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1 IMAGE REGISTRATION IN VETERINARY RADIATION ONCOLOGY: INDICATIONS, 2 IMPLICATIONS AND FUTURE ADVANCES 3 4 Yang Feng1, 2, Jessica Lawrence2, Kun Cheng1, Dean Montgomery1, Lisa Forrest3, Duncan B. 5 McLaren1, Stephen McLaughlin4, David J. Argyle2, William H. Nailon1 6 7 1 8 Western General Hospital, Edinburgh, UK. 2The University of Edinburgh, Royal (Dick) School 9 of Veterinary Studies and Roslin Institute, UK. 3The University of Wisconsin-Madison, 10 Department of Surgical Sciences, 2015 Linden Drive, Madison WI, USA. 4Heriot-Watt 11 University, School of Engineering and Physical Sciences, Edinburgh, EH14 4AS, UK. The University of Edinburgh, Department of Oncology Physics, Edinburgh Cancer Centre, 12 13 Keywords: Oncology, Image Registration, Computed tomography, Radiation therapy, Magnetic 14 resonance imaging 15 Running Head: Image Registration in Radiation Oncology 16 Funding Sources: This work was generously supported by NHS Lothian, Edinburgh and 17 Lothians Health Foundation (charity number SC007342), the James Clerk Maxwell Foundation, 18 the Jamie King Uro-Oncology Endowment Fund, a University of Edinburgh Darwin Award and 19 a University of Edinburgh Individual Stipend. 20 Previous Abstracts: Material has not previously been presented. 1 21 Abstract 22 The field of veterinary radiation therapy (RT) has gained substantial momentum in recent 23 decades with significant advances in conformal treatment planning, image-guided radiation 24 therapy (IGRT) and intensity-modulated (IMRT) techniques. At the root of these advancements 25 lie improvements in tumor imaging, image alignment (registration), target volume delineation, 26 and identification of critical structures. Image registration has been widely used to combine 27 information from multi-modality images such as computerized tomography (CT), magnetic 28 resonance imaging (MRI) and positron emission tomography (PET) to improve the accuracy of 29 radiation delivery and reliably identify tumor-bearing areas. Many different techniques have 30 been applied in image registration. This review provides an overview of medical image 31 registration in RT and its applications in veterinary oncology. A summary of the most commonly 32 used approaches in human and veterinary medicine is presented along with their current use in 33 IGRT and adaptive radiation therapy (ART). It is important to realize that registration does not 34 guarantee that target volumes, such as the gross tumor volume (GTV), are correctly identified on 35 the image being registered, as limitations unique to registration algorithms exist. Research 36 involving novel registration-frameworks for automatic segmentation of tumor volumes is 37 ongoing and comparative oncology programs offer a unique opportunity to test the efficacy of 38 proposed algorithms. 39 40 2 41 Introduction 42 Imaging data from multiple anatomical and functional imaging studies is becoming a routine 43 component of veterinary patient management for a variety of medical and surgical conditions. 44 Spanning from initial diagnosis to determining therapeutic options to assessing response or 45 recrudescence of disease, these data help direct decisions regarding disease management, 46 efficacy of treatment and patient outcome. While computed tomography (CT) and magnetic 47 resonance (MR) imaging are readily available in veterinary medicine, novel imaging techniques 48 such as molecular imaging offer complementary information to aid in disease recognition, extent 49 and treatment planning. In order to optimally use information gathered from these various 50 techniques, the data must be easily compared despite differences in image acquisition and 51 presentation. Image registration is defined as the process of aligning two or more images from 52 the same or different imaging modalities to allow for data mapping (data fusion) and 53 interpretation. While registration carries importance across imaging disciplines, the purpose of 54 this review is to provide a broad overview of image registration and data fusion techniques used 55 in radiation therapy (RT), given the high frequency with which it is utilized and radiation 56 oncologists’ reliance on registered images. While RT is the focus of the review, the principles 57 outlined for registration techniques can be broadly applied to non-oncologic applications. 