Download MaxRel features

MaxRel features
Order
Score
Location
1
0.226
P2'
2
3
4
5
6
0.213
0.196
0.196
0.195
0.194
P2'
P2'
P2'
P2'
P1
7
0.193
P2'
8
0.193
P2'
9
0.192
P2'
10
0.19
P2'
11
12
13
14
15
16
0.189
0.184
0.183
0.183
0.18
0.18
P2'
P2'
P2'
P2'
P1
P1
17
0.177
P1
18
19
20
0.176
0.176
0.175
P2'
P2'
P1
21
0.168
P2'
22
23
24
25
0.168
0.167
0.163
0.16
P2'
P2'
P2'
P2'
26
0.159
P2'
27
28
29
30
31
0.158
0.158
0.158
0.158
0.158
P2'
P1
P1
P2'
P2'
32
0.158
P2'
33
0.158
P2'
Name
Normalized hydrophobicity scales for
alpha/beta-proteins
Normalized frequency of alpha-helix
Normalized hydrophobicity scales for beta-proteins
Normalized average hydrophobicity scales
Normalized frequency of middle helix
Normalized frequency of coil
Interactivity scale obtained by maximizing the mean of
correlation
the Chou-Fasman parameter of beta-sheet
Normalized frequency of bata-structure
Entire chain composition of amino acids in intracellular
proteins of
the Chou-Fasman parameter of beta-sheet
Normalized positional residue frequency at helix termini
N4'
Free energy in alpha-helical conformation
Alpha-helix propensity derived from designed sequences
Retention coefficient in HPLC pH7.4
Normalized frequency of alpha-helix in alpha+beta class
Weights for alpha-helix at the window position of 1
Membrane-buried preference parameters
The stability scale from the knowledge-based atom-atom
potential
Normalized frequency of alpha-helix in alpha/beta class
Retention coefficient in HPLC pH2.1
Transfer free energy CHP/water
Hydropathy scale based on self-information values in the
two-state model
Frequency of occurrence in beta-bends
Information measure for pleated-sheet
Normalized flexibility parameters
Beta-strand indices for alpha/beta-proteins
Information value for accessibility; average fraction
23%
Normalized frequency of turn
Optimal matching hydrophobicity
SWEIG index
Relative frequency in alpha-helix
Normalized frequency of alpha-helix with weights
Normalized positional residue frequency at helix termini
N3
Information measure for turn
34
0.157
P1
35
0.157
P1
36
37
38
39
0.156
0.155
0.153
0.152
P2'
P2'
P2'
P2'
40
0.149
P2'
41
0.149
P2'
42
43
44
45
0.149
0.148
0.148
0.147
P1
P1
P1
P2'
46
0.146
P2'
47
0.146
P1
48
49
50
51
52
0.146
0.145
0.144
0.144
0.144
P1
P2'
P1
P1
P1
53
0.144
P1
54
55
56
57
58
59
0.143
0.143
0.143
0.143
0.143
0.143
P1
P1
P1
P1
P2'
P2'
60
0.143
P1
61
0.142
P2'
62
0.141
P2'
63
64
65
66
67
0.141
0.141
0.141
0.141
0.14
P2'
P2'
P1
P2'
P1
Normalized hydrophobicity scales for beta-proteins
Knowledge-based membrane-propensity scale from 1D_Helix
in MPtopo databases
the Chou-Fasman parameter of
beta-sheet
Information measure for loop
Normalized frequency of alpha-helix
Normalized frequency of N-terminal beta-sheet
Normalized frequency of beta-sheet from CF
Normalized positional residue frequency at helix termini
C5
Normalized positional residue frequency at helix termini
N1
Normalized composition of mt-proteins
Aperiodic indices for beta-proteins
Beta-strand indices for beta-proteins
Normalized frequency of C-terminal beta-sheet
Normalized positional residue frequency at helix termini
N2
The relative stability scale extracted from mutation
experiments
Retention coefficient in NaH2PO4
Weights for beta-sheet at the window position of 1
Relative mutability
Normalized hydrophobicity scales for alpha-proteins
Relative preference value at N4
Hydrophobicity coefficient in RP-HPLC the Chou-Fasman
parameter of beta-sheet
Retention coefficient in NaClO4
Retention coefficient in TFA
Transfer free energy to surface
SD of AA composition of total proteins
Average interactions per side chain atom
Normalized frequency of beta-sheet
Hydrophobicity coefficient in RP-HPLC the Chou-Fasman
parameter of beta-sheet
AA composition of CYT of multi-spanning proteins
