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MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 6 Table of Contents Open Access Table of Contents http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 6 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 7 Table of Contents Authors Open Access Page Abstract Titles Seyed Shahriar Arab, Niloofar Shirvanizadeh, Maryam Khoshnejat A collection of bioinformatics tools to protein engineering 32 Zahra Asadi Interaction of metal Schiff base complexes with bovine and human serum albumin 33 Engineering of anti-angiogenic peptides for cancer therapy: structure-function and therapeutic evaluations 34 Seyed Mohsen Asghari Farangis Ataei, Masoud Torkzadeh-Mahani, Saman Hosseinkhani Firefly luciferase complementation assay for IP3 detection Saeed Balalaie Synthesis of novel peptides and investigation of their biological activities Mohammad Reza Dayer, Mohammad Saaid Dayer, Seyedeh Elham Rezatofighi Abdollah Derakhshandeh Seyed-Masoud Etezad, Kamaladin Gharanjig, Bahareh Dabirmanesh, Khosro Khajeh Hossein Ghafoori, Mohammad Reza Naghavi, Abolhassan Shahzadeh Fazeli Ghasem Ghalamfarsa, Mahmoud Mahmoudi, Seyyed Vahid Hosseini, Abbas Ghaderi, Zahra Mojtahedi Nematollah Gheibi, Marzieh Kafshdouzi Amin, Hamze Rahimi, Morteza Karimipoor 35 Preferential packaging of negative sense RNA by viral nucleoproteins 36 37 Immunogenicity of recombinant ISS protein as potential vaccine against colibacillosis in poultry 38 A novel intermediary amylase capable of completely hydrolyzing starch, pullulan and cyclodextrin 39 Investigation of Artemisia genus effects on iNOS and COX-2 expression using RAW 264.7 macrophage cells 40 Differential immune reactivity pattern of SW48 and SW1116 colorectal cancer cell lines with colorectal cancer patients sera 41 In silico and in vitro analysis of structure based designed peptides on TrkB receptor of Ov-car-3 and Sk-ov-3 cell lines 42 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 7 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 8 Table of Contents Open Access Hedayatollah Ghourchian Performance of three nanoparticle based immuno-sensors for detection of hepatitis B surface antigen 43 Mehran Habibi-Rezaei How do proteins involve in promotion of type 2 to 3 diabetes? Aliasghar Hamidi, Mohammad Reza Rashidi, Siavoush Dastmalchi Molecular docking studies of quercetin as a xanthine oxidase inhibitor 45 Parichehr Zamani, Reza Hasan Sajedi, Saman Hosseinkhani, Mehdi Zeinoddini Design and construction of a cell based biosensor for rapid identification of Vibrio cholerae using CANARY technology 46 44 Faezeh Hashemi, Mohammad Reza Dayer, Mohammad Saeid Dayer, Azizolla Beheshti Molecular dynamics simulations of Mn (II) coordination in the absence of Ca (II) in human calprotectin binding sites Bahram Hemmateenejad, Thomas R. Weikl Effect of conformational free energy differences on binding and drug resistance of the HIV-1 protease Emran Heshmati, Elahe Astani How well can DFT-D methods predict protein geometries and energetics? 49 Saman Hosseinkhani Flexibility switch of firefly luciferase 50 Roya Pournejati, Hamid Reza Karbalaei-Heidari Protein tailoring as a tool for extracellular expression of an archeal lipase in E. Coli and its secretion optimization by response surface methodology 51 Peroxidase activity of ‘‘heme-ferritin” complex: a possible mechanism of pathogenesis in neurodegenerative diseases 52 Morteza Jaafari, Reza Khodarahmi, Samira Ranjbar, Mohammad Reza Ashrafi, Seyyed Mohsen Asghari 47 48 Parvaneh Maghami, Masoumeh Valipour, Najmeh Poursasan, Ali Akbar Moosavi- Movahedi Formation of heme degradation products during the interaction of human hemoglobin with methyl tertiary-butyl ether (MTBE) Raheleh Masoudi Tau, amyloid-β and neurotrophin dysregulation in alzheimer's disease 54 Recent discovery of α-glucosidase inhibitors with pyrimidine scaffold 55 Mohammad Hossein Mehraban, Zeinab Moafiyan, Farhad Panahi, Ali KhalafiNezhad, Reza Yousefi http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 8 53 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 9 Table of Contents Open Access Mehran Miroliaei Lemon balm (Melissa Officinalis, L.) extract prevents formation of haemoglobin A1c 56 Ali Akbar MoosaviMovahedi Oxidative stress stimulates protein glycation 57 Recombinant expression of light chain of Botulinum neurotoxin type-A in E. coli and evaluation of its enzymatic activity 58 Seyed Jafar Mousavy, Jamal Rashidiani, Alireza Farasat, Firouz Ebrahimi Amir Niasari-Naslaji, Fahimeh Sadat Seyyed Asgari Ali Niazi Maryam Nikkhah, Azarakhsh Abbasabadi Oladzad, Asyeh Javanian, Mohammad Salehi Aliabad Olia Ahmad Oryan, Soodeh Alidadi, Ali Moshiri Worldwide research on camel proteins 59 Hairy roots efficient tool for the production of recombinant proteins 60 Disruption of mitochondrial membrane integrity induced by amyloid aggregates arising from variants of SOD1 61 62 Genipin; a natural cross-linking agent for tissue engineering Farhad Panahi, Reza Yousefi, Ali KhalafiNezhad Pyrimidine-fused heterocycle derivatives as potent and selective antidiabetic α-glucosidase inhibitors Hassan Ramshini Chemical analogs design of curcumin as effective inhibitors related to lysozyme amyloid fibrillation 64 Fatemeh Ghaemieh, Gholam Hossein Riazi, Mohsen Amini The effects of γ-aminobutyric acid (GABA( and its derivatives on microtubule polymerization in rat brain 65 Mona Zamanian-Azodi, Mostafa Rezaei -Tavirani, Hadi Hasanzadeh, Sara Rahmati Rad, Sona Dalilan, Samira Gilanchi, Haleh Manzour Introducing biomarker panel in esophageal, gastric, and colon cancers; a proteomic approach Mehdi Sadat-Shojai Ehsan Rezaie , Ali Miri, Gholamreza Olad, Mojtaba Saadati, Jafar Salimian In vitro cell response to a new protein nanocomposite Antigen nature effect on immunological memory http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 9 63 66 67 68 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 10 Table of Contents Maryam Shahhoseini, Raha Favaedi, Soodeh Mahdian Azar Shahpiri, Mohsen Zarei, Rezvan Mohammadi Nezhad, Iman Soleimanifard, Soheil Piezadeh Open Access Evidences for a dynamic role of the histone 2A variant