58 It is estimated that greater than 60% of human patients with cancer will receive RT and 59 although there is no similar strong data in dogs and cats, RT has become a common therapeutic 60 modality in veterinary oncology.1 There is a large body of evidence supporting the use of RT for 3 61 optimal local tumor control, therefore identification of the tumor volume is of utmost importance 62 when determining a treatment plan or evaluating changes in tumor volume. In practice, medical 63 images acquired from different imaging modalities are used to guide the entire RT process from 64 the initial treatment plan to fractionated radiation delivery through to dose verification. While 65 radiation oncologists have always been guided by images in some form, the advent of image- 66 guided radiation therapy (IGRT) has revolutionized how integral images are to modern radiation 67 oncology. In a broad sense, IGRT may reflect any aspect of RT that utilizes imaging to improve 68 treatment, such as weekly or twice weekly portal imaging. In a stricter sense, IGRT refers to 69 contemporaneous functional and structural imaging to improve target delineation, adjust for 70 target motion and/or uncertainties in patient positioning, and potentially adapt treatment to the 71 response of the tumor during adaptive radiation therapy (ART).2 While radiation oncologists are 72 highly dependent on image registration to ensure that IGRT is successful at targeting tumor and 73 limiting dose to adjacent normal tissue, the underlying process is complex and often overlooked. 74 A typical IGRT process, using veterinary images as an example, where image registration is vital 75 in order to merge information from multi-modality images and therefore provide an accurate 76 guide for radiation delivery is illustrated in Fig. 1. 77 Image registration provides a geometric transform that makes it possible to map 78 information between the images, often with sub-pixel resolution. As the use of multimodality 79 image data in RT increases, medical image registration is essential to combine the information 80 from each modality. As a result, it has become a very active area of research.3 Images utilized in 4 81 RT can be registered to obtain comprehensive information regardless of patient positioning, time 82 point with respect to therapy, or type of imaging acquisition.. Registration may also be used to 83 combine multiple images from the same imaging modality,4 or to combine information from 84 multiple modalities such as CT, MR imaging, positron emission tomography (PET) and single- 85 photon emission computed tomography (SPECT).5 For the purpose of this review, areference 86 image is defined as the source image containing the reference information, while a target image 87 is defined as the movable image spatially matched to the reference. After registration, 88 information from the reference image, such as contoured structures, can be used on the target 89 image. 90 Image registration methods have been widely used both in human medicine6-11 and in 91 preclinical studies12-18 to improve matching between images acquired on different modalities 92 such as PET andMR,19 SPECT andCT,20 and PET andCT.21 Registration approaches applied to 93 humans are also suitable for companion animals.22-31 and may prove useful in comparative 94 oncology, which refers to the study of cancer etiology, biology and treatment in companion 95 animals that develop spontaneously-occurring cancer.1, 32-34 Comparative oncology presents a 96 unique opportunity to improve RT for both human and veterinary patient groups given the 97 number of similarities in tumor biology, imaging techniques and therapeutic modalities. Image 98 registration methodologies, regardless of the species imaged, will help facilitate this by finding 99 the optimal geometric transformation between corresponding image data.35 5 100 In general, an image registration algorithm can be divided into four parts: image 101 conditioning, geometric transformation, similarity function and optimization (Fig. 2). Any step 102 that alters the original data to make it more suitable for applying image registration is known as 103 image conditioning. Due to the diversity of the methods used for this, a comprehensive review of 104 image conditioning falls outside the scope of this manuscript but may be found elsewhere.5, 36-37 105 106 Image Registration 107 Table 1 provides a comprehensive list of the most commonly used terminology in image 108 registration.5 Key technical details of the transformation function, similarity function and 109 optimization process (Fig. 2) are introduced in this section. 110 111 Transformation 112 As it is common for patient orientation and immobilization to vary between imaging studies, the 113 first essential component of registration is transformation. This describes the geometrical shift 114 that is required for the target image to match it to the reference image. Rigid transformation 115 methods are most commonly used and are usually applied on images that have no distortion, 116 such as CT to CT. Generally, a rigid geometric transformation can be achieved by translation and 117 rotation and is commonly used to match between bones on medical images, such as the skull.38-39 118 An affine transformation, which is an extension of the rigid transformation, allows for rotations, 6 119 translations, scaling and shearing.40 Rigid transformations can also be applied before a non-rigid 120 registration as an image conditioning step.41-42 121 The assumption that rigid movement of anatomy occurs globally is incorrect in any 122 number of situations, therefore limiting widespread use of rigid registrations for sites other than 123 the head.40 Most non-rigid registration methods are based on deformable models. These range in 124 complexity and may vary from simple with relatively few parameters