A parameter defined from the residuals obtained from the
best correlation of the Chou-Fasman parameter of
beta-sheet
Normalized frequency of alpha-helix from CF
Normalized frequency of alpha-helix
Scaled side chain hydrophobicity values
Dependence of partition coefficient on ionic strength
Hydrophobicity
68
69
0.14
0.14
P1
P2'
70
0.14
P1
71
72
73
74
75
76
77
78
79
0.14
0.139
0.139
0.139
0.139
0.139
0.138
0.138
0.134
P1
P1
P2'
P1
P1
P1
P2'
P1
P1
80
0.134
P2'
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
0.134
0.134
0.134
0.134
0.134
0.133
0.132
0.131
0.131
0.131
0.131
0.13
0.13
0.13
0.129
0.128
0.128
0.127
P1
P2'
P2'
P2'
P2'
P1
P2'
P1
P2'
P2'
P1
P2'
P1
P1
P2'
P2'
P2'
P2'
99
0.126
P2'
100
101
102
103
104
105
106
0.126
0.125
0.125
0.124
0.124
0.124
0.123
P1
P2'
P1
P2'
P2'
P2'
P2'
Transfer free energy from oct to wat
Alpha-helix indices for alpha/beta-proteins
Relative partition energies derived by the Bethe
aProximation
the Chou-Fasman parameter of
beta-sheet
Optimized relative partition energies - method A
Side-chain contribution to protein stability
Alpha-helix indices for beta-proteins
van der Waals parameter R0
Side chain orientational preference
Transfer energy organic solvent/water
Weights for alpha-helix at the window position of -4
Average reduced distance for C-alpha
Normalized relative frequency of bend R
Surface composition of amino acids in intracellular
proteins of mesophiles
the Chou-Fasman parameter of
beta-sheet
Transfer free energy to lipophilic phase
Helix termination parameter at posision j-2j-1j
Optimal matching hydrophobicity
SWEIG index
Isoelectric point
Weights for beta-sheet at the window position of -4
Average relative fractional occurrence in AR
Polar requirement
Normalized frequency of alpha-helix
Normalized frequency of beta-sheet in alpha/beta class
Effective partition energy
Net charge
Relative mutability
Normalized composition from animal
Weights for alpha-helix at the window position of -2
Weights for coil at the window position of 6
Normalized frequency of turn in alpha+beta class
Information measure for alpha-helix
Normalized positional residue frequency at helix termini
C4
Partition coefficient
Normalized frequency of alpha-helix
Solvation free energy
Relative preference value at C3
Unfolding Gibbs energy in water pH9.0
Normalized relative frequency of alpha-helix
Normalized frequency of beta-sheet from LG
107
108
109
110
111
112
113
114
115
0.123
0.123
0.122
0.121
0.12
0.12
0.119
0.119
0.119
P1
P1
P1
P2'
P2'
P2'
P2'
P2'
P1
116
0.119
P2'
117
118
0.119
0.118
P2'
P1
119
0.117
P1
120
121
0.117
0.116
P2'
P2'
122
0.116
P2'
123
124
125
126
127
128
0.116
0.116
0.116
0.116
0.115
0.115
P2'
P1
P1
P2'
P2'
P2'
129
0.115
P2'
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
0.115
0.115
0.114
0.114
0.114
0.114
0.113
0.113
0.113
0.113
0.112
0.112
0.112
0.112
0.112
P2'
P1
P1
P1
P2'
P1
P2'
P2'
P2'
P1
P1
P1
P2'
P2'
P2'
Transfer free energy
Retention coefficient at pH 2
Hydrophobicity factor
Helix termination parameter at posision j+1
Average reduced distance for side chain
Linker propensity from helical
Information measure for C-terminal turn
Free energy in alpha-helical region
ALTLS index
Surface composition of amino acids in intracellular
proteins of thermophiles
the Chou-Fasman parameter
of beta-sheet
pK-a
Average reduced distance for side chain
Information value for accessibility; average fraction
23%
Number of full nonbonding orbitals
Principal component II
Information value for accessibility; average fraction
35%
Average relative fractional occurrence in E0
Hydrophobicity-related index
RF rank
Weights for coil at the window position of -4
null
Polar requirement
p-Values of thermophilic proteins based on the
distributions of B values the Chou-Fasman parameter of
beta-sheet
Normalized flexibility parameters