H2A.Z in regulation of cell proliferation/differentiation switch Heterologous expression and metal-binding characterization of four different rice metallothionein isofroms 69 70 Maryam Tabarzad, Bahram Kazemi, Hossein Vahidi, Reza Aboofazeli, Soraya Shahhosseini, Nastran Nafissi-Varcheh Design of oligonucleotide ligands with affinity for coagulation factor VIII 71 Majid Tafrihi E-cadherin protein an appropriate marker for epithelial cancer cells and a good candidate for cancer treatment 72 Asghar Taheri-Kafrani, Asieh Soozanipour Enhancement of stability and catalytic activity of immobilized xylanase on modified magnetite nanoparticles 73 Reza Yousefi, Sima Khazaei, Maryam Ghahramani, Zohreh Tavaf The impact of homocyteinylation and peroxynitrytation on structure, function and aggregation of lens crystallins; implications for their possible contribution in the pathogenesis of cataract disorders 74 Saeed Yousefinejad, Mojtaba Bagheri, Ali Akbar MoosaviMovahedi Toward a strategy to describe and predict activities of peptide drugs contain L/D and unnatural residues: QSAM of antimicrobial hexapeptides 75 Molecular dynamics simulations studies of substrate and inhibitor interactions with monoamine oxidase-B active site 76 The mechanism of antioxidant defense of glutathione peroxidase and superoxide dismutase induced by nano selenium 77 Mitra Aarabi, Asghar Taheri-Kafrani, Asghar Zeini-Esfahani Interaction of prednisolone with β-lactoglobulin: UV-Vis study 78 Saeed Emadi, Zahra Abbaskhani Kinetics of metal ions-induced aggregation of lysozyme studied by fluorescence spectroscopy and circular dichroism 79 Zahra Aghelan, Seyed Ziyae Aldin Samsam Shariat Purification and biochemical characterization of peroxidase from Rosmarinus officinalis leaves Amin Reza Zolghadr Samaneh Zolghadri, Maryam Rezaei http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 10 80 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 11 Table of Contents Open Access Ehsan Ahmadi, Iraj Saadat, MohammadHossein Karimi Association between genetic polymorphisms of NQO1 C609T and CAT C-262T with risk of liver acute rejection 81 Homa AhmadiRoozbahani, Asghar Taheri-Kafrani, Hasan Mohabatkar A combined spectroscopic and molecular docking study on the interaction of dopamine with apo-human serotransferrin as a new drug carrier 82 Mohsen Akbarian, Mohammad Pazhang, Nader Chaparzadeh, Fereshte Sadat Younesi Determination of AaCel9A endoglucanase stability at different temperatures and in the presence of calcium and cobalt ions Mohammad Akbarzadeh, Zeinab MoosaviMovahedi, Abbas Shockravi, Ali Akbar Moosavi-Movahedi Design of Fe (III) and L-Cys mixed micelle system as an artificial catalase at pH 3.0 Negin Alavi, Mohammad Reza Saberi, Jamshidkhan Chamani The evaluation of structural stability of KLF4 protein of stem cells by using three-dimensional fluorescence spectroscopy Joulia Alizadeh-Rahrovi, Azadeh Ebrahim-Habibi 83 84 Molecular dynamics simulation study on the initial stages of amyloid formation in myoglobin and search for anti-amyloid compounds 85 86 Reyhaneh Farrokhi Yekta, Nasrin Amiri Dashatan Advances in proteomics analytical techniques Abolghasem Hedayatkhah, Mostafa Amopour Bahnamiry An investigation of inhibition potential and mechanism of some ligands on diheme cytochrome C of Shewanella Baltica Zahra Ansaripour, Azar Shahpiri, Mohammad Ali Asadollahi Enhancement of resistance of Saccharomyces cerevisiae to cadmium by heterologous expression of rice metallothionein type (osmti-1b) Maryam Arab Khalaj, Hassan Tavakoli, Mostafa Najafi Optimization method of tyrosinase assay with using dihydroxyphenylalanine (L-DOPA) as enzyme substrates 90 Asieh Aramvash, Mansooreh Seyed Karimi The effect of sodium chloride on RADA16-I four chains secondary structure: molecular dynamics study 91 Ameneh Arjmandi, Lila Hassani Relation between G-quadruplex structure and catalytic activity in peroxidase DNAzymes 92 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 11 87 88 89 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 12 Table of Contents Open Access Habib Asadi, Hamid HadiAlijanvand Prediction of thermophilic proteins based on features of amino acid sequence Mina Asadifar, Hashem Yaghoubi, Somayyeh Rostamzadeh Mansour Immobilization of Paclitaxel drug on modified magnetite nanoparticles coated with poly (Ethylene glycol) for targeted drug delivery Mohammad Reza AshrafiKooshk, Mahdi Sanjari, Morteza Jaafari, Sirous Ghobadi, Reza Khodarahmi Effects of heparin and hyaluronic acid on native and chemically modified lysozyme amyloid fibril formation 95 Mohammad Reza AshrafiKooshk, Farangis Ebrahimi, Samira Ranjbar, Sirous Ghobadi, Reza Khodarahmi Comparative studies on drug binding to the purified and pharmaceutical-grade human serum albumin 96 Mansoureh Askari, Zahra Asadi, Mozaffar Asadi Synthesis, characterization and thermodynamic studies of interaction between new water-soluble metal Schiff base complexes and DNA Elahe Astani, Emran Heshmati, Nasser L. Hadipour Calculations of non-covalent interactions in the active site of hydroxysteroid sulfotransferase enzyme using DFT method Nooshin Azari, Mohammad Reza Dayer, Nematollah Razmi, Mohammad Saaid Dayer 93 94 97 98 Comparison of prion protein instability in different force fields of molecular dynamics simulations 99 Comprehensive kinetic and structural studies shed a new light on the mechanisms of inhibition by which flavonoid derivatives inhibit tyrosinase activity 100 Azam Azimi, Seyed Mahmood Ghaffari, Gholam Hossein Riazi The effect of the Cyperus rotundus terpen, alpha cyperone, on the polymerization of microtubules, in vitro 101 Maryam Azimi, Nastaran Nafissi-Varcheh, Reza Aboofazeli, Mohammad Ali Faramarzi Laccase activity, stability and kinetic parameters in aqueous surfactant solutions 102 Maryam Azimi, Nastaran Nafissi-Varcheh, Reza Aboofazeli, Mohammad Ali Faramarzi Biocatalysis in water-in-oil microemulsion systems 103 Maryam Azarian, Nematollah Gheibi, Somayeh Hosseini Zavareh http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 12 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 13 Table of Contents Open Access Mansour Azizi, Kheyrollah