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Chunmei Liu Ph.D. Affiliation: Howard University Systems and Computer Science "Informatics" Title: Associate Professor Rank: Address: 2300 Sixth Street, NW 2120B LKD Downing Hall Washington, DC 20059 Contact: Email: [email protected] Telephone: 202-865-0056 Narrative Dr. Chunmei Liu's research interests lie in the field of Computational Biology, Bioinformatics, and Algorithms. The primary thrust of her current research is in the development of computational algorithms for protein structure prediction, protein-protein interaction, and peptide sequencing from tandem mass spectral data. She is also interested designing efficient algorithms and the application of high performance computing techniques to solve other computational science problems. Dr. Liu has published many research articles on peer-reviewed journals and conferences. She is a recipient of multiple grants and awards including 2009 NSF CAREER Award. She is currently Associate Professor of the Department of Systems and Computer Science at Howard University. Awards and Honors 2008 2009 Howard University - Funding for Award in Excellent 2009 2013 Howard University - NSF CAREER Award Publications 1. Liu C, Che D, Liu X, Song Y. Applications of machine learning in genomics and PubMed systems biology. Comput Math Methods Med. 2013; 2013:587492. 2. Li H, Liu C. A dynamic data-driven framework for biological data using 2D barcodes. PubMed Comput Math Methods Med. 2012; 2012:892098. 3. Li H, Liu C. Biomarker identification using text mining. Comput Math Methods Med. PubMed 2012; 2012:135780. 4. Li H, Liu C, Burge L, Southerland W. Identification of two post-translational PubMed modifications via tandem mass spectrometry. Int J Comput Biol Drug Des. 2012; 5(34):314-24. 5. Li H, Liu C. Peptide sequence tag generation for tandem mass spectra containing post-translational modifications. Int J Comput Biol Drug Des. 2012; 5(3-4):325-34. 6. Liu C, Li H. In silico prediction of post-translational modifications. Methods Mol Biol. PubMed 2011; 760:325-40. 7. Liu C, Burge L, Blake A. Algorithms and Time Complexity of the Request-Service PubMed Problem. J Comb Optim. 2010 Aug 1; 20(2):180-193. 8. Chen P, Liu C, Burge L, Li J, Mohammad M, Southerland W, Gloster C, Wang B. PubMed DomSVR: domain boundary prediction with support vector regression from sequence information alone. Amino Acids. 2010 Aug; 39(3):713-26. 9. Chen P, Liu C, Burge L, Mahmood M, Southerland W, Gloster C. Protein fold PubMed classification with genetic algorithms and feature selection. J Bioinform Comput Biol. 2009 Oct; 7(5):773-88. PubMed 10. Song Y, Liu C, Huang X, Malmberg RL, Xu Y, Cai L. Efficient parameterized algorithms PubMed for biopolymer structure-sequence alignment. IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec; 3(4):423-32. 11. Liu C, Yan B, Song Y, Xu Y, Cai L. Peptide sequence tag-based blind identification of PubMed post-translational modifications with point process model. Bioinformatics. 2006 Jul 15; 22(14):e307-13. 12. Liu C, Song Y, Yan B, Xu Y, Cai L. Fast de novo peptide sequencing and spectral PubMed alignment via tree decomposition. Pac Symp Biocomput. 2006; 255-66. 13. Liu C, Song Y, Hu P, Malmberg RL, Cai L. Efficient annotation of non-coding RNA PubMed structures including pseudoknots via automated filters. Comput Syst Bioinformatics Conf. 2006; 99-110. 14. Song Y, Liu C, Malmberg RL, He C, Cai L. Memory efficient alignment between RNA PubMed sequences and stochastic grammar models of pseudoknots. Int J Bioinform Res Appl. 2006; 2(3):289-304. 15. Song Y, Liu C, Malmberg R, Pan F, Cai L. Tree decomposition based fast search of PubMed RNA structures including pseudoknots in genomes. Proc IEEE Comput Syst Bioinform Conf. 2005; 223-34. THANK YOU FOR USING THE RTRN RESEARCH COLLABORATION AND PROFESSIONAL NETWORKING SERVICE. RTRN Data Coordinating Center Mississippi e-Center @ Jackson State University 1230 Raymond Road, Box 1800, Jackson, Mississippi 39204 Phone: 601-979-0332, Fax: 601-979-0338, e-mail: [email protected]