Download CURRICULUM vitae

CURRICULUM vitae
Nicolas TURENNE
INRA SenS UR 1326
Université Paris-Est
Cité Descartes, 5, boulevard Descartes
Champs-sur-Marne
77454 Marne-la-Vallée Cedex 02
France
Position held
Phone: (33) 1-60-95-71-20
Cell: (33) 6-70-79-51-24
E-mail: [email protected]
http://www.cortext.net/
http://www.inra-ifris.org/
 INRA SenS unit – Université Paris Est, Paris Area
Tenure Research scientist
Corpus Analytics group
January 2011
 INRA MIG unit, Paris Area
Tenure Research scientist
Corpus Analytics group
January 2004-December 2010
 INRA MIAJ unit, Paris Area
Assistant Research scientist
MegaDim group
April 2003-December 2003
 INRA Metarisk unit, Paris Area
Assistant Research scientist
Knowledge Analytics group
September 2001-March 2003
Visting Fellow
 Institute of Cytology and Genetics (ITSIG SB-RAN), Novosibirsk Russia
Visiting research scientist
Structural Biology and Text Mining group
September 2010-December 2010
Education
 University of Strasbourg, France
Ph.D. in Computational Linguistics and Statistical Learning.
Knowledge and Data Mining group, November 2000.
 University of Strasbourg, France
Diploma [M.Sc.] in Multivariate Analysis and Data Processing in Astrophysics, July
1994.
 Paul Sabatier University (Toulouse 3), France
Diploma [B.Sc.] in Physics, July 1991.
Research
Interests
Selected Honors
and Awards
Real-world social and information networks, their evolution. Organization, discovery and
usage of knowledge. My research problems are motivated by datasets in digital humanities,
and usage of computational linguistics and machine learning techniques.
 Best paper award, Text Mining Workshop at EMCSR, Vienna (Autria) 2002.
Publications
 Journals
TURENNE N Clustering and Relational Ambiguity: from Text Data to Natural Data
To appear in J. of Data Mining & Dig.Hum., 2014.
CETRO R., BARBIER M., BREUCKER Ph, EGGERMONT H., GAMBETTE Ph.,
KYRIACOPOULOU T., LE ROUX X., MARTINEAU C., TURENNE N. Approche
semi-automatique pour la définition de motifs d'argumentation d’un corpus de projets
scientifiques du domaine de la biodiversité », Revue des Nouvelles Technologies
de l’Information, to appear, 2014.
TURENNE N., TIYS E., IVANISENKO V., YUDIN N., IGNATIEVA E., VALOUR
D., DEGRELLE S.A., HUE I., “Finding Biomarkers in Non-Model Species :
Literature Mining of Transcription Factors involved in Bovine Embryo Development”,
Journal of Bio Data Mining, 2012.
HUE I, DEGRELLE SA, TURENNE N. Conceptus elongation in cattle : genes,
models and questions. Anim Reprod Sci. 2012 Sep ;134(1-2):19-28.
TURENNE N. Role of a web-based software platform for systems biology. J Comput
Sci Syst Biol. 2011 ;4:3.
TURENNE N., “Modeling Noun-Phrases Dynamics in Specialized Text Collections”,
Journal of Quantitative Linguistics, vol. 17, Issue 3, p. 212-228, 2010.
TURENNE, N., HUE, I., 2009. A combinatorics-based data-mining approach to timeseries microarray alignement. Vestnik VOGIS, 13 (1) : 109-113
TURENNE N (2009) Data Mining, a Tool for Systems Biology or a Systems Biology
Tool. J Comput Sci Syst Biol 2 : 216-218
TURENNE N, SCHWER S.R.. Temporal representation of gene interaction networks
from text databases - drosophila megalogaster and bacillus subtilis cases. International
Journal of data Mining and Bioinformatics (IJDMB), 2(1):36-53, 2008.
TURENNE N., "Apprentissage d'un ensemble pré-structuré de concepts d'un domaine:
l'outil GALEX", Mathématiques, Informatique et Sciences Humaines, Vol(148),41-71,
ISBN 09995-2314 1999, 30 pages.