Mehrani Immobilization of albumin on modified magnetite nanoparticles and characterization Marzieh Azizi, Hedayatollah Ghourchian, Fatemeh Yazdian, Fariba Dashtestani Effect of silver-albumin nanoparticles on breast cancer apoptosis 105 Abolfazl Barzegar, Sara Azizi Bioinformatic analysis of different antimicrobial peptides 106 Golnaz Bahramali, Bahram Goliaei, Zarrin Minuchehr, Majid Reza Ghatee Determination and analysis of chameleon protein sequences in the protein data bank 107 104 Abolfazl Barzegar Step-wise H atom donation capability of polyphenolic myricetin to scavenge ROS: quantum based DFT method studies 108 Abolfazl Barzegar Quantitative structure–activity relationships in drug discovery: Pyridinone scaffolds as anti-HIV drugs 109 Zohreh Bayat, Dariush Minai-Tehrani The effect of environmental factors on the binding of muscarinic antagonist to lipase of Pseudomonas aeruginosa 110 Fatemeh Behzadi, Firouzeh Gholampour, Seyed Mohammad Owji The effects of hydroalcohol extract of zingiber officinale on the hepatic damages resulting from ferrous sulfate in male rats 111 Yasamin Beinabadi, Abdolhamid NamakiShoushtari, Arastoo Badouei-Dalfard Isolation and characterization of an alkaline protease producing Pseudomonas aeruginosa sp.byk 28 from kerman’s dairy industry sewage 112 Tahere Bidmeshki, Alimohammad Ahadi, Hoda Ayat Structural analysis and binding modes of benzodiazepines with modeled GABAA receptor subunit alpha-1 113 Seddigheh Borhani Kodehi, Fatemeh Khodabandeh, Farshid Mohammad-Rafiee The effect of DNA sequence on ACF remodeler mechanism 114 Reyhane Chamani, Seyed Mohsen Asghari, Ali Mohammad Alizadeh, Majid Taghdir The effect of charge repulsion on the structure and function of an anticancer peptide derived from endostatin 115 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 13 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 14 Table of Contents Open Access Bahareh Dabirmanesh, Khosro Khajeh, Farideh Ghazi, Bijan Ranjbar, Seyed-Masoud Etezad Development of a thermostable and ionic liquid resistant laccase by saturation mutagenesis 116 Nasim Danaee, Jamshidkhan Chamani, Ali Neamati The fluorescence study on the interaction between βlactoglobulin and resveratrol in the presence of electromagnetic field 117 Sara Daneshjou, Khosro Khajeh, Bahareh Dabirmanesh, Fereshteh Rahimi Activity and stability analysis of immobilized Chondroitinase on porous silicon nanoparticles 118 Elahe Dashtban Moghadam, Neda Akbari, Khosro Khajeh Influence of histidine-histidine interaction on activity, stability and structure of uricase Fariba Dashtestani, Hedayatollah Ghourchian, Marzieh Azizi Albumin nanoparticles containing copper complex as SOD mimetic enzyme 120 Samira Davoodmanesh, Shahrzad Hadichegeni, Bahram Goliaei , Mohammad Taghizadeh, Mehrdad Hashemi, Fereshteh Taghavi Interaction of human serum albumin and fenvalerate; experimental and computational studies of albumin-fenvalerate interaction 121 Fatemeh Sadat Dehghani, Zahra Asadi Synthesis of novel water-soluble metal Schiff base complexes, spectrophotometric and thermodynamic studies of the interaction of these complexes with DNA 122 Fariba Dehghanian, Maryam Kay A computational investigation on the molecular interaction of AzrC and FMN 123 Shirin Ebrahimi, Mehdi Imani In silico study of disulfide bond in mammalian amylases 124 Codon optimization and cytoplasmic expression of human epidermal growth factor (hegf) in SHuffle T7 E. Coli strain 125 Zeinab EbrahimiHaratemeh, Masoud Torkzadeh-Mahani, Ali Riahi Medvar, Mojtaba Mortazavi, Hadi Nematollahi, Nasrin Parvaresh http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 14 119 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 15 Table of Contents Mahya Ebrahiminasab, Hani Hoseinifar, Anahita Mohseni Meybodi, Mehdi Totonchi, Marjan Sabbaghian Open Access Lack of the DPY19L2 gene in patients with globozoospermia 126 Mahshad Eftekhari, Hamid Reza Kobravi, Jamshidkhan Chamani Study on the resonance light scattering spectrum of cytochrome C in the presence of electromagnetic field 127 Nematollah Gheibi, Sayid Emami Thermodynamic stability study of native and modified mushroom tyrosinase Paniz Esfandfar, Mojtaba Falahati, Ali Akbar Saboury Lysozyme fibrillation inhibition by fisetin and diadzin small molecules 129 In silico inhibitory activity against aldose reductase by telmisarta 130 Habib Eslami, Hamzeh Rahimi, Maryam Rahati 128 Fereshteh Faghih, Samaneh Zolghadri Effect of copper oxide nanoparticles on liver enzymes activity in broilers 131 Zahra Fanaei, Rahman Emamzadeh, Mahboobeh Nazari Predicting the effect of a single amino acid substitution on Renilla luciferase stability 132 Zahra Fanaei, Rahman Emamzadeh, Mahboobeh Nazari Isoleucine 163 may have a dual role both in activity and stability of Renilla-luciferin 2-monooxygenase, a bioinfrmatic study 133 Nasrin Amiri Dashatan, Reyhaneh Farrokhi Yekta Pathway and network analysis in primary open angle glaucoma Yaser Fattahian, Ali RiahiMadvar, Masoud Torkzadeh-Mahani, Gholamreza Asadi-Karam Expression of neutral peroxidase from Lepidium draba in prokaryotic host Maryam Ferdousi, Mehran Habibi-Rezaei, Farzaneh Sabouni, Manizheh Sabokdast, Najmeh Poursasan, Sorour Ramezanpour, Saeed Balalai, Ali Akbar Moosavi-Movahedi Comparative view on the structure and cytotoxicity of the fibrils due to alzheimer’s disease and diabetes http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 15 134 135 136 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 16 Table of Contents Open Access Samira Foruzandeh, Neda Mirakhorli, Karim Mahnam, Behnaz Saffar Comparison of cadmium and zinc ion absorption by recombinant defensin 137 Maryam Ghahramani, Reza Yousefi Calcium indicates significant destabilizing effect on peroxynitrite-modified lens crystallins 138 Fatemeh Ghamari Effect of camel casein peptides on secondary structure of glycated human serum albumin 139 Inhibition of lysozyme amyloid fibril-induced reduction of brain hexokinase activity by resveratrol 140 Sajjad Shariatizi, Ali Akbar Meratan, Atiyeh Ghasemi, Dina Morshedi, Ali Akbar Saboury, Mohsen Nemat-Gorgani Inhibition of lysozyme fibrillogenesis and cytotoxicity