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Cattadori et al.
IMPACT OF HELMINTH INFECTIONS AND NUTRITIONAL CONSTRAINTS ON THE
SMALL INTESTINE MICROBIOTA
For additional questions:
Isabella M. Cattadori
Center for Infectious Disease Dynamics and Department of Biology
128W Millennium Science Complex, The Pennsylvania State University
University Park, PA 16802 USA
E-mail: [email protected]
Phone: ++814 865 9594
Summary of the files provided:

Cattadori et al. parasites and nutrition on gut microbiota phylum and baseline
Number of bacterial reads at the phylum taxonomic level from the small intestine
duodenum by: host (rabbit ID), treatment (Control, Control+Collar, Infect, Infect+Collar,
B: Baseline) and day post initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota family
Number of bacterial reads at the family taxonomic level from the small intestine
duodenum by: host (rabbit ID), treatment (Control, Control+Collar, Infect, Infect+Collar)
and day post initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota genus
Number of bacterial reads at the genus taxonomic level from the small intestine
duodenum by: host (rabbit ID), treatment (Control, Control+Collar, Infect, Infect+Collar)
and day post initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota library size by host
Total number of bacterial reads from the small intestine duodenum by: host (rabbit ID),
treatment (Control, Control+Collar, Infect, Infect+Collar, B: Baseline) and day post
initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota functionality KEGG 2
Number of reads at the KEGG 2 functional level from the small intestine duodenum by:
host (rabbit ID), treatment (Control, Control+Collar, Infect, Infect+Collar, B: Baseline)
and day post initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota 2DDct cytokine
Gene expression of cytokines/transcription factors in the small intestine mucosa by: host
(rabbit ID), treatment (C: Control, CC: Control+Collar, I: Infect, IC: Infect+Collar), day
post initial infection (DPI). The gene expression data have been standardized using the
comparative 2-∆∆Ct method.

Cattadori et al. parasites and nutrition on gut microbiota antibody IgA
Level of antibody IgA in the small intestine duodenum mucus by: host (rabbit ID),
treatment (C: Control, CC: Control+Collar, I: Infect, IC: Infect+Collar), day post initial
infection (DPI). The specific (somatic) and general (total) IgA optical density (OD) levels
are included.

Cattadori et al. parasites and nutrition on gut microbiota worm count
Number of parasites counted in the small intestine duodenum by: host (rabbit ID),
treatment (Infect, Infect+Collar) and day post initial infection (DPI)

Cattadori et al. parasites and nutrition on gut microbiota host body mass
Host body mass (in kilograms) by: host (rabbit ID), treatment (Control, Control+Collar,
Infect, Infect+Collar), date of sampling (day, month, year) and day post initial infection
(DPI)