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Seeds Lab 13G Parts of a Seed In plant physiology, the epicotyl is the embryonic shoot above the cotyledons. Parts of a Seed In dicots, the hypocotyl is what appears to be the base stem under the spent withered cotyledons, and the shoot just above that is the epicotyl. Parts of a Seed In monocot plants, the first shoot that emerges from the ground or from the seed is the epicotyl, from which the first shoots and leaves emerge.