tocomplicated where each 125 point or voxel moves independently.40 There are two directions in deformable registration: free 126 form deformable registration (often abbreviated FFD) and guided deformable registration, which 127 are controlled by models based on prior knowledge of the registered objects or organs. The 128 fundamental difference between them is that the free form deformable registration allows any 129 deformations by moving the positions of its control grid. The most commonly used guided 130 deformable registration methods are elastic-based and flow-based. Elastic-based methods treat 131 organs as elastic solids and define two forces: internal forces that oppose the deformation and 132 external forces that try to deform the images. The best transform can be obtained by finding 133 equilibrium between both internal and external forces. Flow-based methods such as fluid flow 134 and optical flow treat registration as a motion problem and therefore achieves the best match by 135 meeting a pre-set constraint in a physical model. The application of the popular B-spline based 136 FFD method registering pre- and post-treatment CT images of a dog with a sinonasal tumor is 137 demonstrated in Fig 3.43 A similar method called thin-plate spline (often abbreviated TPS) can 7 138 also generate FFD registration. However, compared to the B-spine method this approach is 139 limited by the fact that the deformation is applied globally. 44 140 141 Similarity Function 142 The transformation, or alignment, of the image datasets is assessed by measuring the similarity 143 between them.40 There are two predominant similarity measurements: intensity-based and 144 feature-based measurements. The most popular intensity-based similarity function is based on 145 intensity difference or intensity correlation. Feature-based similarity functions depend on the 146 feature structure extracted, such as anatomic structures (bones) or artificial landmarks (fiducials). 147 Most feature-based algorithms use points, lines, or surfaces for matching.40, 45-46 A minimum of 148 three or four pairs of points are required in order to compute the rotations and translations for a 149 rigid or affine transformation.40 Unlike point matching, line and surface matching do not require 150 a one-to-one match between images but rather attempt to maximize the overlap between 151 equivalent lines and surfaces such as the skull surface, ribs or pelvis.40, 45-46 The transformation 152 process and the corresponding similarity calculation used in the registration of images from a 153 dog with a nasal tumor is illustrated in Fig 4. 154 155 Optimization 156 Optimization is the process used to search for a numerical value produced by the similarity 157 function, which is indicative of when the best match between the images has been found. The 8 158 goal of the optimization algorithm is to find a maximum or minimum value of the similarity 159 measure accepted; it is common for optimal registration to be accomplished when the similarity 160 measures are defined by their minimal value. It is an important step in a registration method 161 because the similarity function can often produce several local minima, which produces sub- 162 optimal results. 163 164 Assessment 165 The obvious motivation for registering images from different studies is to map clinically useful 166 information from one study onto another, for example in treatment planning prior to radiation 167 delivery. If data can be successfully fused, radiation oncologists can then map tumor volumes 168 such as the GTV, clinical target volume (CTV) and planning target volume (PTV) or organs at 169 risk (OAR) directly onto the CT needed for dose calculations (structure mapping).40 Therefore, 170 relying on the ability of a bespoke software system to adequately register images is of utmost 171 importance in order to adhere to current radiation guidelines – namely to appropriately outline 172 tumor volumes and limit normal tissue toxicity. In this vain, it is important to realize the 173 difficulties in accurately validating the performance of a complex registration method. In some 174 cases, a registration algorithm can be assessed using phantom data,47 but this is not commonly 175 done as performance on phantoms cannot ensure comparable performance on clinical cases. A 176 commonly used approach is to use synthetic images on which manual definition of 177 corresponding points such as fiducial markers provides a straightforward assessment of a 9 178 registration method.48-49 The Dice coefficient, which measures the overlap between clinical and 179 registered contours, places a numerical value on the registration accuracy.50-51 Within the range 0% 180 to 100%, a Dice value of 100% indicates excellent geometric agreement while a Dice value of 0% 181 represents poor geometric agreement (Fig. 5). The Jaccard index and Tanimoto coefficient (both 182 vary from 0% to 100%), which can be calculated directly from the Dice coefficient, are also used 183 to measure the similarity between regions. However, they need prior knowledge (contours of the 184 same region) on both reference and target images. 