by resveratrol 141 Fatemeh Ghasemi, Hamid Hadi Alijanvand Prediction of antimicrobial peptides using sequence information 142 Aysan Ghasemnezhad, Iraj Saadat Association between genetic polymorphisms of GPX1 pro198lue and CAT A-21T with risk of gastric cancer 143 Maryam Ghasempoor, Samaneh Zolghadri The effect of copper oxide nanoparticles as feed additive on some the blood proteins of broiler chickens 144 Fatemeh Ghazbanzadeh., Farangis Ataei, Maryam Nikkhah, Saman Hosseinkhani Optimization of recombinant glutamate dehydrogenase expression in various strains of Escherichia coli 145 Zeinab Ghesmati, Sarah Mohammadinejad An investigation on the mechanism of selective transport through the NPC using molecular dynamics simulation Saeedeh Ghiasvand, Fatemeh Rahbarizadeh, Majid Sadeghizadeh Novel targeting peptides for prostate cancer cells obtained by the screening of a phage display peptide library 147 Firouzeh Gholampour, Nadimeh Saki, Fatemeh Behzadi Ghiasabadi, Samaneh Keikha Protective effect of quercetin on ferrous sulfate –induced acute renal failure in rat 148 Shaqayeq Roqanian, Ali Akbar Meratan, Shahin Ahmadian, Mahshid Shafiezadeh, Atiyeh Ghasemi, Ali Akbar Saboury http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 16 146 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 17 Table of Contents Minoo Gholamzadeh, Hasan Mohabatkar, Giti Emtiazi Open Access Computational mutations for thermostabilizing α -amylase of Bacillus amyloliquefaciens 149 Minoo Gholamzadeh , Giti Emtiazi, Hasan Mohabatkar Alpha-amylase production by some starch assimilating Bacillus species 150 Elnaz Giahi, Hashem Yaghoubi, Mohammad Taghi Ahady, Asadollah Asadi Studying the relationship between the prevalence of hepatitis B in patients with glucose-6-phosphate dehydrogenase deficiency Reza Golabgir Zadeh, Mohammad Reza Dayer Simulation of HIV-I integrase interaction with its inhibitors, using molecular dynamic methods 152 Azam Goudarzi, Seyed Hamid Zarkesh-Esfahani, Rahman Emamzadeh Growth hormone and its mutants: a bioinformatics analysis 153 Azam Goudarzi, Seyed Hamid Zarkesh-Esfahani, Rahman Emamzadeh Prediction of growth hormone and growth hormone antagonist binding energy to their receptor 154 Zahra Asadi, Elahe Haddadi DNA binding studies of biologically active nano water soluble Zinc (II) Schiff base complexes: effect of substitutional groups of ligand on the DNA-complex interaction 155 Interaction of diazinon toxin with HSA protein; experimental and computational studies 156 Forough Hakiminia, Khosrow Khalifeh, Reza Hasan Sajedi, Bijan Ranjbar Study of chemical and heat-induced denaturation of wild-type and mutant mnemiopsin 157 Roghaye Hamidi, Farangis Ataei, Maryam Nikkhah, Saman Hosseinkhani Optimization of cholesterol oxidase protein expression in E. coli 158 Somayyeh Haqparast, Mahdi Fasihi Ramandi An association study of apolipoprotein A5 concentration with serum triglyceride levels as a risk factor of metabolic syndrome and coronary artery disease in Iranian population 159 Shahrzad Hadichegeni, Samira Davoodmanesh, Bahram Goliaei, Mohammad Taghizadeh, Mehrdad Hashemi, Fereshteh Taghavi http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 17 151 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 18 Table of Contents Open Access Zahra Hasanpour, Hoda Ayat, Alimohammad Ahadi Prediction of anti-HER2 nanobody C7b antigenicity 160 Elaheh Hashemi, Samaneh Zolghadri Effects of different levels of copper oxide nanoparticles supplementation as a growth factor on the antibody response of broilers to Newcastle disease 161 Faezeh Hashemi, Mohammad Reza Dayer, Mohammad Saaid Dayer, Azizolla Beheshti A study on the effects of Ca (II) binding on the structure and stability of calprotectin using molecular dynamics simulation 162 Seyed Ali Hashemi, Abdol Amir Allameh, Bahram Daraeii, Mohammad Sajad Emami Alagha The supportive role of a Stem cell- derived protein (SCF) in recovery of a murine model from Acetaminophen nephrotoxicity 163 Solubilization and refolding of recombinant BoNT/E light chain as expressed in the form of inclusion body in E. coli 164 Mohammad Sadegh Hashemzadeh, Seyed Jafar Mousavy, Firouz Ebrahimi, Sara Pouranvari, Ashkan Haji Nour Mohammadi Arezo Hematian Chamani, Lila Hassani Investigating the effect of macromolecular crowding on aggregation intermediat of β-Lactoglobulin 165 Marjan Hematian Larki, Mohammad Reza Dayer, Mohammad Saaid Dayer Resistance mutations in HIV-1 integrase 166 Ebrahim Hosseini, Seyed Younes Hosseini, Majid Sadeghizadeh, Mohammad Reza Fattahi Preparation of expression plasmid containing RGD/Mda-7 sequence for improved tumor gene therapy 167 Seyed Mohammad Hashem Hosseini, Zahra Emam-Djomeh Nanocomplexes arising from protein-polysaccharide associative phase separation as a promising vehicle for bioactive compounds 168 Ida Izadifar, Hamid Reza Karbalaei-Heidari Screening, purification and partial characterization of a lipase from solvent-tolerant bacterium, Stenotrophomonas sp. Strain IE-93 169 Safoura Jabbari, Khosro Khajeh, Bahareh Dabirmanesh Investigation of dopaminergic drug detection by surface plasmon resonance (SPR) sensor using laccase enzyme 170 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 18 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 19 Table of Contents Open Access Raheleh Jahanbani, Mahmood Ghaffari, Kourosh Vahdati, Maryam Salami, Houri Sepehri , Ali Akbar Moosavi-Movahedi Antioxidative and anticancer peptides derived from Persian walnut proteins 171 Mahshad Jalili Firouzi, Gholam Hossein Riazi, Farzad Mokhtari, Nematollah Gheibi Study on unsaturated fatty acids as tau protein aggregation triggers In vitro 172 Mahdi Hashempour Sadeghian, Mahmoud Aminlari, Shima Jalili Comparative study of sorbitol dehyrogenase kinetics in liver tissue 173 Shima Jalili, Mahmoud Aminlari, Mahdi Hashempour Sadeghian Comparative study of Rhodanese kinetics in liver tissue 174 Nezam Jalilian, Morteza Gharaat, Reza Hasan Sajedi, Maryam Shanehsaz The changing of bioluminescent attributes of photoprotein in joining with nano- quantum dots (QD) 175 Sima Khazaei, Sajjad Javadi, Sogand SasanMoghadam, Reza Yousefi Decreasing chaperone