Side chain hydropathy corrected for solvation
Retention coefficient in HPLC pH7.4
Retention coefficient in HPLC pH2.1
Normalized frequency of C-terminal helix
Normalized frequency of N-terminal non beta region
Normalized relative frequency of double bend
AA composition of CYT2 of single-spanning proteins
Loss of Side chain hydropathy by helix formation
PRILS index
Normalized average hydrophobicity scales
Principal property value z1
Optimized relative partition energies - method D
Optimized relative partition energies - method C
Optimized relative partition energies - method B
145
0.112
P2'
146
0.112
P2'
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
0.112
0.111
0.111
0.111
0.111
0.111
0.111
0.11
0.11
0.11
0.109
0.109
0.109
0.109
0.109
0.109
0.108
0.108
P2'
P2'
P1
P2'
P2'
P1
P1
P1
P2'
P1
P1
P2'
P2'
P2'
P2'
P2'
P2'
P1
165
0.108
P2'
166
167
168
0.107
0.106
0.105
P2'
P2'
P1
169
0.105
P2'
170
171
172
173
174
0.105
0.104
0.104
0.104
0.104
P1
P1
P1
P1
P1
175
0.104
P1
176
177
178
179
180
0.104
0.103
0.103
0.102
0.102
P1
P2'
P1'
P2'
P2'
181
0.102
P2'
Weights for beta-sheet at the window position of -3
Free energies of transfer of AcWl-X-LL peptides from
bilayer interface to the Chou-Fasman parameter of
beta-sheet
Normalized composition from fungi and plant
Normalized frequency of N-terminal non helical region
Retention coefficient in HFBA
Relative preference value at N3
Negative charge
HPLC parameter
Side chain hydropathy uncorrected for solvation
Average reduced distance for side chain
Information measure for N-terminal helix
Weights for beta-sheet at the window position of 6
Consensus normalized hydrophobicity scale
Weights for alpha-helix at the window position of -5
Normalized frequency of turn from CF
Normalized frequency of alpha-helix unweighted
Normalized frequency of alpha-helix from LG
Average relative fractional occurrence in AR
Transfer free energy from oct to wat
Propensity to be buried inside
Normalized positional residue frequency at helix termini
C1
Linker propensity from small dataset
Average relative probability of helix
Normalized frequency of reverse turn with weights
Normalized positional residue frequency at helix termini
C""'
Relative frequency in reverse-turn
Normalized frequency of beta-turn
Bitterness
TOTFT index
TOTLS index
Normalized positional residue frequency at helix termini
Cc
Relative preference value at C3
Retention coefficient in HFBA
null
Normalized frequency of beta-sheet unweighted
Normalized frequency of zeta R
Surface composition of amino acids in extracellular
proteins of mesophiles
the Chou-Fasman parameter of
beta-sheet
182
183
184
0.101
0.101
0.101
P2'
P2'
P2'
185
0.1
P2'
186
187
188
189
190
191
192
193
194
195
196
197
198
199
0.1
0.1
0.1
0.1
0.099
0.099
0.099
0.099
0.097
0.097
0.097
0.097
0.097
0.096
P2'
P2'
P2'
P2'
P1
P1
P2'
P2'
P1
P1
P2'
P1
P1
P2'
200
0.096
P2'
201
202
203
204
205
206
207
208
209
210
211
212
213
0.095
0.095
0.095
0.095
0.094
0.094
0.093
0.093
0.092
0.092
0.092
0.092
0.092
P1
P2'
P2'
P2
P2'
P1
P1
P2'
P1
P1
P2'
P2'
P2'
214
0.091
P2'
215
0.091
P2'
216
0.091
P1
217
218
219
220
0.091
0.091
0.09
0.09
P1
P1'
P2'
P1
Information measure for coil
Helix-coil equilibrium constant
Normalized frequency of coil
Knowledge-based membrane-propensity scale from 3D_Helix
in MPtopo databases
the Chou-Fasman parameter of
beta-sheet
Transfer free energy to lipophilic phase
Retention coefficient in TFA
Volume
Normalized frequency of N-terminal helix
Hydrophobicity
Hydrophobicity index
Heat capacity
Normalized frequency of beta-sheet
Modified Kyte-Doolittle hydrophobicity scale
Hydropathy index
Normalized frequency of beta-sheet in alpha+beta class
Linker propensity from 1-linker dataset
The number of atoms in the side chain labelled 2+1
Relative preference value at N1
Hydropathy scale based on self-information values in the