185 Once the registration process has been completed, there are a number of techniques that 186 can be used to visualize fused data, including the use of overlays, pseudo-coloring, grey scale 187 coloring, and side-by-side display of anatomic planes.40 This allows the radiation oncologist to 188 evaluate the fused images and to map calculated 3D dose distributions from the CT treatment 189 plan to the coordinate system of another imaging study, such as MR. Not only is this helpful to 190 define the tumor and normal tissue dose for tissues that are not optimally imaged with CT (such 191 as canine or feline intracranial tumors), but the fusion of 3D dose distributions to post-treatment 192 imaging scans to improve detection and understanding of radiation changes over time (Fig. 5). 193 As veterinary radiation oncology advances into the realm of IGRT and ART with the use of 194 volumetric imaging systems (on-board kilovoltage CT or megavoltage CT units), the concept of 195 accurate registration becomes increasingly critical. 196 197 Current State of Image Registration in Veterinary Radiation Oncology 10 198 Image registration and data fusion are useful in veterinary radiation oncology with most 199 modern treatment planning systems now facilitating the use of a secondary datasets for target and 200 OAR delineation. It is also possible to map dose information to the secondary dataset following 201 an appropriate registration. 202 Dose distributions generated for conformal radiation therapy (CRT) have been accurately 203 predicted with CT-based treatment planning systems and are already widely used in veterinary 204 oncology.53 CT data includes the Hounsfield units as a linear transformation of radiation beam 205 attenuation that varies with electron densities of materials as the beam progresses through tissue. 206 Most RT planning software obtains the relative electron density from the relationship between 207 the linear attenuation coefficients and Hounsfield unit values in order to determine heterogeneity 208 in the dog or cat’s body. Non-contrast CT images are typically utilized for treatment planning, 209 given that contrast agents are high-Z radio-opaque materials, which would attenuate a radiation 210 beam more than normal, resulting in higher than normal electron density. Post-contrast CT data 211 used for a treatment plan would theoretically give rise to higher monitor unit (MU) values, and 212 therefore radiation dose, compared to MU values taken from calculating a plan using pre-contrast 213 CT data. As veterinary radiation oncologists often use commercially available human treatment 214 planning software, automatic registration methods may be built-in to the software, although other 215 “in house” registration algorithms may be adapted for use.22, 24-29 One of the most common 216 automatic registrations used in routine treatment planning is the merging of pre-contrast and 217 post-contrast CT data in order to delineate the GTV, CTV, PTV and OAR. Because regions of 11 218 interest are often best identified on post contrast CT images, many commercial software 219 programs (such as Eclipse™, Varian Medical Systems, Palo Alto, used at the authors’ 220 institutions) automatically permit DICOM-coordinated registration and facilitate contouring on 221 fused multimodality images. However, there are often limited registration capabilities between 222 multimodal image acquisitions; our current planning system is capable of a fully automatic, 223 mutual-information-based rigid registration but results are often unsatisfactory between 224 modalities (i.e. CTs obtained with different DICOM origins or MRI and CT data acquired with 225 vastly different animal positioning). Automatic registration partially eliminates a potential 226 source of error as radiation oncologists historically may have estimated tumor volume on the pre- 227 contrast CT data based on visual examination of alternative imaging studies. Upon evaluation of 228 the veterinary literature to date, it is often difficult to firmly understand how tumor volumes were 229 identified prior to treatment; for example in one study evaluating RT for canine intracranial 230 tumors, the GTV was defined on planning CT scans by the contrast-enhancing area on CT or MR 231 data.54 It is presumed that contours for the GTV were drawn on pre-contrast CT images after 232 evaluation of diagnostic scans, however this presumption may be incorrect. In most other 233 veterinary studies, it is unclear how the GTV was derived, as irradiated volumes have been 234 inconsistently defined.52 The delineation of target volumes is paramount to effective RT, as 235 geographic miss could occur if the GTV, CTV and PTV are ineffectually contoured and/or 236 unexpected toxicity could result from a poorly defined OAR. Proper radiation reporting is also 237 critical to permit reproducibility of clinical studies across institutions.52 It is also important to 12 238 note that dose distributions generated by treatment planning are estimated dose distributions, 239 thereby introducing an additional uncertainty to planning. The variation in registration methods 240 introduces bias that could lead to erroneous conclusions about the extent and location of various 241 volumes compounded by variations in dose distribution algorithms. As veterinary reporting of 242 RT planning improves, information regarding registration should be included. 