activity and change in the native structure of α-crystallin upon homocysteinylation 176 Marziye Jazini, Sarah Mohammadi Nejad Investigating the interaction of antibacterial peptide, aurein 1.2, with the bacterial membrane using molecular dynamics simulation 177 Saeed Kakaei, Amir Kavand Synthesis and labelling of [111 In-Dtpao] Tyr3-octreotide via solid phase method 178 Zahra Kargarpour, Sadegh Hasannia, Reza Hasan Sajedi A noble real time PCR-based method for Thermus thermophillus DNA ligase activity assessment Maryam Kay, Fariba Dehghanian Theoretical chemistry and molecular dynamic analyses reveal the molecular interaction of Azrc Azoreductase and Azo dyes Najmeh Kazem-Farzandi, Asghar Taheri-Kafrani Role of lysine 69 on the binding and immunoreactivity properties of bovine β-lactoglobulin Faegheh Kazemi, Niloofar Niknam, Malihe Keramati, Nasir Mohajel, Farzin Roohvand, Mohammad Mehdi Aslani, Seyed Shahriar Arab Rational site selection for investigation of amino acids interaction by computational studies: streptokinase as a case study http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 19 179 180 181 182 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 20 Table of Contents Marjan Kazemi, Mahmoud-Reza Aghamaali, Seyed Mohsen Asghari Samaneh Keykha, Firouzeh Gholampour, Jafar Vatanparast, Malihatozaman Monsefi Open Access Purification of α-amylase from a strain of thermophilic anoxybacillus flavithermus 183 Berberine improves liver failure induced by ferrous sulfate in rat 184 Saeedeh Keyvani Ghamsari, Azra RabbaniChadegani Studies on the binding affinity of anticancer drug actinomycin D to core histones and H1 histone 185 Tahere Khaghani-Milani, Joulia Alizadeh-Rahrovi, Bahram Goliaei, Azadeh Ebrahim-Habibi Structural comparison of amylin between species: molecular dynamics simulation 186 Saleeme Khajepour, Adel Yarizade, Ali Niazi Small Peptides are Natural Antibiotics Sedigheh Khanjani Jelodar, Mohamadreza Bigdeli, Samaneh Zolghadri The Interaction between oleuropin and bovine serum albumin Mohsen Shahlaei, Behnoosh Rahimi, Mohammad Reza AshrafiKooshk, Komail Sadrjavadi, Reza Khodarahmi Shima Khodaverdian, Bahareh Dabirmanesh, Akbar Heydari, Khosro Khajeh 187 188 Probing of possible olanzapine binding site on human serum albumin: combination of spectroscopic methods and molecular dynamics simulation 189 Activity, stability and structure of bacterial laccase in deep eutectic solvents 190 Kazem Khoshaman, Maryam Ghahramani, Sajad Javadi, Reza Yousefi The role of disulfide bridge covalent cross-linking on the structure, chaperon activity and aggregation propensity of wildtype and R12C mutant αA-crystallins 191 Maryam Khoshnejat, Seyed Shahriar Arab Minimutate: minimization on mutated protein structure 192 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 20 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 21 Table of Contents Nika Khoshnevis, Shahla Rezaei, Amene SamaeiNouroozi, Mohammad Reza Khoshayand, Mohammad Ali Faramarzi Mahsa Khosravi, Seyed Mostafa Razavi, Saeed Nazifi, Ehsan Rakhshandehroo Mehdi Koushki, Nasrin Amiri Dashatan Open Access Production and characterization of a novel halophilic protease produced by the isolate Salicola sp Adenosine deaminase activity in cattle with theileriosis 193 194 Protein-protein interaction: computational prediction methods 195 Zahra Liyaghatdar, Rahman Emamzadeh, Mahboobeh Nazari Conserved proline causing a supportive interaction with the substrate cavity in Renilla luciferase, a bioinformatic study 196 Zahra Liyaghatdar, Rahman Emamzadeh, Mahboobeh Nazari New evidence shows link between evolutionary trend and the structural stability of a conserved isoleucine in the Renilla luciferase tunnel site, a bioinformatic study 197 Safa Lotfi, Azra RabbaniChadegani Interaction of anthracycline antibiotic daunomycin with HMGB1 as non-histone protein in solution 198 Nematollah Gheibi, Fereshteh Mahdizade Interaction of human serum albumin with linolenic acid: stability and structural analysis 199 Shirin Mahmoodi, Mohammad Reza Soudi, Seyedeh Zahra MoosaviNejad Enzymatic xanthan degradation by isolated bacteria from soil farms in Tehran suberb 200 Narges Malek Zadeh, Reza Hasan Sajedi, Bijan Ranjbar Investigation of structure, thermodynamics and oligomerization of geobacillus maltogenic amylase 201 Hossein Zarei Jaliani, Safar Farajnia, Amir Maleksabet Engineering and Stabilization of A. Variabilis phenylalanine ammonia lyase 202 Rahim Malekzadeh, Azar Shahpiri Independence of c-terminal Cys-rich region of a rice metallothionein type 1 isoform in metal binding Fariba Mashayekhi Mazar, Ahmad Molaei Rad, Zhila Jamshidinia, Mahdi Alijanianzadeh Immobilization of laccase enzyme on biocathode for use in enzymatic fuel cell http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 21 203 204 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 22 Table of Contents Open Access Fariba Mashayekhi Mazar, Ahmad Molaei Rad, Faezeh Jamei, Zhila Jamshidinia, Mahdi Alijanianzadeh Fabrication of enzymatic bioanode using MWCNT and Nafion polymer 205 Fariba Mashayekhi Mazar1, Ahmad Molaei Rad1, Mahdi Alijanianzadeh, Zhila Jamshidinia Glucose oxidase: a catalyst for enzymatic biofuel cell 206 Mansoureh Mazaheri, Ali Akbar Saboury, Ali Akbar Moosavi-Movahedi Effects of some toxins on fibrillation processes of proteins 207 Mohammad Hossein Mehraban, Zeinab Moafiyan,, Asghar TaheriKafrani, Farhad Panahi, Ali Khalafi-Nezhad, Reza Yousefi β-lactoglobulin; a new transport vehicle for anti-diabetic drugs 208 Seyedeh Maedeh Mirtabar Darzi, Hamid Reza Karbalaei-Heidari Partial purification and characterization of an extra cellular αamylase from Bacillus licheniformis BR1390 209 Mahta Mirzaei, Saeed Mirdamadi, Mohamad Reza Ehsani, Mahmoud Aminlari, Ebrahim Hoseini Consideration the antioxidant activity of yeast protein hydrolysate in Saccharomyces cerevisiae and Kluyveromyces marxianus 210 Ali Moghadam, Ali Niazi Production of recombinant protein MAP30 in Nicotiana tobacum hairy roots 211 Fatemeh Mohammadi, Hossein Rahmani, Reza Hasan Sajedi, Mohammad Ali Nairi Khalili, Khosro Khajeh A comparative study of purification procedure of His-tagged tau protein (1N4R) using Ni-NTA agarose and SP- sepharose chromatography Shima Mohammadi, Asghar Taheri-Kafrani Study on the proteolytic activity of lactic acid bacteria for decreasing cow’s milk αs1-casein allergenicity Mahdi Mohammadian, Khosro Khajeh, Ebrahim Vasheghani Farahani, Moslem Tavakol Sustained release of chondroitinase ABC from enzymatically crosslinked tragacanth biopolymer http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 22 212 213 214 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 23 Table of Contents Open Access Samaneh Mohammadian, Jamshidkhan Chamani, Mohammad Reza Saberi The comparison of the interaction between α-casein and βcasein with ACE peptide by spectroscopy and molecular modeling techniques 215 Sohameh Mohebbi, Maryam Nikkhah, Mehrdad Behmanesh Effect of peptide functionalized gold nanorod on cellular response 216 Sara Mohseni, Khosro Khajeh, Tahereh Tohidi Moghadam, Bahareh Dabirmanesh, Abbas Sahebghadam Lotfi Identification of recombinant matrix metalloproteinase-9 with diagnostic purpose by using SPR technique 217 Maryam Molakarimi, Majid Taghdir, Ammar Mohseni, Reza Hasan Sajedi, Hossein Naderi Manesh The investigation of localization of 2-hydroperoxy coelenterazine in cetenophore photoproteins: a molecular dynamics simulation 218 Hojjat allah Molavian Jazi, Sako Mirzai, Mahbobeh Latifimehr New Inhibitor Based on 5-Alpha Reductase Modeling 219 Mehdi Khorrami, Hassan Dastsouz, Melanie Welch, Mick Tuite, Behrooz Moosavi Hsp104 domains affect the loss of the yeast [PSI+] prion distinctively 220 Maryam Moradi, Adeleh Divsalar, Ali Akbar Saboury Studying the side effects of deferasirox on the structure and function of liver catalase 221 Mohammad Reza Fattahi, Mojtaba Mortazavi, Abdorrasoul Malekpour, Saeed Salehi, Saeedeh Zahedi Analysis of genes and proteins of HCV basis on rare codon clusters 222 Zahra Asadi, Mozaffar Asadi, Hamta Mosallaei Toxicological and biological aspects of transition metal complexes 223 Saeideh Motavalizadeh, Parisa Ghiasi, Farangis Ataei, Jahanbakhsh Asadi, Saman Hosseinkhani Cloning, expression and purification of cholesterol ester hydrolase from Streptomyces 224 Faezeh Mottaghitalab, Seyed Shahriar Arab, Jafar Mohamadian Structural study of CD & FG helices of bacteriorhodopsin under electrical field by molecular dynamics simulation 225 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 23 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 24 Table of Contents Open Access Seyed Shahriar Arab, Mozhgan Mozaffari Legha Prediction of protein flexibility based on information theory 226 Tahereh Naderi Jelodar1, Atiyeh Ghasemi, Ali Akbar Saboury, Mohamad Ali Ebrahimi, Sajjad Shariatizi Inhibition study on lysozyme fibrillation by safranal and crocin small molecules 227 Samaneh Naderi, Massoud Saidijam Cloning, optimization and catalytic activity evaluation of recombinant lysostaphin as a new anti-staphylococcal enzybiotic in Escherichia Coli 228 Abolfazl Barzegar, Jafar Azamat, Esmail Naghizadeh Computational molecular dynamics simulation of functionalized fullerene [C60] derivatives as HIV protease inhibitors Maryam Naseh, Jafar Vatanparast Developmental exposure to organophosphates alters the expression of nitric oxide synthase in the rat supraoptic and paraventricular nuclei 230 Fahimeh Naseri, Jamshidkhan Chamani, Mohammad Reza Saberi Assessment of the interaction between human serum albumin and curcumin by fluorescence method 231 Hadi Nedaei, Ali Akbar Saboury, Ali Akbar Meratan, Mojtaba Falahati Lysozyme fibrillation inhibition by phloridzin small molecules Jafar Nikzad1, Mehrdad Pazhouhandeh1, Maryam Tabarzad, Nastaran Nafissi-Varcheh Fusion proteins in pharmaceutical sciences: today and tomorrow 233 Mehrnoosh Nodehi, Mohamdreza Saberi, Jamshidkhan Chamani Investigation on the interaction between an antioxidant peptide derived from ostrich egg with human serum albumin by circular dichorism spectroscopy 234 Mehrnoosh Nodehi, Mohamdreza Saberi, Jamshidkhan Chamani Study on the interaction between an antioxidant peptide derived from ostrich egg with human transferrin by circular dichorism spectroscopy 235 Navid Omidian, Seyed Mohsen Asghari, Reza Hassan Sajedi Co-expression of human endostatin with artemin as chaperone 236 Mohammad Reza Pakyari, Mohsen Khosravi Maharlooei, Reza Baradar Jalili, Aziz Ghahary, Erin Brown Development of non rejectable allogeneic skin grafts by induction of local immune tolerance 237 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 24 229 232 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 25 Table of Contents Open Access Nasrin Parvaresh, Mojtaba Mortazavi, Masoud Torkzadeh-Mahani, Shahryar Shakeri Study and identification of cutinase-producing bacterial strains 238 Hajar Parvizian, Mehrnaz Keyhanfar, Kamran Ghaedi, Masoud Etemadifar Modelling of new neurotrophic factor protein by computational techniques and calculating interactin of protein-protein 239 Hajar Parvizian, Mehrnaz Keyhanfar, Kamran Ghaedi, Masoud Etemadifar Cloning of neurotrophic factor protein in prokariotic system and expression of this protein to treatment of metabolic neurological diseases 240 Mehrdad Pazhouhandeh, Jafar Nikzad, Maryam Tabarzad, Nastaran Nafissi-Varcheh Analysis of host cell proteins, the uninvited guests 241 Mitra Pirhaghghi, Pouneh Sadat Pourhosseini, Ali Akbar Saboury, Farhood Najafi Spectroscopic evidence for the formation of insulin-cationic gemini surfactant complex 242 Faezeh Seyyed Attaran, Dariush Ilghari, Hossein Piri, Nematollah Gheibi Fibroblast growth factor receptor 2b protein structural changes due to the interaction with naringin 243 Mehdi Pooladi, Solmaz Khaghani Razi Abad, Mostafa Rezaei-Tavirani, Mehrdad Hashemi, Saeed Hesami-Takallu, Leila Firozi dalvand The expression of the GNBP in human brain tumor discovery by neuroproteomics analysis 244 Mehdi Pooladi Protein extraction from human brain fresh-frozen tissue for separation by electrophoresis 245 Esmaeil Poshtban, Jamshidkhan Chamani, Mohammad Reza Saberi Probing the interaction between β-lactoglobulin and peptide antioxidant extracted from ostrich egg white by zeta potential and dynamic light scattering 246 Atefe