DJ, eds. Positional controls in plant development. 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