243 In addition to RT planning, image registration has made its way into the routine 244 assessment of daily patient positioning, enabling better tumor targeting.25-29, 55-57 One of the key 245 concepts of IMRT, stereotactic radiation therapy (SRT) or radiosurgery (SRS) and IGRT 246 planning is that tight dose constraints are placed around the PTV provided the clinician is 247 confident that the animal’s positioning will be reproducible during treatment. One of the most 248 common practices immediately prior to treatment delivery is to generate a pair of orthogonal 249 digitally reconstructed radiographs (DRRs) from the planning CT and to register simulated 250 radiographs with MV radiographs acquired by a flat-panel imager (electronic portal imaging 251 devices or EPIDs) attached to the linear accelerator (Fig. 6).55,56 More advanced on-board 252 imaging equipment involves cone-beam CT systems or helical CT systems built into the 253 treatment unit.25-29, 57 Automated image registration at the treatment unit can determine the 254 rotations and translations required to align the datasets, thus decreasing some of the variability 255 with daily patient setup and intra-patient shifts.25-29, 40 Challenges still exist with registration of 256 different modalities with different positioning and therefore fiducials and other landmarks may 257 be needed to improve alignment (Fig. 7). Dose delivered to patients throughout a treatment 13 258 protocol also rely on accurate patient positioning and registration (i.e. daily cone beam CT 259 registered with treatment-planning CT) in order to sum dose delivered over time; monitoring of 260 dose deviations from the expected distribution allows for intra-treatment adjustments in order to 261 better target tumor yet limit normal tissue dose. Little veterinary literature has evaluated the 262 utility or validity of various registration algorithms other than an early study demonstrating an 263 in-house computer program that was developed for brain imaging.22 This study highlighted the 264 widespread potential of image registration by evaluating corresponding images from CT and 265 MR, CT images before and after surgical treatment, and CT and post-mortem cryosection images 266 in dogs or cats.22 Currently at our institution, for follow-up imaging, standardized response 267 criteria are applied when assessing tumor response following treatment.58 Responses for tumors 268 of the head and neck (intracranial, sino-nasal, cervical) are often assessed by the radiology and 269 radiation oncology team on serial CT scans, without consideration for image registration over 270 time, which may not accurately reflect the response of the tumor or the assessment of treatment- 271 induced toxicity.27 Toxicities are often inferred by tissue changes, however easier 272 implementation of image registration in the clinic may provide more objective information 273 regarding tumor and normal tissue changes following radiation, particularly as varying 274 fractionated protocols are used across veterinary radiation oncologists.52,53,59,60 275 With the incorporation of functional imaging into veterinary oncology, determination of 276 structural and, indirectly, pathological changes may be better assessed. Changes such as fibrosis 277 and tumor recurrence can be difficult to distinguish on CT and MR; functional imaging with PET 14 278 may help clarify differences and alter future therapy. Currently in veterinary medicine, 2-deoxy- 279 2-[18F]-fluoro-deoxyglucose (FDG), 3’-deoxy-3’-[18F]-fluorothymidine (FLT), and copper(II)- 280 diacetyl-bis (N4-methylthiosemicarbazone) (Cu-ATSM) have been used to assess various 281 neoplastic conditions in dogs and cats.61-70 In particular, several studies have evaluated functional 282 imaging over time in an attempt to correlate pre-treatment scans to post-treatment scans; ideal 283 comparisons would require registration of image datasets to avoid interpretation errors.67-70 One 284 study that assessed pre-radiation therapy FDG, FLT and Cu-ATSM PET/CT scans to post- 285 treatment FDG PET/CT scans demonstrated the complexity and utility of registration methods in 286 dogs with sinonasal tumors.70 Dogs in this study underwent a radiation-planning CT scan that 287 served as the reference dataset; bony anatomy from pre-radiation PET/CT scans was registered 288 to the bony anatomy of the radiation-planning CT; rigid registration using cross-correlation 289 resulted in affine transformations that were applied to the corresponding PET images. The 290 translated and rotated PET matrices were subsequently resampled using a spline filter defined by 291 the reference PET image that was obtained at the same time as the treatment-planning CT.70 292 While complex, the registration process ensured that each voxel index of the pre-treatment 293 PET/CT scans corresponded as closely as possible to the same region in the post-treatment FDG 294 PET image for each patient, enabling assessment of changes in tracer uptake.70 Imaging and 295 registration advances will undoubtedly lead to more work being performed in a similar fashion 296 and may alter current criteria for response assessment and/or response prediction. 