two-state model
PRIFT index
Free energy change of alpha
Refractivity
Energy transfer from out to in
Relative preference value at N2
Average side chain orientation angle
Interactivity scale obtained from the contact matrix
Alpha-helix indices
ALTFT index
Average relative fractional occurrence in AL
Residue volume
Residue volume
Side chain volume
Normalized positional residue frequency at helix termini
N5
Scaled side chain hydrophobicity values
Interactivity scale obtained by maximizing the mean of
correlation
the Chou-Fasman parameter of beta-sheet
Mean polarity
Hydrophobicity
Hydrophilicity scale
Melting point
221
222
223
224
225
226
0.09
0.09
0.089
0.088
0.088
0.087
P2'
P2'
P1'
P2'
P1
P1
227
0.086
P1
228
229
230
231
232
233
234
235
0.086
0.086
0.085
0.085
0.085
0.085
0.085
0.085
P1
P1
P2'
P2'
P2
P1
P2'
P1
236
0.085
P2'
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
0.085
0.084
0.084
0.084
0.084
0.084
0.084
0.083
0.083
0.083
0.083
0.083
0.083
0.083
0.083
0.083
0.083
P1
P1
P1
P1
P2'
P2'
P2'
P2
P1
P2'
P2
P2
P2'
P2'
P2'
P1
P1
254
0.083
P1
255
256
0.082
0.082
P1
P1
257
0.082
P1
258
259
260
0.082
0.082
0.082
P1
P1
P1
Composition of amino acids in nuclear proteins
Principal component I
Transfer free energy
Weights for coil at the window position of -3
Relative population of conformational state C
Optimized relative partition energies - method D
Hydropathy scale based on self-information values in the
two-state model
Accessibility reduction ratio
Helix termination parameter at posision j-2j-1j
alpha-CH chemical shifts
alpha-CH chemical shifts
Information measure for loop
Relative preference value at C2
Average relative probability of beta-sheet
Optimized relative partition energies - method C
Hydrophobicity coefficient in RP-HPLC the Chou-Fasman
parameter of beta-sheet
Helix-coil equilibrium constant
Hydrophilicity value
Hydrophobic parameter
Surrounding hydrophobicity in alpha-helix
Relative preference value at N5
Normalized frequency of chain reversal
Normalized frequency of beta-turn
Average relative probability of inner beta-sheet
Relative preference value at N2
Normalized flexibility parameters
AParent partition energies calculated from Chothia index
Proportion of residues 95% buried
Normalized frequency of beta-turn
Normalized frequency of the 2nd and 3rd residues in turn
Size
Optimized relative partition energies - method B
Direction of hydrophobic moment
Information value for accessibility; average fraction
35%
AA composition of mt-proteins
AA composition of mt-proteins from animal
Hydropathy scale based on self-information values in the
two-state model
Spin-spin coupling constants 3JHalpha-NH
Normalized frequency of beta-sheet in alpha+beta class
Normalized frequency of chain reversal R
261
262
263
264
265
266
267
268
269
0.081
0.081
0.081
0.081
0.081
0.081
0.081
0.08
0.08
P2
P2'
P1
P2'
P1'
P1
P1
P2'
P1
270
0.08
P1
271
0.08
P1
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
0.08
0.08
0.079
0.079
0.079
0.079
0.079
0.079
0.079
0.079
0.078
0.078
0.078
0.078
0.077
0.077
0.077
0.076
0.076
0.076
0.076
0.076
0.076
0.076
0.076
0.076
0.075
0.075
0.075
0.075
P1
P2'
P1
P1
P1
P1
P1
P2'
P1
P2'
P2'
P1
P1
P1
P1'
P2'
P1
P1'
P1'
P2'
P2'
P2'
P2'
P1
P2
P1
P1'
P2
P1'
P2
Information measure for turn
Average relative fractional occurrence in A0
Hydrophobic parameter pi
Hydration number
Beta-sheet propensity derived from designed sequences
Hydrophobicity index 3 pH
RF value in high salt chromatography
Short and medium range non-bonded energy per atom
AA composition of CYT of single-spanning proteins
Interactivity scale obtained by maximizing the mean of
correlation
the Chou-Fasman parameter of beta-sheet
p-Values of mesophilic proteins based on the
distributions of B values the Chou-Fasman parameter of
beta-sheet