 Refereed conference proceedings
TURENNE N., MESZAROS B. "KASKAD : a plat-form to extract temporal and
interaction relations for genes in texts", in the proceedings of International Workshop
on NanoBioTechnology (NanoBio'06), Saint-Petersburg, 2006.
TURENNE N. , BARBIER M.
"BELUGA : un outil pour l'analyse dynamique des
connaissances de la littérature scientifique d'un domaine. Première application au cas
des maladies à prions", In proceedings of Extraction et Gestion de Connaissances,
Hébrail G. and Lebart L. eds., Clermont-Ferrand, 2004, France.
TURENNE N. "Learning Semantic Classes for improving Mail Classification", dans
les actes de IJCAI Workshop TextMining and Link Analysis, Acapulco (Mexico),
2003, 6 pages.
TURENNE N. "Bayesian Discriminant Analysis for Lexical Semantic Tagging", à
paraître dans les actes du 16ième congrès European Meeting on Cybernetics and
Systems Research (EMCSR), Vienne (Autriche), 2002, 5 pages.
TURENNE N. "Nommage de classes de termes par consensus", à paraître dans les
actes du 6ième congrès Journées Internationales d'Analyse Statistique des Données
Textuelles (JADT), Saint-Malo (France), 2002 , Poster, 12 pages.
TURENNE N., "Term Clusters Evaluation by MonteCarlo Sampling", dans les actes
du 5ième congrès Journées Internationales d'Analyse Statistique des Données
Textuelles (JADT), Lausanne (Suisse), 2000, 12 pages.
Books and Book
chapters
TURENNE N., ROUSSELOT F., "A new Reformulation System: the SAROS Tool",
dans les actes du 11ième congrès Knowledge Acquisition Workshop (KAW), Banff
(Canada), 1998b , 15 pages.
TURENNE N., ROUSSELOT F., "Evaluation of 4 Clustering Methods used in TextMining", dans les actes du colloque TextMining, lors du 10ième congrès European
Conference on Machine Learning (ECML) , Chemnitz (Allemagne), 1998a , 15 pages.
Major invited and
keynote talks
 TURENNE Nicolas, Knowledge Needs and Information Extraction , 269 pages, ed.
ISTE-Wiley, 2013.
Teaching
 TURENNE Nicolas, Dictionary of 20,000 terms in science and computing with
definitions (French, English, Russian), La Maison du Dictionnaire CD-ROM. LexPro
3.0 ISBN 2-85608-154-1 1998
 invited talk about bioinformatics and textmining3rd Workshop on Algorithms in
bioinformatics , October 7-9, 2008, Laboratoire J.-V. Poncelet, Moscow, Russia.
 invited talk at the Computer Science Laboratory (LIGM) of Université Paris Est, about
the book release “information needs and information extraction” by ISTE-Wiley eds.,
25 January 2013,
Scientific
community
activites
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Perl Language (2008 20h) University Paris 13 - Bachelor in Biology (Level 1)
SQL Language (2008, 10h) University Paris 13 - Bachelor in Biology (Level 2)
Data Mining (2008, 7h) University Paris 8 - Bachelor in Computer Science (Level 3)
Data Mining (2009, 20h) University Paris 9 - Master in Computer Science (Level 2)
Ontology (2009, 20h) University Paris 7 – Master in Comput. Linguistics (level 2)
Data Mining (2013, 30h) University Paris 5 –Bachelor in Data Mining (Level 3)
 Software, tools, data
o Beluga software platform for dynamic knowledge analysis 2001-2006.
o Kaskad software about gene network reconstruction (2006-2007).
o SvcR – R package about clustering by a support vector clustering approach
(2008-2010).
o Contribution to the Cortext platform working group (www.cortext.net) 20112013.
Industrial
Collaboration
 Editor-in-Chief of Journal of Data Mining and Digital Humanities (JDMDH) (created
in may 2013 , published by www.episciences.org)
 Seminar organization of the Cortext group (www.cortext.net)
 Reviewer for: Journal of Computer Science and Systems Biology (JCSSB),
Knowledge Based-Systems (KNOSYS).
 A.D.I.T (Technological Information Dissemination Agency) - Strasbourg 1997
 Neurosoft-Orthalis (Computing Society) - Strasbourg -1998