297 15 298 Proposed Advances in Veterinary Image Registration 299 In general, RT is delivered to patients over the course of several weeks in both human and 300 veterinary oncology. While the GTV, CTV and PTV are currently considered standard targets in 301 radiation oncology, the PTV is created to make sure that dose plans are robust to uncertainties.71 302 The GTV and CTV are oncological-anatomical concepts, which are heavily dependent on the 303 experience and judgment of the radiation oncologist and radiologist. The PTV, on the other hand, 304 is a geometrical scheme used for treatment planning in order to ensure that the prescribed dose 305 targets the CTV.71 Alternatively, one might view the PTV as decreasing the risk that patient 306 positioning, setup uncertainties, and OAR or target position uncertainties will lead to a severe 307 under-dosage of the CTV. As the impact of setup uncertainties decreases with IGRT, the CTV to 308 PTV margins may be reduced, thus decreasing normal tissue toxicity. Taking this a step further, 309 if diagnostic imaging, interpretation, and registration with the initial treatment plan are 310 performed frequently while a patient is on therapy, the treatment plan can be “adapted” to 311 optimize tumor control and minimize normal tissue damage. 312 ART is defined as changing a radiation plan during RT to account for anatomy or biology 313 changes of the patients.72 Studies have shown clear advantages and gains in clinical application 314 of adaptive radiation therapy. However, clinical implementation is limited as ART is time- 315 consuming and places an additional workload on clinicians to quickly contour follow-up images 316 manually. Adaptive planning could be used at different fractions (off-line) and at different time 317 points within one fraction (on-line).73 Identifying changes in the GTV between images acquired 16 318 for the purpose of RT planning and images acquired for the purpose of assessing response to RT 319 is challenging. This is mainly because of: 1. uncertainties of soft tissues and internal organ 320 motion;74 2. the response of the GTV to radiation or other treatments is difficult to predict, which 321 may cause anatomical changes;75 3. distortions or contrast variability between different 322 modalities, which makes it difficult to register the information between multi-modality images.76 323 To overcome these difficulties, image guided adaptive radiation therapy (IGART) is the most 324 reliable method for a comprehensive ART approach.77 Research into known, documented 325 uncertainties in soft tissue and organ motions in prostate,78 head and neck79 and lung80 is well 326 developed and directly impact ART approaches. Furthermore, registration methods that combine 327 information and realize deformable mapping between structural and functional images are 328 essential to make individualized IGART rapid and feasible.81 329 330 331 Conclusion In its simplest context, image registration simply refers to the comparison of one dataset 332 to another. The complexity behind making quantitative use of this imaging data has been 333 reviewed here, illustrating that it is necessary to determine the transformations needed to relate 334 coordinates of one dataset to another. The impact of image registration on RT from treatment 335 planning to image-guided delivery to post-treatment follow-up is enormous and has already 336 impacted veterinary patients. 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Med Phys. 2003;30(9):2274-81. 29 567 30 568 569 Tables Table 1: The Classification Of Registration Method By Maintz And Viergever In 1998.5 Criteria Classification I. Dimensionality A. Spatial dimensions only: 2D-2D; 2D-3D; 3D-3D B. Time series (more than two images), with spatial dimensions: 2D-2D; 2D-3D; 3D-3D II. Nature of Registration Basis A. Extrinsic: 1. Invasive (stereotactic frame, fiducials); 2. Noninvasive (mould-frame, dental adaptor) B. Intrinsic: 1. Landmark based; 2. Segmentation-based; 3. Voxel-property-based C. Non-image based III. Nature of Transformation A. Rigid; B. Affine; C. Projective; D. Curved IV. Domain of Transformation A. Local; B. Global V. Interaction A. Interactive; B. Semi-automatic; C. Automatic VI. Optimization Procedure A. Parameters computed; B. Parameters searched for VII. Modalities Involved A. Mono-modal; B. Multimodal; C. Modality to model; D. Patient to modality VIII. Subject A. Intrasubject; B. Intersubject; C. Atlas IX. Object A. Head; B. Thorax; C. Abdomen; D. Pelvis and peritoneum; E. Limbs; F. Spine and vertebrae 570 31 571 Figure Captions 572 573 Fig. 1. A typical flow chart of image-guided radiation therapy (IGRT), highlighting the need for 574 registration, using a canine nasal tumor as an example. Diagnostic images are obtained and 575 registered to the reference image for treatment-planning. Each fraction of radiation is 576 administered with the aid of an electronic portal imaging device (EPID) or cone-beam computed 577 tomography (CBCT) images that are registered to the treatment-planning reference image. 