Proportion of residues 100% buried
Information measure for middle turn
Buriability
Signal sequence helical potential
Polarity
Residue accessible surface area in folded protein
Weights for alpha-helix at the window position of -3
Beta-strand indices for beta-proteins
Mean area buried on transfer
NNEIG index
Normalized frequency of C-terminal non helical region
Bulkiness
Weights for beta-sheet at the window position of 3
Relative preference value at C'
Retention coefficient in HPLC pH2.1
Polarizability parameter
Weights for alpha-helix at the window position of 4
Hydrophobicity index
Hydrophobicity
Conformational parameter of beta-turn
Linker propensity index
Accessible surface area
The number of bonds in the longest chain
Normalized composition of membrane proteins
Consensus normalized hydrophobicity scale
Relative preference value at C1
Weights for alpha-helix at the window position of -4
Average relative probability of beta-sheet
pK-N
Hydrostatic pressure asymmetry index PAI
302
303
304
305
306
307
308
309
310
311
312
0.075
0.075
0.075
0.074
0.074
0.074
0.074
0.074
0.074
0.074
0.074
P2'
P2'
P2'
P2'
P2'
P2'
P2
P2'
P2'
P2
P1
313
0.074
P1
314
315
316
317
318
319
320
321
0.074
0.074
0.074
0.073
0.073
0.073
0.073
0.072
P2'
P2'
P1
P2'
P1
P1'
P2'
P2
322
0.072
P1
323
324
325
326
0.072
0.072
0.072
0.071
P2'
P1
P1'
P1
327
0.071
P2
328
329
330
331
332
333
334
0.071
0.071
0.071
0.071
0.071
0.071
0.07
P2'
P2
P1
P2'
P2'
P2'
P2'
335
0.07
P1
336
337
338
339
0.07
0.07
0.07
0.07
P2
P2'
P1'
P2
AParent partial specific volume
Principal property value z3
Normalized composition from animal
Normalized relative frequency of extended structure
Normalized composition of mt-proteins
Relative mutability
Transfer free energy from chx to oct
Relative preference value at N""
Relative preference value at N'
Beta-strand indices for alpha/beta-proteins
Mean fractional area loss
Entire chain compositino of amino acids in nuclear
proteins
Information measure for extended
Normalized frequency of extended structure
Normalized relative frequency of helix end
pK-N
Energy transfer from out to in
Transfer free energy CHP/water
Hydrophobicity scale from native protein structures
Conformational preference for parallel beta-strands
Normalized positional residue frequency at helix termini
C""
Average membrane preference: AMP07
Composition of amino acids in membrane proteins
Retention coefficient in NaH2PO4
van der Waals parameter epsilon
Interior composition of amino acids in intracellular
proteins of thermophiles
the Chou-Fasman parameter
of beta-sheet
Long range non-bonded energy per atom
Volume
Average non-bonded energy per residue
pK-C
Hydrostatic pressure asymmetry index PAI
Normalized relative frequency of bend
Normalized frequency of turn in alpha/beta class
Free energies of transfer of AcWl-X-LL peptides from
bilayer interface to the Chou-Fasman parameter of
beta-sheet
Smoothed upsilon steric parameter
Optimized beta-structure-coil equilibrium constant
RF rank
Residue accessible surface area in folded protein
340
341
342
343
344
345
346
347
348
349
0.07
0.07
0.07
0.069
0.069
0.069
0.069
0.069
0.069
0.069
P2'
P2'
P1
P2'
P2'
P2'
P2
P1
P2'
P2'
350
0.069
P2'
351
352
0.069
0.069
P2'
P2'
353
0.069
P2'
354
355
356
357
358
359
360
361
362
363
0.069
0.069
0.069
0.069
0.069
0.069
0.069
0.068
0.068
0.068
P2'
P1
P2'
P2'
P2'
P2
P2'
P2'
P1
P1'
364
0.068
P1'
365
366
367
368
0.068
0.068
0.068
0.068
P1'
P1'
P2'
P2
369
0.067
P2
370
371
372
373
374
375
0.067
0.067
0.067
0.067
0.067
0.067
P2'
P2
P2'
P2
P1'
P1'
376
0.067
P1
377
0.067
P2'
Distance between C-alpha and centroid of side chain
Amino acid composition
Value of theta
Weights for beta-sheet at the window position of 0
Frequency of the 1st residue in turn
Normalized frequency of zeta R
Normalized frequency of beta-sheet in alpha/beta class
