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Advanced methods of
molecular dynamics
1. Monte Carlo methods
2. Free energy calculations
3. Ab initio molecular dynamics
4. Quantum molecular dynamics
5. Trajectory analysis
When classical mechanics is not adequate?
A “quantum measure“ of an object with mass m
And kinetic energy E is its de Broglie wave length:
 = 2ћ/p = 2ћ/(2mE)1/2
Shall d be the characteristic dimension of the
system, then:
 << d
classical mechanics,
d
quantum mechanics.
 of selected objects
“classic”
1. A student running
late for class:
 ~ 10-36 m
m = 70 kg, v = 5 m/s
e- quantum
2. Valence electron:
m = 9x10 -31kg, E = 1 eV
Ne
 ~ 10-9 m
semi-quantum
m = 2x10 -26kg, E = 0.01 eV  ~ 10-10 m
3. Vibrating neon atom:
Particle – wave dualism
Wave character of quantum objects:
double slit experiment - difraction
R. Kosloff et al., HU Jerusalem
Even classical objects can
exhibit wave behavior 
R. Kosloff et al., HU Jerusalem
Quantum motions of atoms and molecules
1. Zero point vibrations –
energy cannot decrease below h/2
2. Tunneling – under a barrier between two wells
(also above the barrier reflection)
3. Energy transfer via quantum resonances,
interferences
Quantum interactions
1. With electrons: Non-adiabatic interactions –
avoided crossings, conical intersections,…
2. With photons: electronic/vibrational/rotational
photoexcitations - spectroscopy, control of
reactions by optical pulses, …
Quantum vs classical mechanics
Comparison between a quantum and classical ball
elastic vibrations (elasticaly bouncing from the floor)
M. Reed, Yale University
Time-dependent vs time-independent
Classical mechanics: time-dependent (dynamical
Newton equations)
Quantum mechanics:
time-independent: H=E  time-dependent: ih/t =H
Dynamical evolution, nonStationary bound and
Scattering states  j, E j; Stationary response (t); also
time-indep. Hamiltonian for a time-dep. Hamiltonian
For time-indep. Hamiltonian (in principle) equivalent:
(t) =  j j exp[(-i/h)Ejt]
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