578 579 Fig. 2. A typical flow chart of image registration demonstrating the steps – transformation 580 function, similarity function, and optimization – that are required to obtain a registration result. 581 582 Fig. 3. An example of a B-spline control grid on the reference and target image of a dog with a 583 nasal carcinoma. This demonstrates a 20x20 control grid on pre-treatment and post-treatment 584 computed tomography (CT) (512x512) images (manually warped). 585 586 Fig. 4. The variability in the similarity function (SSD) is shown and demonstrated from canine 587 nasal tumor images when the transformation function (rotation) is applied on the target image 588 and makes it rotate around the reference image from -90° to +90°. The rotation degree was 589 defined as the angle between the directions of the reference (black) and the target (white) images. 32 590 As a result, the image in A illustrates an approximately -70° rotation while B illustrates an 591 approximately 30° rotation. 592 593 Fig.5. Illustration of a multi-step registration framework in a dog with a nasal tumor. Images 594 show registration of a pre-treatment computed tomography (CT) study with the post-treatment 595 CT 6 weeks after definitive intensity-modulated radiation therapy. The series demonstrates the 596 target image with the pre-treatment gross tumor volume (GTV) contour (blue), target GTV 597 contour (yellow) and an automatically generated contour using a multistep process (red). A 598 represents D1, registration between the original reference and the target contour; B represents 599 D2, registration between the rigid registered reference contour and target contour; C represents 600 D3, registration between non-rigid registered reference contour and target contour; D represents 601 D4, the final segmented result and target contour. The Dice coefficients increase following each 602 step in the registration framework as shown in Fig. 6: D1 = 42.65 %, D2 = 85.57%, D3 = 603 90.81%, D4 = 96.73%. 604 605 Fig. 6. Portal images obtained from a dog with a sinonasal tumor undergoing definitive intent 606 radiation therapy prior to 6 MV photon therapy with a linear accelerator (Varian 2100 CD; 607 Varian Medical Systems, Palo Alto, USA); orthogonal images were obtained and analyzed 608 immediately prior to treatment delivery. An on-board flat panel imager permits acquisition of the 609 dog’s position prior to treatment (image in the lower right), which can be compared with the 33 610 digitally reconstructed radiograph (DRR) obtained from the planning computed tomography (CT) 611 (image in the upper right). Images were evaluated using commercially available treatment 612 planning software (Eclipse v.11.0, Varian Medical Systems). The larger image on the left 613 demonstrates registration of the electronic portal image and the DRR. (A) Images were obtained 614 with the linear accelerator gantry at 0 degrees; the larger image on the left demonstrates 615 evaluation of the registered images using a “moving window” technique that allows the window 616 to move the DRR over the dog’s daily portal image. The orange graticule grid represents the 617 dog’s position at acquisition of the portal image while the green graticule grid represents shifts 618 needed in the dog’s position to match the ideal planning position. (B) Images were obtained 619 with the linear accelerator gantry at 90 degrees; the larger image on the left demonstrates 620 evaluation of the images using a “split window” technique, in which the central axis can be 621 moved to reveal more of the DRR image or the electronic portal imaging device (EPID) image as 622 needed. Manual alignment may be performed as was done here in which the daily image is 623 moved to match the DRR; alternatively semi-automated or point matching registration can be 624 performed. 625 626 Fig 7. A series of rigidly registered images acquired on a human patient treated for prostate 627 cancer highlighting the difficulty in interpreting critical structures in different imaging 628 modalities. T1- (A) and T2- (B) weighted MR images acquired on a Siemens Symphony 1.5T 629 scanner (Siemens, Munich, Germany) were registered to a radiotherapy planning CT (C) 34 630 acquired on a Philips Brilliance Big Bore CT scanner fitted with a flat couch. The hyper-intense 631 gold markers implanted within the prostate gland and used for positional verification are clearly 632 visible. The corresponding pre-treatment CBCT image (D) acquired on a Varian Clinac and used 633 for positional verification. Alignment is complete and treatment begins when the hyper-intense 634 markers are aligned on CT and CBCT. Soft tissue matching is difficult because of the atrophy 635 induced in the prostate by the neo-adjuvant hormones administered between MR and CT 636 acquisition. 637 638 639 640 35