Hydrophilicity scale
Average volume of buried residue
Average volumes of residues
Volumes not including the crystallographic waters using
the ProtOr
Mean volumes of residues buried in protein interiors
Residue accessible surface area in tripeptide
Volumes including the crystallographic waters using the
ProtOr
Average relative probability of inner helix
Helix-coil equilibrium constant
ALTLS index
Weights for coil at the window position of 0
Normalized frequency of alpha-helix in all-alpha class
Partial specific volume
Aperiodic indices
Information measure for N-terminal turn
AA composition of mt-proteins from fungi and plant
Hydrophobicity factor
Normalized positional residue frequency at helix termini
Nc
Frequency of the 1st residue in turn
Normalized frequency of zeta R
Linker propensity from 2-linker dataset
Average reduced distance for side chain
Interior composition of amino acids in intracellular
proteins of mesophiles
the Chou-Fasman parameter of
beta-sheet
Value of theta
Information measure for pleated-sheet
Hydrophobicity-related index
Weights for beta-sheet at the window position of -1
ALTFT index
Normalized frequency of beta-sheet from CF
Hydropathy scale based on self-information values in the
two-state model
The Chou-Fasman parameter of the coil conformation
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
0.067
0.067
0.067
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.066
0.065
0.065
0.065
0.065
0.065
0.065
0.064
0.064
0.064
0.064
0.063
0.063
0.063
0.063
0.063
0.063
0.063
0.063
0.063
0.062
0.062
0.062
0.062
0.062
0.061
0.061
0.061
0.061
0.061
P3
P2'
P2'
P2
P2
P2
P2
P2
P2
P2
P2
P2
P2
P1
P2
P2'
P1'
P1
P1
P2'
P2'
P2
P2
P2
P2'
P1
P2'
P1'
P2'
P2
P2
P2'
P2'
P2'
P2'
P1
P1'
P1'
P1
P2'
P1
P1
P2'
P1'
Normalized average hydrophobicity scales
Information measure for C-terminal helix
Relative preference value at C2
STERIMOL minimum width of the side chain
Transfer free energy from chx to wat
Residue accessible surface area in tripeptide
Residue volume
Side chain volume
Residue volume
Optimized beta-structure-coil equilibrium constant
Transmembrane regions of non-mt-proteins
Normalized frequency of beta-sheet
Normalized frequency of turn from CF
Composition of amino acids in nuclear proteins
AA composition of MEM of single-spanning proteins
Normalized frequency of chain reversal S
Normalized frequency of C-terminal beta-sheet
AParent partition energies calculated from Janin index
Ratio of buried and accessible molar fractions
AA composition of CYT of single-spanning proteins
Aperiodic indices for alpha-proteins
Frequency of the 4th residue in turn
Helix initiation parameter at posision i-1
Normalized frequency of chain reversal D
Normalized frequency of turn in all-beta class
Relative population of conformational state E
AA composition of EXT of single-spanning proteins
Partial specific volume
Partial specific volume
Information measure for middle turn
Partition energy
Retention coefficient in NaH2PO4
Radius of gyration of side chain
Sequence frequency
Side chain hydropathy corrected for solvation
14 A contact number
8 A contact number
Average gain in surrounding hydrophobicity
Weights for coil at the window position of 3
Normalized relative frequency of bend S
Linker propensity from small dataset
Normalized frequency of beta-sheet in all-beta class
Optimized propensity to form reverse turn
Normalized frequency of alpha-helix
422
0.061
P3
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
0.061
0.061
0.061
0.061
0.061
0.061
0.061
0.061
0.06
0.06
0.06
0.06
0.06
0.06
0.06
P2
P2
P2
P2
P2'
P2
P1
P2'
P2
P1
P2'
P2'
P2
P2'
P1'
438
0.06
P2'
439
440
441
0.06
0.06
0.06
P2
P2
P1'
442
0.06
P1
443
444
445
0.06
0.059
0.059
P2'
P2
P1
446
0.059
P3
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
0.059
0.059
0.059
0.059
0.059
0.059