Poursoleiman, Ali Akbar Saboury, Mojtaba Bagheri, Mohammad Hossein Karimi-Jafari A thermodynamics study of the interaction between human serum albumin and polymyxin B as A group of peptide antibiotics 247 Hamid Reza Qomi, Azizollah Habibi Synthesis of a peptide-drug conjugate with RGD peptide through linkages containing carbon-nitrogen bonds as an integrin-mediated targeting of drug delivery 248 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 25 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 26 Table of Contents Open Access Atieh Rahbarimehr, Nematollah Gheibi, Alireza Shams The study of mechanical properties of colon cancer cell line (Ht29) after treatment with albendazole by micropipette aspiration and atomic force microscopy 249 Fereshteh Rahmati, Saman Hosseinkhani, Akbar Heidari The effect of choline-based deep eutectic solvent on wild type and an arginine rich mutant luciferase 250 Fatame Raisi, Karim Mahnam, Nasrin Sohrabi The study of calcium ion absorption by the aspartame via molecular dynamics simulation 251 Hassan Ramshini, Azam Al-Sadat Moghddasi Microbial production of silver and selenium nanoparticles and their influence on amyloid aggregation process 252 Hassan Ramshini, Nayyereh Kovsari Inhibition of amyloid formation and cytotoxicity by Satureja hortensis extract 253 Sanaz Ranapour, Iraj Saadat Association between genetic polymorphisms of XRCC5 VNTR and ACE intron 16 I/D with risk of colorectal cancer 254 Samaneh Ranjbar Nouri, Hamid Hadi Alijanvand Prediction of protein subunits number by using primary structure 255 Mohammad Ranjkesh Shorkaei, Zahra Asadi, Moslem Sedaghat Interaction of gallium water soluble complex with bovine serum albumin 256 Banafshe Rastegari, Hamid Reza KarbalaeiHeidari Study on the interaction of prodigiosin with human serum albumin 257 Shima Rayatpisheh, Iraj Saadat, MohammadHossein Karimi Association between genetic polymorphisms of GPX1 pro198leu and SOD1 A251G with risk of kidney acute rejection 258 Maryam Rezaei, Samaneh Zolghadri Isoniazid-induced hemolytic anemia with hemoglobin degradation 259 Shahla Rezaei, Ahmad Reza Shahverdi, Mohammad Ali Faramarzi An extremely halophilic laccase from the saline water isolate Chromohalobacter sp. 260 Structure-based design of inhibitory peptides for LRP6 inhibition 261 Elham Rismani, Hamzeh Rahimi, Kayhan Azadmanesh, Seyed Shahriar Arab, Morteza Karimipour, Ladan Teimoori Toolabi http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 26 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 27 Table of Contents Maryam Royvaran, Asghar Taheri-Kafrani Manijheh Sabokdast, Mehran Habibi-Rezaei, Ali Akbar MoosaviMovahedi, Maryam Ferdousi, Farzaneh Sabouni Open Access The effect the proteolytic activity of lactic acid bacteria in cow's milk β-lactoglobulin allergenicity 262 Microglial cell death induced by glycated insulin 263 Mehdi Sadat-Shojai Protein/hydroxyapatite constructs for bone tissue engineering applications 264 Nematollah Gheibi, Seyed Mahdi Sadati The Effect of gallic acid on the structure and stability human serum albumin 265 Parissa Sadegh, Mehran Miroliaie, Mehdi Rahimmalek Inhibition of advanced glycation end-product formation on eye lens proteins by Salvia officinalis extract 266 Parissa Sadegh, Mehran Miroliaie, Mehdi Rahimmalek Antiglycation properties of Salvia Officinalis against the glucose-induced glycation of bovine serum albumin 267 Negar Saeed, Saeed Yousefinejad Prediction of protein amino acids’ retardation factor in different solvent mixtures of NP-TLC Arman Safavi, Marzieh Ehsani, Soheila Rahgozar, Mahboobeh Nazari, Rahman Emamzadeh A bioinformatic study of the effect of Phe180 on the sability of Renilla luciferase Arman Safavi, Marzieh Ehsani, Seyed Hamid Zarkesh-Esfahani, Mahboobeh Nazari, Rahman Emamzadeh The effect of a single amino acid mutation of Met-185 to Ala in Renilla luciferase stability, a bioinformatic study 268 269 270 Fariba Sakhaei, Seyed Ziyae Aldin Samsam Shariat Immobilization of lactoperoxidase onto copper nanoparticle 271 Nadimeh Saki, Firouzeh Gholampour, Aminollah Bahaeddini Effect of quercetin on ferrous sulfate-induced liver failure in rat 272 A bioinformatics study for deciphering the impact of aspartic acid 120 on free energy changes in Renilla luciferase 273 Maryam Salehian, Rahman Emamzadeh, Mahboobeh Nazari http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 27 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 28 Table of Contents Open Access Maryam Salehian, Rahman Emamzadeh, Mahboobeh Nazari In Silico mutagenesis of Renilla luciferase may yield enhanced stability, a bioinformatic study 274 Faranak Salmannejad, Nastaran Nafissi-Varcheh, Alireza Shafaati, Reza Aboofazeli Analysis of aggregation behavior of alpha interferon during agitation and freeze-thawing stresses 275 Amene Samaei-Nouroozi, Shahla Rezaei, Nika Khoshnevis, Mohammad Reza Khoshayand, Mohammad Ali Faramarzi Optimization of culture medium for production of a halophilic lipase from the saline water isolate Alkalibacillus sp. 276 Seyed Ziyae Aldin Samsam Shariat, Mohamad Fazilat, Reihaneh Samsam Shariat Investigation on the kinetic parameters of human ceruloplasmin upon interaction with lead Javad Sargolzaei, Azra Rabbani-Chadegani The effect of valproic acid on viability and histone proteins of bone marrow stem cells Hadis Savarizadeh, Asghar Taheri-Kafrani, Asghar Zeini-Esfahani The studies of interaction between β-lactoglobulin and alprazolam with UV-Vis Moslem Sedaghat, Zahra Asadi, Mohammad Ranjkesh Shorkaei Molecular docking study of gallium complex with bovine serum albumin 280 Sepideh Sepehri, Seyed Shahriar Arab, Reza Hasan Sajedi Substrate binding of maltogenic amylase based on molecular docking simulation 281 Dariush Ilghari, Hossein Piri, Faezeh Seyyed Attaran, Nematollah Gheibi Expression and purification of the recombinant kinase domain of FGFR2b and study of its structural changes due to the interaction with gallic acid 282 Novel protein based bionanocomposites on the basis of egg white and nanoclay 283 Yasaman Shaabani, Mohammad Sirousazar, Iraj Mirzaee, Farshad Kheiri Maryam Shafie, Fatemeh Khodabandeh, Farshid Mohamad Rafiee pISSN 2322-181X 