0.058
0.058
0.058
0.058
0.058
0.058
0.057
0.057
0.057
P2'
P2
P1
P2
P1
P2'
P2'
P2'
P1
P1
P2
P2'
P1
P1
P1
Normalized hydrophobicity scales for
alpha/beta-proteins
Average reduced distance for C-alpha
AParent partition energies calculated from Janin index
Transfer free energy
Ratio of buried and accessible molar fractions
Frequency of the 3rd residue in turn
Conformational parameter of beta-turn
Average membrane preference: AMP07
Information measure for extended without H-bond
Normalized frequency of reverse turn unweighted
Relative preference value at C4
ALTFT index
Average number of surrounding residues
Normalized frequency of chain reversal
8 A contact number
Linker propensity from 2-linker dataset
Normalized positional residue frequency at helix termini
C2
Accessible surface area
The number of bonds in the longest chain
Weights for alpha-helix at the window position of 1
Normalized positional residue frequency at helix termini
Nc
Intercept in regression analysis
Helix termination parameter at posision j-2j-1j
Unfolding Gibbs energy in water pH7.0
Normalized positional residue frequency at helix termini
N3
Membrane preference for cytochrome b: MPH89
Weights for coil at the window position of 2
Normalized frequency of C-terminal beta-sheet
Size
Partition energy
Weights for beta-sheet at the window position of -2
Normalized frequency of C-terminal non beta region
STERIMOL length of the side chain
Average relative fractional occurrence in EL
Normalized frequency of alpha region
Normalized frequency of bata-structure
Normalized frequency of extended structure
Short and medium range non-bonded energy per residue
AParent partition energies calculated from Chothia index
Proportion of residues 95% buried
462
463
464
465
466
467
468
469
470
471
0.057
0.057
0.057
0.057
0.057
0.057
0.057
0.057
0.057
0.057
P1'
P2
P1
P2'
P1
P2
P1
P2'
P2'
P2'
472
0.057
P3
473
474
475
476
0.057
0.056
0.056
0.056
P1
P1
P2
P4
477
0.056
P1'
478
479
480
481
482
483
484
485
486
487
0.056
0.056
0.056
0.056
0.056
0.056
0.056
0.056
0.056
0.056
P2
P2
P2
P2'
P2
P2
P3
P1
P2'
P1'
488
0.056
P3
489
490
491
492
493
494
495
496
497
498
499
500
0.056
0.056
0.055
0.055
0.055
0.055
0.055
0.055
0.055
0.055
0.055
0.055
P2'
P1'
P2
P2'
P2
P2
P2
P2'
P1
P2
P1
P3
Normalized frequency of alpha-helix
Radius of gyration of side chain
Principal component III
Ratio of average and computed composition
Average reduced distance for C-alpha
Hydrophobicity index 3 pH
Flexibility parameter for one rigid neighbor
Weights for coil at the window position of -2
Absolute entropy
STERIMOL maximum width of the side chain
Normalized positional residue frequency at helix termini
N2
Flexibility parameter for no rigid neighbors
Frequency of the 2nd residue in turn
The number of atoms in the side chain labelled 1+1
pK-N
Surface composition of amino acids in extracellular
proteins of mesophiles
the Chou-Fasman parameter of
beta-sheet
Weights for coil at the window position of 0
Normalized relative frequency of bend
Weights for coil at the window position of -1
A parameter of charge transfer donor capability
Normalized frequency of turn from LG
Modified Kyte-Doolittle hydrophobicity scale
Principal component I
Normalized frequency of chain reversal D
Relative preference value at N-cap
Relative preference value at N-cap
Hydropathy scale based on self-information values in the
two-state model
Transfer free energy from vap to chx
AParent partial specific volume
Short and medium range non-bonded energy per atom
Optimized transfer energy parameter
Normalized frequency of beta-sheet with weights
Relative frequency in beta-sheet
Hydropathy index
Aperiodic indices for beta-proteins
Fraction of site occupied by water
AA composition of MEM of multi-spanning proteins
Linker propensity index
Retention coefficient in HPLC pH2.1