28 278 279 Modeling and theoretical studying of the DnaB helicase in the transcription process http://mbrc.shirazu.ac.ir/ 277 284 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 29 Table of Contents Open Access Sevil Shahamat, Somayyeh Rostamzadeh Mansour A study on magnetic core-bilayer shell nanoparticle: a novel vehicle for entrapment of drugs 285 Sevil Shahamat, Somayyeh Rostamzadeh Mansour Doxorubicin-loaded bilayer-surface magnetite nanoparticle: a novel vehicle for entrapment of drugs 286 Mohammad Bagher Shahsavani, Seyed Masood Nabavizadeh, Mehdi Rashidi, Reza Yousefi In silico study of the interaction between four newly synthesized platinum complexes and human serum albumin Sara Shahidpour, Reza Yousefi, Farhad Panahi, Ali Khalafinehad Antidiabetic pyrimidine-fused heterocyclic compounds as low risk inhibitors for α- amylase and α-glucosidase 288 Bahram Hemmateenejad, Arezoo Shahrrivar Kevishahi, Fatemeh Shakerizadeh-Shirazi Determination of serum albumin by time-insensitive colorimetric sensor 289 Nematollah Gheibi, Mehran Sheikhzadegan Study of 2-mercaptobenzoic acid and 2-pyridinethiol as inhibitors on the cresolase and catecholase reactions of mushroom tyrosinase 290 Seyed Shahriar Arab, Niloofar Shirvanizadeh Contact finder: a web server for identifying amino acids involved in the connection of subunits in multi-subunit proteins 291 Samaneh Siapoush, Azar Shahpiri The effect of ethephon on the release of proteins from the cells of barley aleurone layer 292 Hossein Soleymani, Ali Akbar Saboury Study on the interaction of vitamin D3 with insulin 293 Mina Solhtalab, Hamid Reza Karbalaei-Heidari An investigation on the effect of ionic liquids on stability and hydrolytic activity of the Thermoanaerobacter thermohydrosulfuricus lipase 294 Asieh Soozanipour, Asghar Taheri-Kafrani Investigation on the formulation and stability of recombinant human granulocyte-colony-stimulating factor 295 Mona Sorahi Nobar, Vahid Niknam, Hassan Ebrahimzadeh, Hassan Soltanloo, Satar Tahmasebi Enferadi Differential expression of proteins in resistant and susceptible wheat cultivar during early stage of infection by Fusarium graminearum 296 287 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 29 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 30 Table of Contents Open Access Maryam Tabarzad, Nastaran Nafissi-Varcheh Innovative position of aptamer in the protein world 297 Zahra Taghadosi, Masoud Haghkhah, Mahmoud Aminlari Antimicrobial properties of bioactive peptides derived from trypsin and ficin treated ovotransferrin 298 Fereshteh Taghavi, Mousa Bohlooli, Parvaneh Maghami, Ali Akbar Moosavi-Movahedi Stimulatory effect of potassium sorbate on human serum albumin glycation products: carbonyl contents detection 299 Zahra Taheri, Alimohammad Ahadi, Hoda Ayat Design and construction of gene encoding fusion functional domain of activin A: a model bond study 300 Nematollah Gheibi, Negar Taherkhani Inhibitory effects of quercetin and kaempferol as two propolis derived flavonoids on tyrosinase 301 Zeinab Takalu, Reza Hasan Sajedi, Saman Hosseinkhani, Seyed Mohsen Asghari Co-expression of artemin with firefly luciferase in E. coli for real-time monitoring of preventing cold induced aggregation by artemin and its chaperone activity in vivo Fatemeh Taktaz, Mohammad Taktaz Essential amino acids for the stability of Bacillus licheniformis alpha amylae as predicted by CUPSAT Server 303 Fatemeh Taktaz, Mohammad Taktaz Prediction of silver nanoparticles interaction with L- lactate dehydrogenase (LDH1) in Toxoplasma gondii 304 Hesam Tavoli, Khosro Khajeh Design, construction and characterization of A BTEX biosensore 305 Fatemeh Tohidi, Omid Teymournejad, Ali Taravati In silico prediction of exposed amino acid sequences of H. Pylori outer membrane proteins Zahra Toobaei, Reza Yousefi, Farhad Panahi, Ali Khalafi-Nezhad Molecular docking study of the interaction between polyhydroxyl functionalized acridine derivatives and βLactoglobulin 307 Nastaran Vahabi Barzi, Marjan Sabbaghian, Khadijeh Onsory, Niloofar Sodeifi, Tahereh Modarresi Expression and localization of septin 14 protein in testis tissue of azoospermic men 308 Marzieh Valifard, Sasan Mohsenzadeh Enhancement of total protein content and amino acid accumulation of two Salvia species under moderate salinity 309 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 30 302 306 eISSN 2345-2005 MBRC Molecular Biology Research Communications 2014; 3 (Suppl. 1): 31 Table of Contents Open Access Masoumeh Valipour, Parvaneh Maghami, Ali Akbar Moosavi-Movahedi Conformational changes of human insulin upon interaction with DEHP as A plasticizer 310 Abdolali Varasteh, Seyed Mohsen Asghari Improvement of the organic solvent stability of engineered thermolysin 311 Elanz Yahyavi, Dariush Minai-Tehrani Determination of kinetics parameters of binding of cimetidine to alkaline phosphatase of Escherichia coli 312 Afsoon Yousefi, Reza Yousefi, Farhad Panahi, Ali Khalafi-Nezhad Binding properties of curcumin-based pyrano [2, 3.D] pyrimidine derivatives to β-lactoglobulin as a carrier protein 313 Study on the role of calcium ion on structure and aggregation properties of eye lens crystallins 314 Preparation of supplement for cell culture medium from bovine serum 315 Sara Zafaranchi Zadeh Moghadam, Maryam Ghahramani, Sogand Sasan-Moghadam, Reza Yousefi Zahra Zamani, Farideh Vahabi, Sedigheh Sadeghi, Nourooz Ali Rahimi, Mohammad Arjmand, Mahsa Azadi, Aida Iravani, Maryam Mohammadi, Shirin Parvaz Habibeh Zare The Effect of Electro Magnetic Field on Total proteins of Zea Mays Seedling 316 Mozaffar Asadi, Zahra Asadi, Leila Zarei, Somaye Barzegar Sadi Affinity to bovine serum albumin and anticancer activity of some new water-soluble metal Schiff base complexes 317 Nasrin Zeilabi, Karim Mahnam, Ali Asghar Rastegari Theoretical studies of binding of saccharin to p53 protein and gene via molecular docking method 318 Faezeh MoosaviMovahedi, Ali Akbar Saboury, Ali Akbar Moosavi-Movahedi Conformational locks and thermal kinetics of Silica Nanoparticle Ionic Liquid on Horse Liver Alcohol Dehydrogenase 319 http://mbrc.shirazu.ac.ir/ pISSN 2322-181X 31 eISSN 2345-2005